Wall clock time and date at job start Wed Apr 1 2020 00:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 114.00063 * 2 1 4 4 C 1.53004 * 109.47010 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47141 * 65.00134 * 4 3 2 6 6 C 1.34776 * 120.00071 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99932 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00294 * 179.97438 * 6 5 4 9 9 H 1.09006 * 109.53070 * 59.90048 * 8 6 5 10 10 C 1.53116 * 109.50306 * 299.80778 * 8 6 5 11 11 C 1.53124 * 109.16033 * 297.71037 * 10 8 6 12 12 C 1.53041 * 109.27442 * 302.34937 * 11 10 8 13 13 H 1.08995 * 109.46017 * 299.16676 * 12 11 10 14 14 C 1.53003 * 109.45729 * 179.19712 * 12 11 10 15 15 N 1.46841 * 109.52708 * 59.17728 * 12 11 10 16 16 C 1.46901 * 111.00155 * 174.15530 * 15 12 11 17 17 C 1.50691 * 109.47229 * 199.68566 * 16 15 12 18 18 O 1.21283 * 120.00288 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00300 * 180.02562 * 17 16 15 20 20 C 1.46500 * 120.00624 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.47364 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99960 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00245 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99800 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00356 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.47123 * 89.99663 * 25 23 21 27 27 H 1.48499 * 109.47281 * 209.99635 * 25 23 21 28 28 H 1.48497 * 109.46934 * 330.00217 * 25 23 21 29 29 C 1.46845 * 111.20005 * 298.25713 * 15 12 11 30 30 H 1.09002 * 109.47636 * 59.99506 * 1 2 3 31 31 H 1.09001 * 109.47236 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46947 * 299.99665 * 1 2 3 33 33 H 1.08999 * 109.46547 * 60.00452 * 3 2 1 34 34 H 1.08994 * 109.47168 * 300.00368 * 3 2 1 35 35 H 1.08998 * 109.47119 * 304.99950 * 4 3 2 36 36 H 1.08995 * 109.46724 * 185.00568 * 4 3 2 37 37 H 0.97007 * 120.00107 * 0.02562 * 5 4 3 38 38 H 1.09003 * 109.52659 * 57.61250 * 10 8 6 39 39 H 1.08995 * 109.52421 * 177.74318 * 10 8 6 40 40 H 1.09000 * 109.50340 * 62.28579 * 11 10 8 41 41 H 1.08995 * 109.50306 * 182.36588 * 11 10 8 42 42 H 1.08998 * 109.47653 * 52.30881 * 14 12 11 43 43 H 1.09004 * 109.46671 * 172.30933 * 14 12 11 44 44 H 1.09003 * 109.46825 * 292.30224 * 14 12 11 45 45 H 1.08995 * 109.46954 * 319.69010 * 16 15 12 46 46 H 1.09006 * 109.46505 * 79.68512 * 16 15 12 47 47 H 0.97005 * 119.99502 * 0.02562 * 19 17 16 48 48 H 1.09006 * 109.46469 * 299.99867 * 20 19 17 49 49 H 1.09000 * 109.47013 * 59.99923 * 20 19 17 50 50 H 0.97003 * 120.00093 * 180.02562 * 24 23 21 51 51 H 1.09001 * 109.46309 * 301.72706 * 29 15 12 52 52 H 1.08993 * 109.46275 * 181.75292 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 5.2883 0.3566 -1.4767 7 8 6.1051 0.6825 -0.6415 8 6 5.7411 -0.2820 -2.7645 9 1 5.4236 0.3322 -3.6072 10 6 5.1235 -1.6776 -2.8879 11 6 5.6220 -2.5516 -1.7336 12 6 7.1511 -2.6063 -1.7653 13 1 7.4794 -3.0451 -2.7074 14 6 7.6547 -3.4625 -0.6015 15 7 7.6935 -1.2472 -1.6434 16 6 9.1580 -1.2729 -1.5308 17 6 9.6389 0.0257 -0.9365 18 8 8.8404 0.8876 -0.6357 19 7 10.9565 0.2294 -0.7390 20 6 11.4241 1.4915 -0.1606 21 6 12.9265 1.4657 -0.0464 22 1 13.4780 0.5959 -0.3717 23 6 13.5972 2.5520 0.4743 24 7 12.9257 3.6110 0.8708 25 14 15.4594 2.5197 0.6165 26 1 16.0605 3.0599 -0.6294 27 1 15.8822 3.3521 1.7714 28 1 15.9161 1.1215 0.8205 29 6 7.2667 -0.4025 -2.7662 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8514 0.5682 0.8409 36 1 3.9785 2.1765 0.0890 37 1 3.3224 0.3041 -1.9209 38 1 4.0371 -1.6005 -2.8434 39 1 5.4185 -2.1238 -3.8375 40 1 5.2927 -2.1255 -0.7860 41 1 5.2190 -3.5588 -1.8394 42 1 7.1482 -4.4275 -0.6145 43 1 8.7294 -3.6149 -0.7010 44 1 7.4454 -2.9548 0.3402 45 1 9.4585 -2.1001 -0.8879 46 1 9.5961 -1.4040 -2.5203 47 1 11.5952 -0.4599 -0.9798 48 1 11.1231 2.3191 -0.8031 49 1 10.9863 1.6220 0.8290 50 1 13.3975 4.3754 1.2368 51 1 7.5945 -0.8517 -3.7037 52 1 7.7094 0.5882 -2.6641 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144239882.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:19 Heat of formation + Delta-G solvation = -111.598865 kcal Electronic energy + Delta-G solvation = -31278.085805 eV Core-core repulsion = 27084.858346 eV Total energy + Delta-G solvation = -4193.227460 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.36759 -38.83110 -38.17393 -37.41549 -34.48729 -33.97813 -33.59937 -32.27426 -32.12203 -29.87744 -28.25430 -27.33788 -26.61269 -26.07179 -23.64589 -23.13879 -22.16417 -21.85049 -20.51638 -19.30536 -19.20943 -16.98810 -16.93876 -16.64812 -16.48858 -16.18993 -15.56725 -15.42601 -15.17589 -14.91661 -14.81241 -14.49458 -14.35532 -13.99938 -13.81705 -13.53147 -13.46429 -12.98398 -12.72668 -12.62611 -12.38775 -12.11204 -12.03276 -11.96023 -11.93122 -11.81851 -11.69620 -11.54297 -11.44565 -11.17776 -10.89220 -10.87376 -10.75668 -10.38147 -10.24186 -10.17885 -10.09833 -9.26414 -9.18744 -8.79168 -8.66259 -8.60125 -7.85921 -7.59027 -6.06063 -4.12125 3.14597 3.30021 3.31607 3.35744 3.38602 3.44049 3.74232 3.83038 4.36859 4.59198 4.61783 4.66033 4.75633 4.79282 4.85187 4.95206 4.97557 4.98239 5.09146 5.23336 5.27953 5.29357 5.29848 5.33931 5.46360 5.51198 5.56237 5.59582 5.65513 5.73706 5.77482 5.79677 5.88359 5.91024 5.96417 5.97821 6.17672 6.22812 6.37831 6.62528 6.77237 7.21568 7.39024 7.51469 7.69272 7.70598 7.76572 7.86093 8.11341 8.73585 8.85760 8.98465 9.42924 9.58115 11.04174 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.002474 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.005775 B =11315.322182 C =12617.952071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.741 5.741 6 C 0.503 3.497 7 O -0.463 6.463 8 C -0.102 4.102 9 H 0.093 0.907 10 C -0.110 4.110 11 C -0.111 4.111 12 C 0.081 3.919 13 H 0.035 0.965 14 C -0.150 4.150 15 N -0.496 5.496 16 C 0.032 3.968 17 C 0.489 3.511 18 O -0.506 6.506 19 N -0.725 5.725 20 C 0.255 3.745 21 C -0.539 4.539 22 H 0.061 0.939 23 C 0.062 3.938 24 N -0.886 5.886 25 Si 0.902 3.098 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.078 3.922 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.393 0.607 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.052 0.948 47 H 0.385 0.615 48 H 0.022 0.978 49 H 0.024 0.976 50 H 0.264 0.736 51 H 0.031 0.969 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.186 -12.683 -8.603 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.027 4.027 4 C 0.002 3.998 5 N -0.398 5.398 6 C 0.287 3.713 7 O -0.332 6.332 8 C -0.124 4.124 9 H 0.111 0.889 10 C -0.148 4.148 11 C -0.149 4.149 12 C -0.028 4.028 13 H 0.053 0.947 14 C -0.207 4.207 15 N -0.220 5.220 16 C -0.099 4.099 17 C 0.272 3.728 18 O -0.381 6.381 19 N -0.376 5.376 20 C 0.134 3.866 21 C -0.578 4.578 22 H 0.079 0.921 23 C -0.142 4.142 24 N -0.524 5.524 25 Si 0.730 3.270 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.198 1.198 29 C -0.050 4.050 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.227 0.773 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.216 0.784 48 H 0.040 0.960 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.049 0.951 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.181 -11.541 -7.194 27.743 hybrid contribution 1.052 -0.469 -1.090 1.586 sum -23.129 -12.009 -8.284 27.346 Atomic orbital electron populations 1.22744 0.81092 1.02795 0.99939 1.87951 1.19601 1.27688 1.95412 1.22845 0.93691 0.85129 1.01070 1.21232 0.90943 0.99372 0.88220 1.45949 1.07887 1.65645 1.20269 1.20388 0.81825 0.79783 0.89281 1.90998 1.51311 1.46245 1.44634 1.21391 0.97132 0.97156 0.96683 0.88920 1.21572 0.99953 0.94070 0.99218 1.21624 0.94497 0.99391 0.99367 1.21633 0.94939 0.88978 0.97218 0.94682 1.21942 1.00711 0.98808 0.99236 1.61418 1.07905 1.09276 1.43426 1.22083 0.88770 0.98557 1.00493 1.20356 0.83091 0.88837 0.80534 1.90781 1.53521 1.44426 1.49334 1.46439 1.06038 1.20884 1.64219 1.18975 0.93658 0.80176 0.93782 1.21266 0.91359 1.02081 1.43077 0.92054 1.24960 0.98888 0.95223 0.95090 1.69990 1.35746 1.05353 1.41277 0.86442 0.84858 0.78052 0.77685 1.20570 1.21080 1.19812 1.21888 0.92950 0.99702 0.90482 0.94129 0.89626 0.94059 0.91812 0.92733 0.90888 0.90145 0.77346 0.91475 0.91391 0.90809 0.91545 0.92374 0.92458 0.91300 0.88281 0.93028 0.78358 0.95953 0.95805 0.92593 0.95131 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.46 10.65 -35.23 -0.38 -3.84 16 3 C 0.05 0.39 6.07 37.16 0.23 0.61 16 4 C 0.13 1.38 6.06 -4.04 -0.02 1.35 16 5 N -0.74 -8.22 5.38 -60.30 -0.32 -8.54 16 6 C 0.50 7.32 5.87 -10.98 -0.06 7.26 16 7 O -0.46 -9.40 13.82 -9.56 -0.13 -9.54 16 8 C -0.10 -1.19 3.02 -91.69 -0.28 -1.47 16 9 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 10 C -0.11 -1.00 5.43 -26.61 -0.14 -1.15 16 11 C -0.11 -1.17 5.11 -26.65 -0.14 -1.31 16 12 C 0.08 0.96 2.44 -67.72 -0.17 0.80 16 13 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 14 C -0.15 -1.69 8.59 37.16 0.32 -1.37 16 15 N -0.50 -7.62 2.91 -228.13 -0.66 -8.29 16 16 C 0.03 0.51 5.31 -4.98 -0.03 0.49 16 17 C 0.49 10.58 7.53 -10.99 -0.08 10.49 16 18 O -0.51 -13.18 13.74 -9.55 -0.13 -13.31 16 19 N -0.72 -16.32 5.55 -61.47 -0.34 -16.67 16 20 C 0.26 7.15 5.43 -5.20 -0.03 7.12 16 21 C -0.54 -15.27 9.28 -34.44 -0.32 -15.59 16 22 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 25 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 29 C 0.08 1.13 4.10 -3.83 -0.02 1.12 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.39 3.34 7.88 -40.82 -0.32 3.02 16 38 H 0.07 0.51 7.52 -51.93 -0.39 0.12 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.97 7.35 -51.93 -0.38 0.59 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 43 H 0.06 0.61 6.38 -51.93 -0.33 0.28 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.10 1.41 5.42 -51.93 -0.28 1.13 16 46 H 0.05 0.72 8.00 -51.93 -0.42 0.31 16 47 H 0.38 7.45 8.32 -40.82 -0.34 7.11 16 48 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 51 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 52 H 0.09 1.71 6.63 -51.93 -0.34 1.37 16 LS Contribution 410.59 15.07 6.19 6.19 Total: -1.00 -37.36 410.59 -8.89 -46.25 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -9.10 Total: 6.26 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 0.27 Total: 11.32 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.59 Total: -59.86 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.64 Total: -26.68 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.36 -8.89 -46.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144239882.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.345 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds