Wall clock time and date at job start Wed Apr 1 2020 01:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.46691 * 2 1 4 4 C 1.52997 * 109.46975 * 119.99694 * 2 1 3 5 5 H 1.09004 * 109.46923 * 62.11777 * 4 2 1 6 6 C 1.50699 * 109.47601 * 302.11713 * 4 2 1 7 7 O 1.21286 * 119.99648 * 256.83214 * 6 4 2 8 8 N 1.34769 * 120.00126 * 76.82713 * 6 4 2 9 9 C 1.46502 * 120.00256 * 175.00916 * 8 6 4 10 10 C 1.50698 * 109.47207 * 180.02562 * 9 8 6 11 11 O 1.21289 * 120.00503 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99827 * 180.02562 * 10 9 8 13 13 C 1.37095 * 120.00164 * 180.02562 * 12 10 9 14 14 H 1.08001 * 119.99997 * 359.97438 * 13 12 10 15 15 C 1.38952 * 120.00405 * 180.02562 * 13 12 10 16 16 N 1.31406 * 120.00669 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99689 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47340 * 90.00463 * 17 15 13 19 19 H 1.48506 * 109.47380 * 210.00443 * 17 15 13 20 20 H 1.48508 * 109.47310 * 330.00271 * 17 15 13 21 21 N 1.46904 * 109.46931 * 182.11484 * 4 2 1 22 22 C 1.47012 * 110.99908 * 182.65774 * 21 4 2 23 23 C 1.53101 * 109.25472 * 182.39201 * 22 21 4 24 24 H 1.09001 * 109.50706 * 63.09133 * 23 22 21 25 25 C 1.53004 * 109.50280 * 183.17513 * 23 22 21 26 26 O 1.43013 * 109.25937 * 303.14730 * 23 22 21 27 27 C 1.43021 * 113.73444 * 58.67267 * 26 23 22 28 28 H 1.09005 * 109.50537 * 61.26784 * 27 26 23 29 29 C 1.52999 * 109.50219 * 181.39075 * 27 26 23 30 30 C 1.47018 * 110.99604 * 306.29308 * 21 4 2 31 31 H 1.09000 * 109.46756 * 298.36857 * 1 2 3 32 32 H 1.08992 * 109.46840 * 58.36955 * 1 2 3 33 33 H 1.08998 * 109.46756 * 178.37124 * 1 2 3 34 34 H 1.08992 * 109.47011 * 239.99994 * 2 1 3 35 35 H 1.08998 * 109.46878 * 183.03494 * 3 2 1 36 36 H 1.09002 * 109.47381 * 303.02736 * 3 2 1 37 37 H 1.08995 * 109.47458 * 63.03642 * 3 2 1 38 38 H 0.96999 * 120.00387 * 355.00822 * 8 6 4 39 39 H 1.09003 * 109.46544 * 300.00509 * 9 8 6 40 40 H 1.08994 * 109.46965 * 59.99798 * 9 8 6 41 41 H 0.97009 * 120.00238 * 359.97438 * 12 10 9 42 42 H 0.96998 * 120.00539 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.50702 * 302.32709 * 22 21 4 44 44 H 1.09001 * 109.50509 * 62.45844 * 22 21 4 45 45 H 1.08999 * 109.47594 * 59.99598 * 25 23 22 46 46 H 1.08998 * 109.46631 * 180.02562 * 25 23 22 47 47 H 1.09002 * 109.47079 * 299.99754 * 25 23 22 48 48 H 1.08999 * 109.47511 * 60.00462 * 29 27 26 49 49 H 1.09007 * 109.47178 * 179.97438 * 29 27 26 50 50 H 1.09001 * 109.47691 * 300.00150 * 29 27 26 51 51 H 1.08999 * 109.50735 * 297.53908 * 30 21 4 52 52 H 1.08998 * 109.51170 * 57.67549 * 30 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.7080 -1.7592 1.2305 6 6 1.4954 -0.0417 2.4792 7 8 2.2081 0.6891 3.1340 8 7 0.2163 -0.2462 2.8513 9 6 -0.2822 0.3254 4.1048 10 6 -1.7309 -0.0480 4.2860 11 8 -2.2920 -0.7247 3.4503 12 7 -2.4034 0.3707 5.3764 13 6 -3.7211 0.0305 5.5416 14 1 -4.2205 -0.5726 4.7978 15 6 -4.4146 0.4627 6.6655 16 7 -5.6778 0.1371 6.8237 17 14 -3.5511 1.5065 7.9516 18 1 -3.7069 2.9431 7.6093 19 1 -4.1523 1.2474 9.2846 20 1 -2.1077 1.1590 7.9836 21 7 3.5082 -0.6771 1.2751 22 6 4.0372 -1.4159 2.4307 23 6 5.5632 -1.2943 2.4522 24 1 5.8432 -0.2494 2.5863 25 6 6.1258 -2.1262 3.6065 26 8 6.0923 -1.7754 1.2137 27 6 5.5986 -1.0776 0.0670 28 1 5.8797 -0.0265 0.1317 29 6 6.1973 -1.6904 -1.2007 30 6 4.0730 -1.1971 0.0213 31 1 -0.3633 0.4883 0.9043 32 1 -0.3633 0.5389 -0.8750 33 1 -0.3633 -1.0273 -0.0292 34 1 1.8934 -0.5138 -0.8899 35 1 3.1286 1.4431 -0.0544 36 1 1.6330 1.9718 -0.8616 37 1 1.7218 1.9404 0.9159 38 1 -0.3743 -0.7717 2.2894 39 1 0.3005 -0.0650 4.9391 40 1 -0.1877 1.4108 4.0720 41 1 -1.9548 0.9122 6.0447 42 1 -6.1618 0.4384 7.6084 43 1 3.6258 -0.9978 3.3494 44 1 3.7569 -2.4662 2.3505 45 1 5.8468 -3.1711 3.4712 46 1 7.2122 -2.0388 3.6216 47 1 5.7192 -1.7608 4.5496 48 1 5.9140 -2.7409 -1.2653 49 1 5.8203 -1.1585 -2.0743 50 1 7.2837 -1.6085 -1.1658 51 1 3.7932 -2.2439 -0.0974 52 1 3.6877 -0.6192 -0.8188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344176465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:56 Heat of formation + Delta-G solvation = -133.382326 kcal Electronic energy + Delta-G solvation = -31623.490397 eV Core-core repulsion = 27429.318336 eV Total energy + Delta-G solvation = -4194.172061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.87021 -40.64141 -39.92477 -37.63272 -36.34886 -35.63578 -34.80285 -34.54694 -33.84464 -31.25783 -30.05597 -28.23966 -28.11847 -27.56656 -26.22142 -24.24065 -23.16483 -22.12907 -21.49246 -21.45607 -20.88756 -20.20764 -18.31712 -17.79982 -17.55848 -17.32685 -17.18462 -16.78639 -16.54535 -16.37744 -15.90664 -15.75734 -15.49159 -15.09738 -14.96269 -14.90801 -14.57910 -14.35408 -14.12748 -13.97920 -13.79701 -13.62824 -13.50873 -13.30448 -13.03946 -12.99705 -12.90399 -12.85543 -12.66690 -12.51395 -12.46265 -12.06482 -12.01997 -11.97533 -11.91056 -11.79283 -11.59845 -11.37406 -10.79097 -10.67698 -10.51037 -10.34733 -10.12112 -9.42610 -8.46923 -6.08859 1.29232 1.32393 1.42076 1.54854 1.77515 1.86985 2.18792 2.61836 2.73689 2.87015 3.09174 3.51218 3.72609 3.78760 3.85089 3.94406 3.98985 4.08614 4.10770 4.14212 4.20707 4.31924 4.36578 4.38729 4.45054 4.47502 4.54979 4.64293 4.66662 4.71349 4.75829 4.77931 4.95202 4.97275 5.01909 5.05421 5.12207 5.13682 5.20327 5.23604 5.30917 5.36010 5.45938 5.47002 5.75232 5.86705 5.88907 6.27293 6.46378 6.49345 6.76722 7.15001 7.28230 7.76007 8.69394 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.002514 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.498953 B =11134.535551 C =12061.736817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.078 4.078 3 C -0.134 4.134 4 C 0.075 3.925 5 H 0.071 0.929 6 C 0.524 3.476 7 O -0.551 6.551 8 N -0.713 5.713 9 C 0.117 3.883 10 C 0.445 3.555 11 O -0.612 6.612 12 N -0.578 5.578 13 C -0.330 4.330 14 H 0.064 0.936 15 C -0.008 4.008 16 N -0.925 5.925 17 Si 0.958 3.042 18 H -0.257 1.257 19 H -0.273 1.273 20 H -0.233 1.233 21 N -0.519 5.519 22 C 0.023 3.977 23 C 0.097 3.903 24 H 0.059 0.941 25 C -0.140 4.140 26 O -0.394 6.394 27 C 0.086 3.914 28 H 0.063 0.937 29 C -0.138 4.138 30 C 0.022 3.978 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.412 0.588 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.391 0.609 42 H 0.281 0.719 43 H 0.078 0.922 44 H 0.037 0.963 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.093 0.907 50 H 0.066 0.934 51 H 0.044 0.956 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.039 -0.474 -13.441 28.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.097 4.097 3 C -0.192 4.192 4 C -0.036 4.036 5 H 0.088 0.912 6 C 0.311 3.689 7 O -0.429 6.429 8 N -0.370 5.370 9 C -0.011 4.011 10 C 0.233 3.767 11 O -0.498 6.498 12 N -0.218 5.218 13 C -0.459 4.459 14 H 0.082 0.918 15 C -0.208 4.208 16 N -0.565 5.565 17 Si 0.778 3.222 18 H -0.181 1.181 19 H -0.198 1.198 20 H -0.157 1.157 21 N -0.243 5.243 22 C -0.105 4.105 23 C 0.039 3.961 24 H 0.077 0.923 25 C -0.198 4.198 26 O -0.314 6.314 27 C 0.029 3.971 28 H 0.081 0.919 29 C -0.196 4.196 30 C -0.106 4.106 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.252 0.748 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.227 0.773 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.080 0.920 49 H 0.112 0.888 50 H 0.085 0.915 51 H 0.062 0.938 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 25.238 -0.074 -13.344 28.548 hybrid contribution -1.249 -0.403 0.958 1.625 sum 23.988 -0.476 -12.386 27.001 Atomic orbital electron populations 1.22152 0.94452 1.02854 1.03007 1.21171 0.95725 0.97263 0.95510 1.21701 1.01888 0.94602 1.00972 1.21715 0.89056 0.99032 0.93822 0.91178 1.20672 0.80739 0.81329 0.86179 1.90661 1.58490 1.37886 1.55834 1.46057 1.12483 1.55094 1.23346 1.20868 0.90591 1.00750 0.88849 1.20478 0.89291 0.83975 0.82981 1.90526 1.70840 1.43620 1.44840 1.41942 1.10626 1.48233 1.21008 1.19021 0.86062 1.32906 1.07944 0.91771 1.26053 0.96186 0.98713 0.99833 1.69772 1.10416 1.45953 1.30313 0.85463 0.80001 0.79053 0.77717 1.18130 1.19800 1.15676 1.61903 1.04021 1.55197 1.03196 1.22862 0.96760 0.95864 0.95005 1.22068 0.90700 0.98241 0.85121 0.92316 1.21733 1.02081 1.00007 0.95947 1.87960 1.68426 1.60578 1.14474 1.22299 0.91608 0.96441 0.86802 0.91919 1.21744 1.01639 1.01645 0.94534 1.23031 0.95801 0.99249 0.92471 0.93494 0.90345 0.91665 0.87389 0.91484 0.91430 0.95161 0.74794 0.87986 0.88011 0.77294 0.90913 0.90381 0.94511 0.91951 0.90861 0.90266 0.92036 0.88830 0.91500 0.93769 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 8.04 71.99 0.58 -2.75 16 2 C -0.08 -1.40 2.20 -10.79 -0.02 -1.42 16 3 C -0.13 -2.63 8.67 71.98 0.62 -2.00 16 4 C 0.08 1.65 1.76 44.17 0.08 1.73 16 5 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 6 C 0.52 14.82 4.74 87.66 0.42 15.23 16 7 O -0.55 -18.34 14.81 -3.05 -0.05 -18.38 16 8 N -0.71 -21.48 4.27 -466.80 -2.00 -23.48 16 9 C 0.12 3.79 6.16 85.63 0.53 4.32 16 10 C 0.45 19.15 7.85 87.66 0.69 19.84 16 11 O -0.61 -31.02 15.24 -3.06 -0.05 -31.07 16 12 N -0.58 -26.35 5.09 -306.99 -1.56 -27.91 16 13 C -0.33 -18.60 10.16 84.04 0.85 -17.74 16 14 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 15 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 16 N -0.92 -54.02 13.96 21.66 0.30 -53.72 16 17 Si 0.96 37.90 27.74 68.60 1.90 39.81 16 18 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.23 -7.89 6.52 99.48 0.65 -7.24 16 21 N -0.52 -11.02 3.53 -874.35 -3.09 -14.11 16 22 C 0.02 0.53 4.59 86.32 0.40 0.92 16 23 C 0.10 1.99 3.43 30.63 0.10 2.10 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 C -0.14 -2.36 9.57 71.98 0.69 -1.67 16 26 O -0.39 -8.20 10.11 -148.98 -1.51 -9.71 16 27 C 0.09 1.40 3.43 30.63 0.10 1.51 16 28 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 29 C -0.14 -1.53 9.57 71.98 0.69 -0.84 16 30 C 0.02 0.35 4.22 86.31 0.36 0.71 16 31 H 0.05 1.19 5.56 -2.39 -0.01 1.18 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 1.40 6.40 -2.39 -0.02 1.39 16 35 H 0.07 1.29 7.09 -2.39 -0.02 1.28 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.03 0.76 7.02 -2.39 -0.02 0.74 16 38 H 0.41 12.70 5.70 -92.71 -0.53 12.17 16 39 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.39 15.01 5.76 -92.70 -0.53 14.48 16 42 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.08 2.08 6.16 -2.39 -0.01 2.06 16 44 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 50 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.11 1.35 5.70 -2.39 -0.01 1.34 16 Total: -1.00 -71.83 400.72 0.32 -71.50 By element: Atomic # 1 Polarization: 47.28 SS G_CDS: -0.19 Total: 47.09 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 6.56 Total: 19.99 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -6.34 Total: -119.22 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -1.60 Total: -59.17 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 1.90 Total: 39.81 kcal Total: -71.83 0.32 -71.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344176465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.880 kcal (2) G-P(sol) polarization free energy of solvation -71.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds