Wall clock time and date at job start Wed Apr 1 2020 00:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 114.00063 * 2 1 4 4 C 1.53004 * 109.47010 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47141 * 65.00134 * 4 3 2 6 6 C 1.34776 * 120.00071 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99932 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00294 * 179.97438 * 6 5 4 9 9 H 1.09006 * 109.53070 * 59.90048 * 8 6 5 10 10 C 1.53116 * 109.50306 * 299.80778 * 8 6 5 11 11 C 1.53124 * 109.16033 * 297.71037 * 10 8 6 12 12 C 1.53041 * 109.27442 * 302.34937 * 11 10 8 13 13 H 1.08995 * 109.46017 * 299.16676 * 12 11 10 14 14 C 1.53003 * 109.45729 * 179.19712 * 12 11 10 15 15 N 1.46841 * 109.52708 * 59.17728 * 12 11 10 16 16 C 1.46901 * 111.00155 * 174.15530 * 15 12 11 17 17 C 1.50691 * 109.47229 * 199.68566 * 16 15 12 18 18 O 1.21283 * 120.00288 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00300 * 180.02562 * 17 16 15 20 20 C 1.46500 * 120.00624 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.47364 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99960 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00245 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99800 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00356 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.47123 * 89.99663 * 25 23 21 27 27 H 1.48499 * 109.47281 * 209.99635 * 25 23 21 28 28 H 1.48497 * 109.46934 * 330.00217 * 25 23 21 29 29 C 1.46845 * 111.20005 * 298.25713 * 15 12 11 30 30 H 1.09002 * 109.47636 * 59.99506 * 1 2 3 31 31 H 1.09001 * 109.47236 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46947 * 299.99665 * 1 2 3 33 33 H 1.08999 * 109.46547 * 60.00452 * 3 2 1 34 34 H 1.08994 * 109.47168 * 300.00368 * 3 2 1 35 35 H 1.08998 * 109.47119 * 304.99950 * 4 3 2 36 36 H 1.08995 * 109.46724 * 185.00568 * 4 3 2 37 37 H 0.97007 * 120.00107 * 0.02562 * 5 4 3 38 38 H 1.09003 * 109.52659 * 57.61250 * 10 8 6 39 39 H 1.08995 * 109.52421 * 177.74318 * 10 8 6 40 40 H 1.09000 * 109.50340 * 62.28579 * 11 10 8 41 41 H 1.08995 * 109.50306 * 182.36588 * 11 10 8 42 42 H 1.08998 * 109.47653 * 52.30881 * 14 12 11 43 43 H 1.09004 * 109.46671 * 172.30933 * 14 12 11 44 44 H 1.09003 * 109.46825 * 292.30224 * 14 12 11 45 45 H 1.08995 * 109.46954 * 319.69010 * 16 15 12 46 46 H 1.09006 * 109.46505 * 79.68512 * 16 15 12 47 47 H 0.97005 * 119.99502 * 0.02562 * 19 17 16 48 48 H 1.09006 * 109.46469 * 299.99867 * 20 19 17 49 49 H 1.09000 * 109.47013 * 59.99923 * 20 19 17 50 50 H 0.97003 * 120.00093 * 180.02562 * 24 23 21 51 51 H 1.09001 * 109.46309 * 301.72706 * 29 15 12 52 52 H 1.08993 * 109.46275 * 181.75292 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 5.2883 0.3566 -1.4767 7 8 6.1051 0.6825 -0.6415 8 6 5.7411 -0.2820 -2.7645 9 1 5.4236 0.3322 -3.6072 10 6 5.1235 -1.6776 -2.8879 11 6 5.6220 -2.5516 -1.7336 12 6 7.1511 -2.6063 -1.7653 13 1 7.4794 -3.0451 -2.7074 14 6 7.6547 -3.4625 -0.6015 15 7 7.6935 -1.2472 -1.6434 16 6 9.1580 -1.2729 -1.5308 17 6 9.6389 0.0257 -0.9365 18 8 8.8404 0.8876 -0.6357 19 7 10.9565 0.2294 -0.7390 20 6 11.4241 1.4915 -0.1606 21 6 12.9265 1.4657 -0.0464 22 1 13.4780 0.5959 -0.3717 23 6 13.5972 2.5520 0.4743 24 7 12.9257 3.6110 0.8708 25 14 15.4594 2.5197 0.6165 26 1 16.0605 3.0599 -0.6294 27 1 15.8822 3.3521 1.7714 28 1 15.9161 1.1215 0.8205 29 6 7.2667 -0.4025 -2.7662 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8514 0.5682 0.8409 36 1 3.9785 2.1765 0.0890 37 1 3.3224 0.3041 -1.9209 38 1 4.0371 -1.6005 -2.8434 39 1 5.4185 -2.1238 -3.8375 40 1 5.2927 -2.1255 -0.7860 41 1 5.2190 -3.5588 -1.8394 42 1 7.1482 -4.4275 -0.6145 43 1 8.7294 -3.6149 -0.7010 44 1 7.4454 -2.9548 0.3402 45 1 9.4585 -2.1001 -0.8879 46 1 9.5961 -1.4040 -2.5203 47 1 11.5952 -0.4599 -0.9798 48 1 11.1231 2.3191 -0.8031 49 1 10.9863 1.6220 0.8290 50 1 13.3975 4.3754 1.2368 51 1 7.5945 -0.8517 -3.7037 52 1 7.7094 0.5882 -2.6641 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144239882.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:18 Heat of formation + Delta-G solvation = -141.744876 kcal Electronic energy + Delta-G solvation = -31279.393035 eV Core-core repulsion = 27084.858346 eV Total energy + Delta-G solvation = -4194.534689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.46053 -40.25695 -39.15577 -38.53611 -36.01424 -35.53586 -34.68604 -34.23708 -33.29116 -30.72436 -29.95817 -28.43796 -27.70597 -27.06566 -24.94571 -24.31787 -23.64531 -22.84607 -21.59384 -21.09930 -20.19784 -18.87493 -17.72704 -17.61706 -17.44432 -17.34198 -17.21499 -16.70935 -16.46655 -16.12953 -15.91819 -15.76351 -15.60970 -15.30914 -14.91280 -14.76513 -14.68146 -14.16793 -14.07739 -13.88777 -13.70784 -13.55278 -13.42779 -13.05353 -12.89670 -12.82761 -12.77906 -12.72079 -12.65069 -12.54896 -12.36857 -12.21603 -12.11689 -11.76881 -11.47313 -11.39727 -11.11433 -10.78573 -10.68450 -10.43331 -10.35138 -9.86702 -9.67206 -8.96235 -8.28248 -6.45556 1.41148 1.44928 1.56188 2.01884 2.05128 2.31729 2.38993 2.53777 2.81098 3.05621 3.15511 3.72224 3.87009 3.90580 3.97070 4.00107 4.14651 4.17506 4.30479 4.36563 4.41108 4.42988 4.48124 4.48360 4.56143 4.59762 4.65242 4.69737 4.75314 4.84839 4.90259 4.91273 4.93640 4.99996 5.07219 5.09234 5.15502 5.24062 5.26980 5.30730 5.49579 5.53369 5.66941 5.78775 5.89434 6.13884 6.20088 6.40215 6.67144 6.82772 7.10558 7.24723 7.67374 7.75095 8.84287 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.002474 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.005775 B =11315.322182 C =12617.952071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.060 3.940 4 C 0.125 3.875 5 N -0.724 5.724 6 C 0.499 3.501 7 O -0.533 6.533 8 C -0.099 4.099 9 H 0.119 0.881 10 C -0.101 4.101 11 C -0.109 4.109 12 C 0.079 3.921 13 H 0.061 0.939 14 C -0.148 4.148 15 N -0.525 5.525 16 C 0.048 3.952 17 C 0.481 3.519 18 O -0.555 6.555 19 N -0.719 5.719 20 C 0.275 3.725 21 C -0.554 4.554 22 H 0.084 0.916 23 C -0.001 4.001 24 N -0.934 5.934 25 Si 0.989 3.011 26 H -0.269 1.269 27 H -0.284 1.284 28 H -0.254 1.254 29 C 0.078 3.922 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.066 0.934 37 H 0.410 0.590 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.038 0.962 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.120 0.880 46 H 0.082 0.918 47 H 0.404 0.596 48 H -0.020 1.020 49 H -0.024 1.024 50 H 0.268 0.732 51 H 0.059 0.941 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.640 -15.730 -11.073 31.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.016 4.016 4 C 0.000 4.000 5 N -0.380 5.380 6 C 0.284 3.716 7 O -0.407 6.407 8 C -0.120 4.120 9 H 0.137 0.863 10 C -0.138 4.138 11 C -0.147 4.147 12 C -0.028 4.028 13 H 0.079 0.921 14 C -0.205 4.205 15 N -0.250 5.250 16 C -0.083 4.083 17 C 0.267 3.733 18 O -0.432 6.432 19 N -0.372 5.372 20 C 0.152 3.848 21 C -0.592 4.592 22 H 0.102 0.898 23 C -0.200 4.200 24 N -0.572 5.572 25 Si 0.812 3.188 26 H -0.194 1.194 27 H -0.209 1.209 28 H -0.178 1.178 29 C -0.050 4.050 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.246 0.754 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.057 0.943 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.137 0.863 46 H 0.100 0.900 47 H 0.239 0.761 48 H -0.003 1.003 49 H -0.006 1.006 50 H 0.077 0.923 51 H 0.077 0.923 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -24.700 -14.656 -9.716 30.319 hybrid contribution 1.049 0.503 -0.287 1.198 sum -23.650 -14.153 -10.003 29.321 Atomic orbital electron populations 1.22921 0.79312 1.03776 1.00990 1.87905 1.21534 1.28021 1.95651 1.22731 0.90943 0.85279 1.02666 1.21188 0.93581 0.97888 0.87320 1.45814 1.07332 1.64374 1.20477 1.21047 0.82103 0.78740 0.89667 1.90985 1.53232 1.49371 1.47113 1.21458 0.95527 0.99399 0.95634 0.86289 1.21589 1.00915 0.91566 0.99751 1.21637 0.93656 1.01047 0.98381 1.21784 0.95697 0.86924 0.98400 0.92077 1.21940 1.01465 0.99588 0.97504 1.61291 1.07267 1.11688 1.44760 1.21941 0.89909 0.94750 1.01719 1.21555 0.81992 0.90511 0.79232 1.90773 1.54635 1.46726 1.51100 1.46206 1.07272 1.19535 1.64170 1.18367 0.94203 0.81599 0.90667 1.21641 0.91163 1.03123 1.43246 0.89774 1.26161 1.05278 0.94450 0.94138 1.70173 1.38528 1.06392 1.42146 0.85100 0.76905 0.78964 0.77869 1.19402 1.20935 1.17809 1.21817 0.94606 0.97262 0.91316 0.92619 0.88764 0.93445 0.90636 0.90609 0.93734 0.91591 0.75396 0.89406 0.88542 0.94291 0.88688 0.89768 0.91849 0.94550 0.86259 0.90040 0.76144 1.00255 1.00583 0.92322 0.92327 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -6.88 10.65 -148.98 -1.59 -8.47 16 3 C 0.06 0.91 6.07 71.98 0.44 1.35 16 4 C 0.12 2.91 6.06 86.38 0.52 3.43 16 5 N -0.72 -16.26 5.38 -463.07 -2.49 -18.76 16 6 C 0.50 15.08 5.87 87.66 0.51 15.60 16 7 O -0.53 -23.57 13.82 11.40 0.16 -23.41 16 8 C -0.10 -2.19 3.02 -11.49 -0.03 -2.22 16 9 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 10 C -0.10 -1.47 5.43 30.67 0.17 -1.30 16 11 C -0.11 -2.05 5.11 30.65 0.16 -1.89 16 12 C 0.08 1.70 2.44 44.94 0.11 1.81 16 13 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 14 C -0.15 -3.07 8.59 71.98 0.62 -2.45 16 15 N -0.52 -16.02 2.91 -875.68 -2.55 -18.57 16 16 C 0.05 1.50 5.31 85.55 0.45 1.95 16 17 C 0.48 21.89 7.53 87.65 0.66 22.55 16 18 O -0.56 -31.39 13.74 11.41 0.16 -31.23 16 19 N -0.72 -33.75 5.55 -466.79 -2.59 -36.34 16 20 C 0.27 16.45 5.43 85.63 0.46 16.91 16 21 C -0.55 -32.05 9.28 25.60 0.24 -31.81 16 22 H 0.08 4.38 7.60 -2.91 -0.02 4.36 16 23 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 24 N -0.93 -59.47 13.29 21.45 0.28 -59.18 16 25 Si 0.99 44.27 29.54 68.60 2.03 46.30 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 29 C 0.08 2.24 4.10 86.33 0.35 2.60 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.41 6.35 7.88 -92.70 -0.73 5.62 16 38 H 0.09 0.96 7.52 -2.39 -0.02 0.94 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.04 1.01 7.35 -2.39 -0.02 0.99 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 1.30 8.13 -2.39 -0.02 1.28 16 43 H 0.06 1.21 6.38 -2.38 -0.02 1.20 16 44 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 45 H 0.12 3.24 5.42 -2.39 -0.01 3.23 16 46 H 0.08 2.09 8.00 -2.38 -0.02 2.07 16 47 H 0.40 15.64 8.32 -92.70 -0.77 14.87 16 48 H -0.02 -1.38 8.14 -2.38 -0.02 -1.40 16 49 H -0.02 -1.62 8.14 -2.39 -0.02 -1.64 16 50 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 51 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.04 1.65 6.63 -2.39 -0.02 1.63 16 Total: -1.00 -91.14 410.59 -0.80 -91.94 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.58 Total: 29.30 kcal Atomic # 6 Polarization: 22.03 SS G_CDS: 6.37 Total: 28.40 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -7.35 Total: -132.85 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -1.27 Total: -63.10 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -91.14 -0.80 -91.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144239882.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.802 kcal (2) G-P(sol) polarization free energy of solvation -91.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds