Wall clock time and date at job start Wed Apr 1 2020 01:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34638 * 116.99604 * 2 1 4 4 O 1.21514 * 120.00369 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99688 * 179.97438 * 3 2 1 6 6 C 1.46923 * 120.62994 * 180.02562 * 5 3 2 7 7 C 1.53191 * 108.77292 * 233.58200 * 6 5 3 8 8 C 1.53031 * 109.31433 * 305.36553 * 7 6 5 9 9 C 1.53004 * 109.46199 * 181.38512 * 8 7 6 10 10 H 1.08995 * 109.47216 * 59.99867 * 9 8 7 11 11 C 1.52999 * 109.47083 * 299.99863 * 9 8 7 12 12 N 1.46498 * 109.47065 * 179.97438 * 9 8 7 13 13 C 1.34777 * 119.99828 * 204.72115 * 12 9 8 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 9 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 9 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.47198 * 179.97438 * 16 15 13 18 18 C 1.52992 * 109.47321 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47554 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99751 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00505 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99687 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00201 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47135 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47080 * 119.99899 * 23 21 19 26 26 H 1.48497 * 109.47104 * 240.00206 * 23 21 19 27 27 C 1.53038 * 109.54033 * 61.36367 * 8 7 6 28 28 C 1.46922 * 120.62939 * 359.97085 * 5 3 2 29 29 H 1.08995 * 109.47513 * 300.00098 * 1 2 3 30 30 H 1.09007 * 109.46829 * 60.00089 * 1 2 3 31 31 H 1.08998 * 109.47088 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.58831 * 113.79720 * 6 5 3 33 33 H 1.09001 * 109.58907 * 353.36925 * 6 5 3 34 34 H 1.09000 * 109.49885 * 185.40858 * 7 6 5 35 35 H 1.09004 * 109.49539 * 65.31870 * 7 6 5 36 36 H 1.09003 * 109.46063 * 301.35614 * 8 7 6 37 37 H 1.08995 * 109.47098 * 300.00077 * 11 9 8 38 38 H 1.09003 * 109.47054 * 59.99725 * 11 9 8 39 39 H 1.08996 * 109.47245 * 179.97438 * 11 9 8 40 40 H 0.97001 * 120.00384 * 25.00562 * 12 9 8 41 41 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 42 42 H 1.09000 * 109.47602 * 299.99940 * 16 15 13 43 43 H 1.09006 * 109.46868 * 59.99976 * 16 15 13 44 44 H 1.09000 * 109.47211 * 300.00689 * 17 16 15 45 45 H 1.09007 * 109.46376 * 60.00147 * 17 16 15 46 46 H 1.09000 * 109.47686 * 300.00577 * 18 17 16 47 47 H 1.08998 * 109.47284 * 60.00513 * 18 17 16 48 48 H 0.97010 * 119.99934 * 180.02562 * 22 21 19 49 49 H 1.09006 * 109.49860 * 58.58550 * 27 8 7 50 50 H 1.08999 * 109.50362 * 178.68305 * 27 8 7 51 51 H 1.09002 * 109.59312 * 246.20192 * 28 5 3 52 52 H 1.08997 * 109.58670 * 6.49427 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0905 2.5719 0.0011 7 6 5.0824 2.6097 -1.1657 8 6 6.0241 1.4073 -1.0686 9 6 7.0384 1.4604 -2.2129 10 1 7.6168 2.3816 -2.1433 11 6 6.2990 1.4224 -3.5518 12 7 7.9403 0.3098 -2.1197 13 6 9.1729 0.3742 -2.6612 14 8 9.5381 1.3891 -3.2224 15 7 10.0007 -0.6864 -2.5804 16 6 11.3406 -0.6162 -3.1684 17 6 12.0686 -1.9421 -2.9385 18 6 13.4678 -1.8690 -3.5531 19 6 14.1846 -3.1752 -3.3273 20 1 13.6914 -3.9774 -2.7985 21 6 15.4701 -3.3462 -3.7955 22 7 16.0709 -2.3691 -4.4389 23 14 16.3583 -4.9655 -3.5161 24 1 15.4705 -5.8952 -2.7726 25 1 16.7170 -5.5659 -4.8262 26 1 17.5933 -4.7231 -2.7279 27 6 5.2133 0.1130 -1.1656 28 6 4.2229 0.0469 0.0017 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 4.6268 2.7033 0.9410 33 1 3.3563 3.3688 -0.1176 34 1 5.6630 3.5311 -1.1200 35 1 4.5368 2.5693 -2.1085 36 1 6.5511 1.4348 -0.1148 37 1 5.7206 0.5012 -3.6215 38 1 5.6282 2.2788 -3.6209 39 1 7.0215 1.4607 -4.3670 40 1 7.6490 -0.4999 -1.6720 41 1 9.7094 -1.4959 -2.1323 42 1 11.2584 -0.4273 -4.2388 43 1 11.9015 0.1921 -2.6990 44 1 12.1509 -2.1306 -1.8681 45 1 11.5078 -2.7505 -3.4077 46 1 13.3851 -1.6808 -4.6236 47 1 14.0288 -1.0606 -3.0844 48 1 16.9752 -2.4895 -4.7687 49 1 4.6664 0.0960 -2.1084 50 1 5.8870 -0.7427 -1.1199 51 1 4.7699 -0.0273 0.9416 52 1 3.5757 -0.8225 -0.1141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186859784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:37 Heat of formation + Delta-G solvation = -154.579051 kcal Electronic energy + Delta-G solvation = -29617.386594 eV Core-core repulsion = 25422.295373 eV Total energy + Delta-G solvation = -4195.091220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79520 -41.14998 -39.66607 -37.65112 -37.06139 -36.39261 -35.16243 -33.92369 -32.77556 -32.06852 -30.65693 -28.54353 -28.36609 -26.51624 -25.08237 -24.44478 -23.69796 -22.26823 -22.02815 -21.43161 -20.35936 -19.36427 -18.95579 -18.49669 -18.08805 -17.54240 -17.28041 -16.75837 -16.49110 -15.95309 -15.88083 -15.79665 -15.46591 -15.41729 -15.10356 -15.02331 -14.46961 -14.31500 -14.23869 -14.08343 -13.73124 -13.62151 -13.44786 -13.19879 -13.02998 -12.92374 -12.80457 -12.73060 -12.52067 -12.31361 -11.99439 -11.82307 -11.79486 -11.76460 -11.64507 -11.61245 -11.48283 -11.24521 -11.18368 -11.07830 -10.54399 -10.33015 -9.83870 -9.70058 -8.17841 -6.29198 1.16378 1.43183 1.43263 1.56389 1.68622 1.75713 2.21454 2.43424 2.93287 3.16175 3.35702 3.61067 3.73758 3.84516 4.09183 4.18521 4.21596 4.26792 4.34019 4.34561 4.36470 4.39771 4.46980 4.53199 4.59497 4.65552 4.72083 4.83120 4.84601 4.85817 4.94902 4.96780 4.99180 5.02051 5.07007 5.18863 5.20912 5.23787 5.28675 5.48027 5.50293 5.52754 5.58515 5.64582 5.73794 5.86573 6.08603 6.24418 6.24798 6.88597 7.17321 7.18859 7.40493 7.65997 8.94440 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024378 B = 0.001536 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.290056 B =18224.312032 C =18991.427704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.373 6.373 3 C 0.641 3.359 4 O -0.612 6.612 5 N -0.589 5.589 6 C 0.127 3.873 7 C -0.125 4.125 8 C -0.083 4.083 9 C 0.168 3.832 10 H 0.067 0.933 11 C -0.163 4.163 12 N -0.725 5.725 13 C 0.697 3.303 14 O -0.641 6.641 15 N -0.731 5.731 16 C 0.151 3.849 17 C -0.100 4.100 18 C 0.022 3.978 19 C -0.540 4.540 20 H 0.068 0.932 21 C -0.004 4.004 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.257 1.257 25 H -0.281 1.281 26 H -0.281 1.281 27 C -0.130 4.130 28 C 0.112 3.888 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.134 0.866 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.410 0.590 41 H 0.412 0.588 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.068 0.932 46 H -0.009 1.009 47 H -0.008 1.008 48 H 0.262 0.738 49 H 0.070 0.930 50 H 0.095 0.905 51 H 0.089 0.911 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.863 3.641 12.427 35.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.286 6.286 3 C 0.396 3.604 4 O -0.504 6.504 5 N -0.329 5.329 6 C 0.006 3.994 7 C -0.163 4.163 8 C -0.102 4.102 9 C 0.063 3.937 10 H 0.085 0.915 11 C -0.221 4.221 12 N -0.382 5.382 13 C 0.397 3.603 14 O -0.523 6.523 15 N -0.387 5.387 16 C 0.026 3.974 17 C -0.138 4.138 18 C -0.016 4.016 19 C -0.578 4.578 20 H 0.086 0.914 21 C -0.201 4.201 22 N -0.576 5.576 23 Si 0.792 3.208 24 H -0.181 1.181 25 H -0.207 1.207 26 H -0.206 1.206 27 C -0.168 4.168 28 C -0.010 4.010 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.248 0.752 41 H 0.248 0.752 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.010 0.990 47 H 0.010 0.990 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.114 0.886 51 H 0.108 0.892 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -32.653 4.854 11.851 35.075 hybrid contribution 0.561 -0.923 -0.060 1.082 sum -32.092 3.931 11.791 34.415 Atomic orbital electron populations 1.23460 0.73085 1.05497 1.02362 1.86238 1.25493 1.30095 1.86747 1.18337 0.83852 0.82110 0.76112 1.90966 1.65217 1.36210 1.58016 1.47104 1.01284 1.09783 1.74758 1.21729 0.94911 0.82951 0.99769 1.21983 0.96782 0.98959 0.98598 1.21337 0.94752 0.95850 0.98258 1.20769 0.89354 0.88318 0.95275 0.91498 1.22261 1.00058 1.03187 0.96628 1.45073 1.12530 1.19208 1.61379 1.16214 0.81456 0.83246 0.79425 1.90895 1.77347 1.32861 1.51182 1.45019 1.15210 1.16492 1.61951 1.21036 0.81203 0.98288 0.96914 1.21580 0.95849 0.94988 1.01344 1.18957 0.92097 0.95854 0.94673 1.21721 0.99571 1.00484 1.35975 0.91431 1.26022 0.98716 1.00539 0.94856 1.70125 1.13992 1.34266 1.39175 0.85364 0.78340 0.79184 0.77919 1.18112 1.20692 1.20649 1.22063 0.97927 0.97912 0.98898 1.21920 0.93628 0.85651 0.99781 0.92189 0.92361 0.84751 0.89143 0.89940 0.88918 0.91224 0.88881 0.91078 0.90467 0.95100 0.75182 0.75172 0.93808 0.93667 0.91249 0.91357 0.99027 0.98955 0.92877 0.91145 0.88645 0.89245 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.46 10.56 113.37 1.20 1.66 16 2 O -0.37 -5.39 9.20 -55.47 -0.51 -5.90 16 3 C 0.64 11.63 8.43 129.79 1.09 12.72 16 4 O -0.61 -15.19 15.55 19.80 0.31 -14.88 16 5 N -0.59 -7.38 2.97 -949.17 -2.82 -10.20 16 6 C 0.13 1.36 6.43 86.36 0.56 1.91 16 7 C -0.12 -1.14 4.96 30.67 0.15 -0.99 16 8 C -0.08 -0.72 2.14 -10.77 -0.02 -0.74 16 9 C 0.17 2.62 2.40 44.99 0.11 2.73 16 10 H 0.07 1.41 7.58 -2.39 -0.02 1.39 16 11 C -0.16 -2.67 8.78 71.98 0.63 -2.04 16 12 N -0.72 -12.47 5.00 -457.81 -2.29 -14.76 16 13 C 0.70 19.60 8.53 179.05 1.53 21.13 16 14 O -0.64 -24.75 16.01 -4.01 -0.06 -24.81 16 15 N -0.73 -19.33 5.56 -478.52 -2.66 -21.99 16 16 C 0.15 5.29 5.67 86.38 0.49 5.78 16 17 C -0.10 -3.76 5.27 30.59 0.16 -3.59 16 18 C 0.02 1.13 4.97 29.84 0.15 1.28 16 19 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 20 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 21 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 22 N -0.94 -56.96 13.29 21.45 0.28 -56.68 16 23 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 C -0.13 -0.83 4.82 30.69 0.15 -0.68 16 28 C 0.11 0.79 6.45 86.38 0.56 1.34 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.08 1.18 7.00 -2.39 -0.02 1.16 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.76 6.51 -2.38 -0.02 0.74 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.96 6.46 -2.39 -0.02 0.95 16 38 H 0.08 1.07 6.46 -2.39 -0.02 1.05 16 39 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.41 4.13 6.86 -92.71 -0.64 3.49 16 41 H 0.41 7.75 8.49 -92.71 -0.79 6.96 16 42 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 46 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 47 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 48 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 49 H 0.07 0.59 6.51 -2.38 -0.02 0.58 16 50 H 0.10 0.30 6.46 -2.39 -0.02 0.29 16 51 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 52 H 0.10 0.67 6.92 -2.39 -0.02 0.65 16 Total: -1.00 -80.49 411.71 1.22 -79.27 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -0.50 Total: 13.33 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 7.44 Total: 11.17 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -7.49 Total: -103.62 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -0.27 Total: -45.59 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -80.49 1.22 -79.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186859784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.311 kcal (2) G-P(sol) polarization free energy of solvation -80.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds