Wall clock time and date at job start Wed Apr 1 2020 01:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34638 * 116.99604 * 2 1 4 4 O 1.21514 * 120.00369 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99688 * 179.97438 * 3 2 1 6 6 C 1.46923 * 120.62994 * 180.02562 * 5 3 2 7 7 C 1.53191 * 108.77292 * 233.58200 * 6 5 3 8 8 C 1.53031 * 109.31433 * 305.36553 * 7 6 5 9 9 C 1.53004 * 109.46199 * 181.38512 * 8 7 6 10 10 H 1.08995 * 109.47216 * 59.99867 * 9 8 7 11 11 C 1.52999 * 109.47083 * 299.99863 * 9 8 7 12 12 N 1.46498 * 109.47065 * 179.97438 * 9 8 7 13 13 C 1.34777 * 119.99828 * 204.72115 * 12 9 8 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 9 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 9 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.47198 * 179.97438 * 16 15 13 18 18 C 1.52992 * 109.47321 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47554 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99751 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00505 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99687 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00201 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47135 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47080 * 119.99899 * 23 21 19 26 26 H 1.48497 * 109.47104 * 240.00206 * 23 21 19 27 27 C 1.53038 * 109.54033 * 61.36367 * 8 7 6 28 28 C 1.46922 * 120.62939 * 359.97085 * 5 3 2 29 29 H 1.08995 * 109.47513 * 300.00098 * 1 2 3 30 30 H 1.09007 * 109.46829 * 60.00089 * 1 2 3 31 31 H 1.08998 * 109.47088 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.58831 * 113.79720 * 6 5 3 33 33 H 1.09001 * 109.58907 * 353.36925 * 6 5 3 34 34 H 1.09000 * 109.49885 * 185.40858 * 7 6 5 35 35 H 1.09004 * 109.49539 * 65.31870 * 7 6 5 36 36 H 1.09003 * 109.46063 * 301.35614 * 8 7 6 37 37 H 1.08995 * 109.47098 * 300.00077 * 11 9 8 38 38 H 1.09003 * 109.47054 * 59.99725 * 11 9 8 39 39 H 1.08996 * 109.47245 * 179.97438 * 11 9 8 40 40 H 0.97001 * 120.00384 * 25.00562 * 12 9 8 41 41 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 42 42 H 1.09000 * 109.47602 * 299.99940 * 16 15 13 43 43 H 1.09006 * 109.46868 * 59.99976 * 16 15 13 44 44 H 1.09000 * 109.47211 * 300.00689 * 17 16 15 45 45 H 1.09007 * 109.46376 * 60.00147 * 17 16 15 46 46 H 1.09000 * 109.47686 * 300.00577 * 18 17 16 47 47 H 1.08998 * 109.47284 * 60.00513 * 18 17 16 48 48 H 0.97010 * 119.99934 * 180.02562 * 22 21 19 49 49 H 1.09006 * 109.49860 * 58.58550 * 27 8 7 50 50 H 1.08999 * 109.50362 * 178.68305 * 27 8 7 51 51 H 1.09002 * 109.59312 * 246.20192 * 28 5 3 52 52 H 1.08997 * 109.58670 * 6.49427 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0905 2.5719 0.0011 7 6 5.0824 2.6097 -1.1657 8 6 6.0241 1.4073 -1.0686 9 6 7.0384 1.4604 -2.2129 10 1 7.6168 2.3816 -2.1433 11 6 6.2990 1.4224 -3.5518 12 7 7.9403 0.3098 -2.1197 13 6 9.1729 0.3742 -2.6612 14 8 9.5381 1.3891 -3.2224 15 7 10.0007 -0.6864 -2.5804 16 6 11.3406 -0.6162 -3.1684 17 6 12.0686 -1.9421 -2.9385 18 6 13.4678 -1.8690 -3.5531 19 6 14.1846 -3.1752 -3.3273 20 1 13.6914 -3.9774 -2.7985 21 6 15.4701 -3.3462 -3.7955 22 7 16.0709 -2.3691 -4.4389 23 14 16.3583 -4.9655 -3.5161 24 1 15.4705 -5.8952 -2.7726 25 1 16.7170 -5.5659 -4.8262 26 1 17.5933 -4.7231 -2.7279 27 6 5.2133 0.1130 -1.1656 28 6 4.2229 0.0469 0.0017 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 4.6268 2.7033 0.9410 33 1 3.3563 3.3688 -0.1176 34 1 5.6630 3.5311 -1.1200 35 1 4.5368 2.5693 -2.1085 36 1 6.5511 1.4348 -0.1148 37 1 5.7206 0.5012 -3.6215 38 1 5.6282 2.2788 -3.6209 39 1 7.0215 1.4607 -4.3670 40 1 7.6490 -0.4999 -1.6720 41 1 9.7094 -1.4959 -2.1323 42 1 11.2584 -0.4273 -4.2388 43 1 11.9015 0.1921 -2.6990 44 1 12.1509 -2.1306 -1.8681 45 1 11.5078 -2.7505 -3.4077 46 1 13.3851 -1.6808 -4.6236 47 1 14.0288 -1.0606 -3.0844 48 1 16.9752 -2.4895 -4.7687 49 1 4.6664 0.0960 -2.1084 50 1 5.8870 -0.7427 -1.1199 51 1 4.7699 -0.0273 0.9416 52 1 3.5757 -0.8225 -0.1141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186859784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:38 Heat of formation + Delta-G solvation = -129.388895 kcal Electronic energy + Delta-G solvation = -29616.294266 eV Core-core repulsion = 25422.295373 eV Total energy + Delta-G solvation = -4193.998893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.17681 -40.16388 -38.93864 -36.94425 -36.02601 -35.14545 -33.41062 -32.91513 -31.65049 -31.16657 -29.78387 -28.05979 -26.65033 -25.87267 -24.03747 -23.55541 -22.71667 -21.22449 -20.74121 -20.31447 -19.77647 -18.55469 -18.08907 -17.44997 -16.94722 -16.59815 -16.08997 -15.50430 -15.38059 -15.23519 -15.02274 -14.64946 -14.64477 -14.40312 -14.12217 -14.01802 -13.91510 -13.53112 -13.41029 -12.98090 -12.69058 -12.48805 -12.35354 -12.28904 -12.22601 -11.80348 -11.70443 -11.45724 -11.24852 -11.21763 -11.10117 -10.94304 -10.92031 -10.72399 -10.63913 -10.56499 -10.07582 -9.86175 -9.44266 -9.31590 -9.17184 -9.11143 -8.60525 -8.37710 -6.02129 -4.05161 1.68571 2.36174 2.79712 3.29471 3.37024 3.38179 3.40304 3.40592 4.14683 4.21566 4.25067 4.38557 4.45131 4.54543 4.69008 4.73139 4.76452 4.77182 4.94591 5.01869 5.06256 5.09815 5.19219 5.27163 5.33206 5.33784 5.36806 5.43041 5.50447 5.62437 5.68229 5.79687 5.81468 5.81880 5.84669 5.96095 6.14470 6.18944 6.50023 6.53934 6.62641 6.81275 6.82687 7.02704 7.08421 7.64042 7.76709 7.80816 7.96928 8.16238 8.37886 8.77298 9.01799 9.59072 11.09155 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024378 B = 0.001536 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.290056 B =18224.312032 C =18991.427704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.649 3.351 4 O -0.574 6.574 5 N -0.592 5.592 6 C 0.127 3.873 7 C -0.130 4.130 8 C -0.095 4.095 9 C 0.168 3.832 10 H 0.090 0.910 11 C -0.168 4.168 12 N -0.747 5.747 13 C 0.700 3.300 14 O -0.593 6.593 15 N -0.742 5.742 16 C 0.135 3.865 17 C -0.120 4.120 18 C 0.023 3.977 19 C -0.522 4.522 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C -0.134 4.134 28 C 0.112 3.888 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.392 0.608 41 H 0.393 0.607 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.260 0.740 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.073 0.927 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.662 6.010 10.710 33.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.285 6.285 3 C 0.403 3.597 4 O -0.463 6.463 5 N -0.333 5.333 6 C 0.006 3.994 7 C -0.169 4.169 8 C -0.115 4.115 9 C 0.062 3.938 10 H 0.108 0.892 11 C -0.226 4.226 12 N -0.404 5.404 13 C 0.400 3.600 14 O -0.471 6.471 15 N -0.397 5.397 16 C 0.012 3.988 17 C -0.158 4.158 18 C -0.015 4.015 19 C -0.560 4.560 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.172 4.172 28 C -0.011 4.011 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.226 0.774 41 H 0.226 0.774 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.070 0.930 49 H 0.095 0.905 50 H 0.096 0.904 51 H 0.091 0.909 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -31.402 7.285 10.090 33.778 hybrid contribution 0.244 -1.701 0.486 1.786 sum -31.158 5.585 10.576 33.374 Atomic orbital electron populations 1.23209 0.74331 1.03551 1.02754 1.86233 1.24211 1.31000 1.87022 1.18057 0.83184 0.82166 0.76274 1.90996 1.64222 1.34970 1.56152 1.46922 1.01825 1.08706 1.75850 1.21686 0.95283 0.83596 0.98816 1.22033 0.97059 0.98589 0.99179 1.21438 0.95528 0.95188 0.99308 1.20703 0.89361 0.89728 0.93996 0.89242 1.22311 1.00635 1.01847 0.97847 1.45267 1.14276 1.18093 1.62800 1.16040 0.80342 0.84050 0.79588 1.90918 1.76134 1.30980 1.49044 1.45396 1.16607 1.15601 1.62052 1.21499 0.79598 0.99810 0.97892 1.21886 0.99191 0.93777 1.00956 1.19034 0.88815 0.97417 0.96188 1.21243 0.99048 0.99510 1.36229 0.92611 1.25029 0.97597 0.96642 0.95207 1.69979 1.13501 1.31793 1.37943 0.86531 0.79672 0.83851 0.77888 1.19787 1.21014 1.21007 1.22079 0.97935 0.97985 0.99235 1.21774 0.93811 0.86499 0.98983 0.91852 0.91830 0.87895 0.90769 0.88396 0.89625 0.90517 0.89986 0.92441 0.91694 0.91826 0.77379 0.77415 0.92008 0.92003 0.92792 0.92806 0.96242 0.96231 0.92991 0.90496 0.90401 0.90913 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.29 10.56 101.05 1.07 1.36 16 2 O -0.37 -2.92 9.20 -40.32 -0.37 -3.29 16 3 C 0.65 6.13 8.43 54.06 0.46 6.59 16 4 O -0.57 -7.07 15.55 -19.28 -0.30 -7.37 16 5 N -0.59 -4.21 2.97 -178.54 -0.53 -4.74 16 6 C 0.13 0.77 6.43 -3.71 -0.02 0.75 16 7 C -0.13 -0.70 4.96 -26.62 -0.13 -0.83 16 8 C -0.10 -0.53 2.14 -90.58 -0.19 -0.73 16 9 C 0.17 1.43 2.40 -67.93 -0.16 1.26 16 10 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 11 C -0.17 -1.45 8.78 37.16 0.33 -1.12 16 12 N -0.75 -7.20 5.00 -58.68 -0.29 -7.49 16 13 C 0.70 10.17 8.53 -86.92 -0.74 9.42 16 14 O -0.59 -11.26 16.01 5.28 0.08 -11.18 16 15 N -0.74 -10.38 5.56 -65.22 -0.36 -10.75 16 16 C 0.14 2.38 5.67 -4.04 -0.02 2.35 16 17 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 18 C 0.02 0.58 4.97 -27.89 -0.14 0.45 16 19 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 23 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C -0.13 -0.64 4.82 -26.59 -0.13 -0.76 16 28 C 0.11 0.56 6.45 -3.69 -0.02 0.53 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.71 7.00 -51.93 -0.36 0.35 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.47 6.51 -51.93 -0.34 0.13 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.44 6.46 -51.93 -0.34 0.11 16 38 H 0.06 0.48 6.46 -51.93 -0.34 0.14 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.39 2.66 6.86 -40.82 -0.28 2.38 16 41 H 0.39 4.29 8.49 -40.82 -0.35 3.94 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.08 0.43 6.51 -51.93 -0.34 0.10 16 50 H 0.08 0.29 6.46 -51.93 -0.34 -0.04 16 51 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 52 H 0.09 0.46 6.92 -51.93 -0.36 0.10 16 LS Contribution 411.71 15.07 6.20 6.20 Total: -1.00 -35.91 411.71 -9.01 -44.91 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.89 Total: -0.19 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.27 Total: 3.51 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.45 Total: -48.95 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.59 Total: -21.84 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.91 -9.01 -44.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186859784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.475 kcal (2) G-P(sol) polarization free energy of solvation -35.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds