Wall clock time and date at job start Wed Apr 1 2020 01:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34637 * 116.99953 * 2 1 4 4 O 1.21507 * 119.99871 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00004 * 180.02562 * 3 2 1 6 6 C 1.46929 * 120.63312 * 179.97438 * 5 3 2 7 7 C 1.53185 * 108.77722 * 233.58965 * 6 5 3 8 8 C 1.53047 * 109.31383 * 305.36230 * 7 6 5 9 9 C 1.52999 * 109.45869 * 181.38911 * 8 7 6 10 10 H 1.08996 * 109.46929 * 299.96521 * 9 8 7 11 11 C 1.52997 * 109.47317 * 59.97417 * 9 8 7 12 12 N 1.46506 * 109.46684 * 179.97438 * 9 8 7 13 13 C 1.34775 * 119.99693 * 155.00124 * 12 9 8 14 14 O 1.21577 * 120.00380 * 359.97438 * 13 12 9 15 15 N 1.34784 * 119.99632 * 179.97438 * 13 12 9 16 16 C 1.46502 * 119.99876 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.46932 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.47033 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.46947 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00260 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99511 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00008 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99775 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46974 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47268 * 119.99755 * 23 21 19 26 26 H 1.48495 * 109.47137 * 239.99965 * 23 21 19 27 27 C 1.53041 * 109.52375 * 61.37357 * 8 7 6 28 28 C 1.46929 * 120.63270 * 359.97438 * 5 3 2 29 29 H 1.09002 * 109.47168 * 300.00108 * 1 2 3 30 30 H 1.09000 * 109.47203 * 60.00243 * 1 2 3 31 31 H 1.09004 * 109.47100 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.58288 * 113.79503 * 6 5 3 33 33 H 1.09002 * 109.57995 * 353.37696 * 6 5 3 34 34 H 1.09005 * 109.49632 * 185.41213 * 7 6 5 35 35 H 1.08993 * 109.50059 * 65.31494 * 7 6 5 36 36 H 1.08995 * 109.45582 * 301.36124 * 8 7 6 37 37 H 1.09002 * 109.47153 * 299.99641 * 11 9 8 38 38 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 39 39 H 1.09004 * 109.47261 * 59.99813 * 11 9 8 40 40 H 0.97000 * 120.00117 * 334.99772 * 12 9 8 41 41 H 0.96995 * 119.99663 * 359.97438 * 15 13 12 42 42 H 1.09000 * 109.46889 * 299.99849 * 16 15 13 43 43 H 1.08999 * 109.47178 * 59.99886 * 16 15 13 44 44 H 1.09001 * 109.47314 * 300.00216 * 17 16 15 45 45 H 1.09005 * 109.47115 * 60.00419 * 17 16 15 46 46 H 1.09000 * 109.46880 * 299.99942 * 18 17 16 47 47 H 1.08999 * 109.47085 * 59.99917 * 18 17 16 48 48 H 0.97005 * 119.99958 * 179.97438 * 22 21 19 49 49 H 1.08991 * 109.49676 * 58.58037 * 27 8 7 50 50 H 1.08996 * 109.49337 * 178.67966 * 27 8 7 51 51 H 1.09004 * 109.58389 * 246.20306 * 28 5 3 52 52 H 1.08997 * 109.58359 * 6.47934 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0906 2.5719 -0.0011 7 6 5.0815 2.6092 -1.1687 8 6 6.0234 1.4067 -1.0718 9 6 7.0366 1.4595 -2.2170 10 1 6.5092 1.4315 -3.1704 11 6 7.8482 2.7529 -2.1207 12 7 7.9388 0.3089 -2.1241 13 6 8.5601 -0.1510 -3.2281 14 8 8.3717 0.3886 -4.3011 15 7 9.3904 -1.2093 -3.1425 16 6 10.0655 -1.7096 -4.3426 17 6 10.9433 -2.9067 -3.9723 18 6 11.6478 -3.4297 -5.2258 19 6 12.5129 -4.6084 -4.8609 20 1 12.5557 -4.9507 -3.8375 21 6 13.2499 -5.2499 -5.8338 22 7 13.1974 -4.8335 -7.0801 23 14 14.3217 -6.7115 -5.3817 24 1 14.2049 -6.9794 -3.9257 25 1 13.8753 -7.9067 -6.1417 26 1 15.7364 -6.4108 -5.7183 27 6 5.2121 0.1126 -1.1679 28 6 4.2229 0.0468 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.6274 2.7036 0.9383 33 1 3.3561 3.3686 -0.1195 34 1 5.6621 3.5306 -1.1238 35 1 4.5352 2.5684 -2.1109 36 1 6.5509 1.4347 -0.1185 37 1 7.1770 3.6090 -2.1898 38 1 8.5704 2.7902 -2.9363 39 1 8.3757 2.7808 -1.1672 40 1 8.0888 -0.1219 -1.2680 41 1 9.5410 -1.6396 -2.2863 42 1 9.3208 -2.0179 -5.0765 43 1 10.6873 -0.9205 -4.7654 44 1 11.6879 -2.5981 -3.2386 45 1 10.3217 -3.6960 -3.5494 46 1 10.9028 -3.7384 -5.9591 47 1 12.2692 -2.6406 -5.6492 48 1 13.7162 -5.2846 -7.7645 49 1 4.6646 0.0956 -2.1102 50 1 5.8857 -0.7431 -1.1225 51 1 4.7706 -0.0276 0.9390 52 1 3.5757 -0.8225 -0.1160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186859800.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:40 Heat of formation + Delta-G solvation = -157.053641 kcal Electronic energy + Delta-G solvation = -29644.303223 eV Core-core repulsion = 25449.104697 eV Total energy + Delta-G solvation = -4195.198527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.78154 -41.13354 -39.59837 -37.64522 -37.07840 -36.39774 -35.16324 -33.91607 -32.78245 -32.18650 -30.76882 -28.55677 -28.35711 -26.47476 -25.08420 -24.25261 -23.26605 -22.26993 -22.01813 -21.55070 -20.83162 -19.41861 -18.90669 -18.50657 -18.11167 -17.61838 -17.35121 -16.75329 -16.49433 -15.90157 -15.82225 -15.57434 -15.49953 -15.30839 -15.06441 -15.02857 -14.55628 -14.37729 -14.23974 -13.96017 -13.71310 -13.65484 -13.52196 -13.39366 -12.95716 -12.94002 -12.75988 -12.52367 -12.46206 -12.31464 -12.23194 -11.82858 -11.81501 -11.66828 -11.65523 -11.59977 -11.54089 -11.33398 -11.23954 -11.07195 -10.54741 -10.31724 -9.83440 -9.69313 -8.18121 -6.29505 1.15917 1.42956 1.43022 1.56209 1.66821 1.76381 2.22319 2.43167 2.91696 3.15799 3.36236 3.57378 3.74609 3.86604 4.06976 4.20420 4.26057 4.29614 4.31950 4.34043 4.34289 4.39678 4.45442 4.55733 4.59112 4.66819 4.70551 4.81317 4.84641 4.88911 4.93854 4.98728 4.99154 4.99964 5.08607 5.16274 5.19933 5.27600 5.35754 5.41760 5.50195 5.52067 5.58762 5.66804 5.73405 5.86245 6.10039 6.22069 6.24451 6.88325 7.15573 7.20726 7.40137 7.67173 8.94157 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018221 B = 0.001630 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.342589 B =17175.156489 C =18179.292954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.375 6.375 3 C 0.640 3.360 4 O -0.611 6.611 5 N -0.591 5.591 6 C 0.127 3.873 7 C -0.124 4.124 8 C -0.081 4.081 9 C 0.167 3.833 10 H 0.055 0.945 11 C -0.162 4.162 12 N -0.723 5.723 13 C 0.697 3.303 14 O -0.643 6.643 15 N -0.731 5.731 16 C 0.151 3.849 17 C -0.099 4.099 18 C 0.022 3.978 19 C -0.539 4.539 20 H 0.068 0.932 21 C -0.005 4.005 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.257 1.257 25 H -0.281 1.281 26 H -0.281 1.281 27 C -0.127 4.127 28 C 0.114 3.886 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.133 0.867 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.053 0.947 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.028 0.972 39 H 0.076 0.924 40 H 0.413 0.587 41 H 0.412 0.588 42 H 0.044 0.956 43 H 0.043 0.957 44 H 0.068 0.932 45 H 0.069 0.931 46 H -0.009 1.009 47 H -0.009 1.009 48 H 0.262 0.738 49 H 0.046 0.954 50 H 0.091 0.909 51 H 0.099 0.901 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.682 13.277 22.904 34.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.288 6.288 3 C 0.395 3.605 4 O -0.503 6.503 5 N -0.331 5.331 6 C 0.006 3.994 7 C -0.163 4.163 8 C -0.100 4.100 9 C 0.062 3.938 10 H 0.073 0.927 11 C -0.220 4.220 12 N -0.379 5.379 13 C 0.397 3.603 14 O -0.525 6.525 15 N -0.386 5.386 16 C 0.026 3.974 17 C -0.137 4.137 18 C -0.016 4.016 19 C -0.577 4.577 20 H 0.086 0.914 21 C -0.202 4.202 22 N -0.576 5.576 23 Si 0.792 3.208 24 H -0.181 1.181 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.165 4.165 28 C -0.008 4.008 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.071 0.929 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.250 0.750 41 H 0.249 0.751 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.010 0.990 47 H 0.010 0.990 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.109 0.891 51 H 0.117 0.883 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.063 13.988 21.781 34.013 hybrid contribution 0.534 -0.985 -0.186 1.136 sum -21.529 13.004 21.595 33.150 Atomic orbital electron populations 1.23458 0.73066 1.05474 1.02403 1.86243 1.25556 1.30279 1.86747 1.18361 0.83948 0.82081 0.76151 1.90957 1.65200 1.36123 1.58043 1.47157 1.01256 1.09955 1.74716 1.21795 0.94913 0.82659 1.00020 1.22006 0.96821 0.99420 0.98043 1.21375 0.94680 0.95006 0.98947 1.20798 0.89379 0.84556 0.99083 0.92652 1.22229 1.00436 0.97326 1.02056 1.44987 1.48837 1.34918 1.09204 1.16199 0.79226 0.80360 0.84512 1.90893 1.69279 1.62566 1.29717 1.45010 1.48181 1.33006 1.12446 1.21026 0.94356 0.95598 0.86454 1.21576 0.97741 0.95426 0.98970 1.18963 0.94339 0.94906 0.93396 1.21720 1.26292 1.14575 0.95113 0.91398 1.26037 0.98578 1.00746 0.94863 1.70126 1.42702 1.42736 1.02013 0.85357 0.78013 0.78446 0.78954 1.18082 1.20684 1.20661 1.21939 0.97900 0.98711 0.97962 1.21890 0.93508 0.85552 0.99828 0.91923 0.92482 0.84859 0.88191 0.90043 0.87601 0.92852 0.87174 0.89818 0.95260 0.90508 0.75041 0.75127 0.93803 0.93839 0.91299 0.91266 0.99015 0.99026 0.92878 0.93498 0.89102 0.88337 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 10.56 113.37 1.20 1.75 16 2 O -0.37 -6.25 9.20 -55.46 -0.51 -6.76 16 3 C 0.64 12.66 8.43 129.79 1.09 13.75 16 4 O -0.61 -15.89 15.54 19.82 0.31 -15.58 16 5 N -0.59 -8.12 2.97 -949.32 -2.82 -10.95 16 6 C 0.13 1.30 6.43 86.36 0.56 1.86 16 7 C -0.12 -1.12 5.04 30.67 0.15 -0.96 16 8 C -0.08 -0.68 1.79 -10.76 -0.02 -0.70 16 9 C 0.17 2.59 2.16 44.99 0.10 2.68 16 10 H 0.06 1.26 7.58 -2.39 -0.02 1.24 16 11 C -0.16 -2.38 9.13 71.98 0.66 -1.72 16 12 N -0.72 -12.19 4.37 -457.82 -2.00 -14.19 16 13 C 0.70 19.58 8.53 179.05 1.53 21.11 16 14 O -0.64 -25.05 16.00 -3.96 -0.06 -25.12 16 15 N -0.73 -19.26 5.56 -478.54 -2.66 -21.92 16 16 C 0.15 5.31 5.67 86.38 0.49 5.80 16 17 C -0.10 -3.74 5.27 30.59 0.16 -3.58 16 18 C 0.02 1.12 4.97 29.85 0.15 1.27 16 19 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 20 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 21 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 22 N -0.94 -57.08 13.29 21.45 0.28 -56.80 16 23 Si 0.97 43.49 29.54 68.60 2.03 45.51 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 C -0.13 -1.26 5.22 30.66 0.16 -1.10 16 28 C 0.11 1.02 6.45 86.35 0.56 1.57 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 1.15 7.00 -2.39 -0.02 1.13 16 34 H 0.11 0.60 6.36 -2.38 -0.02 0.58 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.08 0.92 6.40 -2.39 -0.02 0.91 16 38 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.41 3.84 8.40 -92.71 -0.78 3.07 16 41 H 0.41 7.68 8.49 -92.71 -0.79 6.89 16 42 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 46 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 47 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 48 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 49 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.09 0.76 7.41 -2.39 -0.02 0.75 16 51 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 52 H 0.09 0.91 6.92 -2.39 -0.02 0.89 16 Total: -1.00 -81.90 416.89 1.39 -80.51 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -0.65 Total: 12.95 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 7.48 Total: 12.33 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -7.20 Total: -103.85 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.27 Total: -47.46 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -81.90 1.39 -80.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186859800.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.541 kcal (2) G-P(sol) polarization free energy of solvation -81.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds