Wall clock time and date at job start Wed Apr 1 2020 01:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47372 * 2 1 4 4 C 1.53000 * 109.47417 * 120.00408 * 2 1 3 5 5 H 1.08999 * 109.46802 * 300.01090 * 4 2 1 6 6 C 1.50701 * 109.46935 * 60.00255 * 4 2 1 7 7 O 1.21278 * 120.00174 * 112.92939 * 6 4 2 8 8 N 1.34786 * 120.00132 * 292.92875 * 6 4 2 9 9 C 1.46496 * 120.00134 * 176.83696 * 8 6 4 10 10 C 1.50697 * 109.47263 * 179.97438 * 9 8 6 11 11 O 1.21296 * 119.99970 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00194 * 180.02562 * 10 9 8 13 13 C 1.37094 * 120.00375 * 180.02562 * 12 10 9 14 14 H 1.08006 * 120.00041 * 0.02562 * 13 12 10 15 15 C 1.38945 * 120.00468 * 179.97438 * 13 12 10 16 16 N 1.31408 * 119.99914 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00140 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47244 * 90.00149 * 17 15 13 19 19 H 1.48504 * 109.47270 * 209.99761 * 17 15 13 20 20 H 1.48495 * 109.47206 * 330.00138 * 17 15 13 21 21 N 1.46896 * 109.47388 * 180.02562 * 4 2 1 22 22 C 1.47008 * 111.00024 * 179.05614 * 21 4 2 23 23 C 1.53100 * 109.26055 * 182.39206 * 22 21 4 24 24 H 1.09000 * 109.50471 * 63.12791 * 23 22 21 25 25 C 1.52999 * 109.50788 * 183.21824 * 23 22 21 26 26 O 1.43020 * 109.25590 * 303.15156 * 23 22 21 27 27 C 1.43016 * 113.73886 * 58.67061 * 26 23 22 28 28 H 1.08998 * 109.50983 * 61.26248 * 27 26 23 29 29 C 1.52996 * 109.50563 * 181.35327 * 27 26 23 30 30 C 1.47014 * 110.99703 * 302.68911 * 21 4 2 31 31 H 1.08998 * 109.46635 * 303.41063 * 1 2 3 32 32 H 1.08998 * 109.46756 * 63.40582 * 1 2 3 33 33 H 1.08993 * 109.47478 * 183.41050 * 1 2 3 34 34 H 1.09002 * 109.46607 * 240.00308 * 2 1 3 35 35 H 1.08996 * 109.47244 * 185.25879 * 3 2 1 36 36 H 1.08994 * 109.47262 * 305.26078 * 3 2 1 37 37 H 1.09004 * 109.46954 * 65.25760 * 3 2 1 38 38 H 0.97002 * 119.99422 * 357.11982 * 8 6 4 39 39 H 1.08997 * 109.47479 * 300.00328 * 9 8 6 40 40 H 1.09004 * 109.46687 * 60.00405 * 9 8 6 41 41 H 0.97003 * 120.00114 * 359.97438 * 12 10 9 42 42 H 0.96999 * 120.00448 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.50803 * 302.32724 * 22 21 4 44 44 H 1.09005 * 109.50624 * 62.45582 * 22 21 4 45 45 H 1.08994 * 109.47280 * 59.99847 * 25 23 22 46 46 H 1.09002 * 109.46802 * 179.97438 * 25 23 22 47 47 H 1.08995 * 109.46828 * 299.99884 * 25 23 22 48 48 H 1.09003 * 109.47524 * 59.99727 * 29 27 26 49 49 H 1.09006 * 109.47034 * 179.97438 * 29 27 26 50 50 H 1.08995 * 109.47234 * 299.99564 * 29 27 26 51 51 H 1.08995 * 109.51022 * 297.54049 * 30 21 4 52 52 H 1.09001 * 109.50702 * 57.67459 * 30 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6766 -0.2076 2.1392 6 6 1.5378 -2.1422 1.2490 7 8 2.3184 -3.0613 1.1196 8 7 0.2211 -2.3915 1.3927 9 6 -0.2757 -3.7679 1.3232 10 6 -1.7705 -3.7728 1.5138 11 8 -2.3628 -2.7290 1.6899 12 7 -2.4494 -4.9368 1.4886 13 6 -3.8093 -4.9412 1.6615 14 1 -4.3369 -4.0117 1.8175 15 6 -4.5093 -6.1412 1.6350 16 7 -3.8677 -7.2719 1.4438 17 14 -6.3623 -6.1471 1.8713 18 1 -7.0300 -6.0151 0.5514 19 1 -6.7758 -7.4225 2.5099 20 1 -6.7541 -5.0085 2.7403 21 7 3.5091 -0.7208 1.2495 22 6 4.0359 -1.3874 2.4491 23 6 5.5650 -1.3118 2.4385 24 1 5.8781 -0.2690 2.4903 25 6 6.1226 -2.0731 3.6428 26 8 6.0580 -1.9000 1.2317 27 6 5.5655 -1.2747 0.0435 28 1 5.8786 -0.2309 0.0248 29 6 6.1244 -1.9978 -1.1835 30 6 4.0363 -1.3501 0.0299 31 1 -0.3632 0.5659 0.8578 32 1 -0.3633 0.4601 -0.9189 33 1 -0.3634 -1.0257 0.0611 34 1 1.8933 -0.5138 -0.8901 35 1 3.1260 1.4439 -0.0942 36 1 1.6019 1.9828 -0.8391 37 1 1.7557 1.9284 0.9334 38 1 -0.3982 -1.6591 1.5380 39 1 -0.0318 -4.1936 0.3499 40 1 0.1921 -4.3630 2.1076 41 1 -1.9758 -5.7715 1.3474 42 1 -4.3562 -8.1097 1.4256 43 1 3.6530 -0.8895 3.3400 44 1 3.7231 -2.4316 2.4523 45 1 5.8104 -3.1160 3.5896 46 1 7.2112 -2.0192 3.6344 47 1 5.7434 -1.6268 4.5621 48 1 5.8096 -3.0412 -1.1652 49 1 5.7483 -1.5211 -2.0888 50 1 7.2130 -1.9465 -1.1709 51 1 3.7237 -2.3936 -0.0056 52 1 3.6538 -0.8248 -0.8453 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344176467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:00 Heat of formation + Delta-G solvation = -110.858214 kcal Electronic energy + Delta-G solvation = -31793.634547 eV Core-core repulsion = 27600.439204 eV Total energy + Delta-G solvation = -4193.195342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.01663 -39.17196 -38.21855 -36.53342 -35.03059 -34.10743 -33.81880 -33.25256 -31.43226 -30.39111 -28.72443 -27.22570 -26.84516 -26.66502 -24.57090 -23.29461 -22.17904 -20.81085 -20.55360 -20.08747 -19.39761 -18.13547 -17.39544 -16.69327 -16.55595 -15.79930 -15.63268 -15.54219 -15.30074 -14.87625 -14.80899 -14.33229 -14.24830 -14.09389 -13.92907 -13.52886 -13.32622 -12.96627 -12.78685 -12.63270 -12.46736 -12.32498 -12.23250 -12.16402 -12.12790 -12.01771 -11.78971 -11.67272 -11.51615 -11.17326 -11.12987 -10.99529 -10.90410 -10.70398 -10.49581 -10.46275 -10.36641 -10.21970 -9.68091 -9.57227 -8.78299 -8.69121 -8.19006 -8.14970 -6.55820 -3.98069 2.63883 3.08254 3.18710 3.22677 3.32290 3.52905 3.65021 3.68459 4.07379 4.49606 4.71437 4.74653 4.81345 4.83396 4.87471 4.94052 5.06161 5.10149 5.12464 5.15230 5.27192 5.29847 5.36383 5.40857 5.47221 5.51169 5.60279 5.67717 5.69851 5.79838 5.80101 5.83034 5.87040 5.91000 5.94530 5.99673 6.00798 6.02554 6.05738 6.16743 6.22422 6.29874 6.63095 6.73810 6.81603 7.20047 7.41761 7.69171 7.87083 8.32611 8.40428 8.99939 9.34180 9.81681 10.60976 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.002494 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.559621 B =11224.520575 C =11939.841416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.084 4.084 3 C -0.133 4.133 4 C 0.071 3.929 5 H 0.108 0.892 6 C 0.483 3.517 7 O -0.543 6.543 8 N -0.704 5.704 9 C 0.104 3.896 10 C 0.427 3.573 11 O -0.597 6.597 12 N -0.548 5.548 13 C -0.306 4.306 14 H 0.106 0.894 15 C 0.026 3.974 16 N -0.894 5.894 17 Si 0.933 3.067 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.268 1.268 21 N -0.505 5.505 22 C 0.006 3.994 23 C 0.097 3.903 24 H 0.060 0.940 25 C -0.144 4.144 26 O -0.379 6.379 27 C 0.095 3.905 28 H 0.059 0.941 29 C -0.144 4.144 30 C -0.002 4.002 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.414 0.586 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.275 0.725 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.086 0.914 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.614 13.437 -1.841 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.103 4.103 3 C -0.191 4.191 4 C -0.041 4.041 5 H 0.125 0.875 6 C 0.268 3.732 7 O -0.422 6.422 8 N -0.361 5.361 9 C -0.024 4.024 10 C 0.212 3.788 11 O -0.484 6.484 12 N -0.182 5.182 13 C -0.435 4.435 14 H 0.124 0.876 15 C -0.177 4.177 16 N -0.534 5.534 17 Si 0.760 3.240 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.193 1.193 21 N -0.227 5.227 22 C -0.122 4.122 23 C 0.039 3.961 24 H 0.078 0.922 25 C -0.202 4.202 26 O -0.298 6.298 27 C 0.037 3.963 28 H 0.077 0.923 29 C -0.201 4.201 30 C -0.130 4.130 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.257 0.743 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.229 0.771 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.104 0.896 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.955 13.596 -1.806 22.594 hybrid contribution -1.540 -0.994 0.136 1.838 sum 16.415 12.602 -1.669 20.762 Atomic orbital electron populations 1.22329 0.94038 1.04154 1.02788 1.21104 0.96174 0.97031 0.95973 1.21690 1.01655 0.94182 1.01546 1.21992 0.88897 0.91778 1.01456 0.87462 1.21917 0.82303 0.92496 0.76462 1.90602 1.54746 1.46707 1.50142 1.46416 1.08291 1.09889 1.71519 1.20984 0.94228 0.84231 1.02965 1.19722 0.87957 0.85210 0.85875 1.90496 1.69620 1.31625 1.56686 1.41799 1.08218 1.07065 1.61133 1.19729 0.81856 0.95066 1.46852 0.87646 1.25332 1.00978 0.94619 0.96751 1.69610 1.37115 0.98207 1.48475 0.85813 0.81683 0.77856 0.78688 1.20226 1.20761 1.19290 1.62682 1.04319 1.52797 1.02879 1.23048 0.95739 1.00536 0.92902 1.22027 0.91927 0.96780 0.85412 0.92166 1.21737 1.01493 1.01272 0.95674 1.87977 1.69710 1.58811 1.13351 1.22058 0.92267 0.96305 0.85645 0.92341 1.21731 1.01422 1.01506 0.95479 1.23222 0.95216 1.01774 0.92766 0.91942 0.91769 0.90338 0.90666 0.91750 0.92906 0.92588 0.74328 0.89955 0.89951 0.77064 0.91539 0.90438 0.90752 0.91686 0.91774 0.91087 0.91669 0.91129 0.91834 0.89619 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.14 37.16 0.30 -1.65 16 2 C -0.08 -0.87 2.04 -90.62 -0.19 -1.06 16 3 C -0.13 -1.16 8.96 37.16 0.33 -0.83 16 4 C 0.07 0.84 1.88 -68.87 -0.13 0.71 16 5 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 6 C 0.48 7.23 6.30 -10.98 -0.07 7.16 16 7 O -0.54 -9.49 11.62 5.56 0.06 -9.43 16 8 N -0.70 -11.27 4.10 -61.47 -0.25 -11.52 16 9 C 0.10 1.88 6.16 -5.20 -0.03 1.85 16 10 C 0.43 9.59 7.85 -10.99 -0.09 9.50 16 11 O -0.60 -14.87 15.24 5.54 0.08 -14.79 16 12 N -0.55 -13.40 5.29 -10.97 -0.06 -13.46 16 13 C -0.31 -8.20 9.68 -14.94 -0.14 -8.35 16 14 H 0.11 2.94 7.16 -52.48 -0.38 2.57 16 15 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 16 N -0.89 -23.69 13.05 55.50 0.72 -22.97 16 17 Si 0.93 20.34 29.55 -169.99 -5.02 15.31 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 21 N -0.50 -5.86 4.08 -227.72 -0.93 -6.79 16 22 C 0.01 0.07 4.56 -3.71 -0.02 0.05 16 23 C 0.10 1.07 3.43 -26.68 -0.09 0.98 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 C -0.14 -1.35 9.57 37.16 0.36 -1.00 16 26 O -0.38 -4.88 10.11 -35.23 -0.36 -5.23 16 27 C 0.10 1.05 3.42 -26.68 -0.09 0.96 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 C -0.14 -1.35 9.57 37.16 0.36 -0.99 16 30 C 0.00 -0.03 4.20 -3.71 -0.02 -0.04 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.07 4.83 -51.93 -0.25 0.82 16 34 H 0.08 0.83 6.31 -51.93 -0.33 0.50 16 35 H 0.06 0.57 7.77 -51.93 -0.40 0.17 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.41 6.59 5.03 -40.82 -0.21 6.38 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 41 H 0.40 9.36 7.90 -40.82 -0.32 9.04 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.12 5.76 -51.93 -0.30 0.82 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 51 H 0.09 1.30 5.40 -51.93 -0.28 1.02 16 52 H 0.08 0.87 6.13 -51.93 -0.32 0.55 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -30.09 400.49 -8.00 -38.09 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -8.68 Total: 16.88 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 0.39 Total: 7.88 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.52 Total: -54.74 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.21 Total: -29.45 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.09 -8.00 -38.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344176467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.767 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds