Wall clock time and date at job start Wed Apr 1 2020 01:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47372 * 2 1 4 4 C 1.53000 * 109.47417 * 120.00408 * 2 1 3 5 5 H 1.08999 * 109.46802 * 300.01090 * 4 2 1 6 6 C 1.50701 * 109.46935 * 60.00255 * 4 2 1 7 7 O 1.21278 * 120.00174 * 112.92939 * 6 4 2 8 8 N 1.34786 * 120.00132 * 292.92875 * 6 4 2 9 9 C 1.46496 * 120.00134 * 176.83696 * 8 6 4 10 10 C 1.50697 * 109.47263 * 179.97438 * 9 8 6 11 11 O 1.21296 * 119.99970 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00194 * 180.02562 * 10 9 8 13 13 C 1.37094 * 120.00375 * 180.02562 * 12 10 9 14 14 H 1.08006 * 120.00041 * 0.02562 * 13 12 10 15 15 C 1.38945 * 120.00468 * 179.97438 * 13 12 10 16 16 N 1.31408 * 119.99914 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00140 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47244 * 90.00149 * 17 15 13 19 19 H 1.48504 * 109.47270 * 209.99761 * 17 15 13 20 20 H 1.48495 * 109.47206 * 330.00138 * 17 15 13 21 21 N 1.46896 * 109.47388 * 180.02562 * 4 2 1 22 22 C 1.47008 * 111.00024 * 179.05614 * 21 4 2 23 23 C 1.53100 * 109.26055 * 182.39206 * 22 21 4 24 24 H 1.09000 * 109.50471 * 63.12791 * 23 22 21 25 25 C 1.52999 * 109.50788 * 183.21824 * 23 22 21 26 26 O 1.43020 * 109.25590 * 303.15156 * 23 22 21 27 27 C 1.43016 * 113.73886 * 58.67061 * 26 23 22 28 28 H 1.08998 * 109.50983 * 61.26248 * 27 26 23 29 29 C 1.52996 * 109.50563 * 181.35327 * 27 26 23 30 30 C 1.47014 * 110.99703 * 302.68911 * 21 4 2 31 31 H 1.08998 * 109.46635 * 303.41063 * 1 2 3 32 32 H 1.08998 * 109.46756 * 63.40582 * 1 2 3 33 33 H 1.08993 * 109.47478 * 183.41050 * 1 2 3 34 34 H 1.09002 * 109.46607 * 240.00308 * 2 1 3 35 35 H 1.08996 * 109.47244 * 185.25879 * 3 2 1 36 36 H 1.08994 * 109.47262 * 305.26078 * 3 2 1 37 37 H 1.09004 * 109.46954 * 65.25760 * 3 2 1 38 38 H 0.97002 * 119.99422 * 357.11982 * 8 6 4 39 39 H 1.08997 * 109.47479 * 300.00328 * 9 8 6 40 40 H 1.09004 * 109.46687 * 60.00405 * 9 8 6 41 41 H 0.97003 * 120.00114 * 359.97438 * 12 10 9 42 42 H 0.96999 * 120.00448 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.50803 * 302.32724 * 22 21 4 44 44 H 1.09005 * 109.50624 * 62.45582 * 22 21 4 45 45 H 1.08994 * 109.47280 * 59.99847 * 25 23 22 46 46 H 1.09002 * 109.46802 * 179.97438 * 25 23 22 47 47 H 1.08995 * 109.46828 * 299.99884 * 25 23 22 48 48 H 1.09003 * 109.47524 * 59.99727 * 29 27 26 49 49 H 1.09006 * 109.47034 * 179.97438 * 29 27 26 50 50 H 1.08995 * 109.47234 * 299.99564 * 29 27 26 51 51 H 1.08995 * 109.51022 * 297.54049 * 30 21 4 52 52 H 1.09001 * 109.50702 * 57.67459 * 30 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6766 -0.2076 2.1392 6 6 1.5378 -2.1422 1.2490 7 8 2.3184 -3.0613 1.1196 8 7 0.2211 -2.3915 1.3927 9 6 -0.2757 -3.7679 1.3232 10 6 -1.7705 -3.7728 1.5138 11 8 -2.3628 -2.7290 1.6899 12 7 -2.4494 -4.9368 1.4886 13 6 -3.8093 -4.9412 1.6615 14 1 -4.3369 -4.0117 1.8175 15 6 -4.5093 -6.1412 1.6350 16 7 -3.8677 -7.2719 1.4438 17 14 -6.3623 -6.1471 1.8713 18 1 -7.0300 -6.0151 0.5514 19 1 -6.7758 -7.4225 2.5099 20 1 -6.7541 -5.0085 2.7403 21 7 3.5091 -0.7208 1.2495 22 6 4.0359 -1.3874 2.4491 23 6 5.5650 -1.3118 2.4385 24 1 5.8781 -0.2690 2.4903 25 6 6.1226 -2.0731 3.6428 26 8 6.0580 -1.9000 1.2317 27 6 5.5655 -1.2747 0.0435 28 1 5.8786 -0.2309 0.0248 29 6 6.1244 -1.9978 -1.1835 30 6 4.0363 -1.3501 0.0299 31 1 -0.3632 0.5659 0.8578 32 1 -0.3633 0.4601 -0.9189 33 1 -0.3634 -1.0257 0.0611 34 1 1.8933 -0.5138 -0.8901 35 1 3.1260 1.4439 -0.0942 36 1 1.6019 1.9828 -0.8391 37 1 1.7557 1.9284 0.9334 38 1 -0.3982 -1.6591 1.5380 39 1 -0.0318 -4.1936 0.3499 40 1 0.1921 -4.3630 2.1076 41 1 -1.9758 -5.7715 1.3474 42 1 -4.3562 -8.1097 1.4256 43 1 3.6530 -0.8895 3.3400 44 1 3.7231 -2.4316 2.4523 45 1 5.8104 -3.1160 3.5896 46 1 7.2112 -2.0192 3.6344 47 1 5.7434 -1.6268 4.5621 48 1 5.8096 -3.0412 -1.1652 49 1 5.7483 -1.5211 -2.0888 50 1 7.2130 -1.9465 -1.1709 51 1 3.7237 -2.3936 -0.0056 52 1 3.6538 -0.8248 -0.8453 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344176467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:59 Heat of formation + Delta-G solvation = -132.094553 kcal Electronic energy + Delta-G solvation = -31794.555423 eV Core-core repulsion = 27600.439204 eV Total energy + Delta-G solvation = -4194.116219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.11409 -40.49901 -39.74305 -37.56638 -36.45772 -35.78452 -34.72390 -34.34909 -33.40051 -31.24588 -30.02793 -28.18921 -27.93955 -27.60442 -26.33111 -24.28517 -23.02959 -21.94533 -21.49835 -21.45799 -20.85041 -20.03884 -18.66144 -17.65452 -17.59261 -17.33640 -16.91298 -16.83002 -16.48145 -16.40821 -15.88501 -15.74046 -15.63566 -15.45900 -15.10117 -14.65770 -14.35223 -14.01428 -13.87566 -13.78426 -13.57195 -13.55875 -13.43161 -13.23394 -12.99463 -12.95247 -12.92466 -12.85483 -12.67494 -12.48274 -12.39976 -12.14677 -12.04152 -11.89560 -11.83159 -11.59362 -11.57275 -11.37169 -11.29963 -10.59550 -10.48070 -10.16251 -10.07957 -9.26234 -8.53672 -6.04131 1.33960 1.41100 1.44346 1.53693 1.87210 1.99041 2.29579 2.61862 2.78798 3.07908 3.13389 3.56868 3.67812 3.85621 3.91092 3.99347 4.11422 4.15515 4.21815 4.24637 4.28387 4.34570 4.36365 4.41039 4.44034 4.52212 4.60787 4.66965 4.70967 4.81015 4.84057 4.86639 4.97935 5.00778 5.05629 5.13017 5.14256 5.21391 5.23918 5.27579 5.34298 5.37190 5.38917 5.52950 5.76535 5.84974 5.88725 6.34139 6.40545 6.47054 7.00390 7.08768 7.40671 7.90253 8.63229 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.002494 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.559621 B =11224.520575 C =11939.841416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.076 4.076 3 C -0.126 4.126 4 C 0.076 3.924 5 H 0.123 0.877 6 C 0.483 3.517 7 O -0.568 6.568 8 N -0.704 5.704 9 C 0.117 3.883 10 C 0.433 3.567 11 O -0.621 6.621 12 N -0.559 5.559 13 C -0.336 4.336 14 H 0.088 0.912 15 C -0.011 4.011 16 N -0.917 5.917 17 Si 0.997 3.003 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.269 1.269 21 N -0.492 5.492 22 C 0.006 3.994 23 C 0.094 3.906 24 H 0.075 0.925 25 C -0.141 4.141 26 O -0.401 6.401 27 C 0.092 3.908 28 H 0.073 0.927 29 C -0.141 4.141 30 C 0.002 3.998 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.417 0.583 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.397 0.603 42 H 0.280 0.720 43 H 0.093 0.907 44 H 0.041 0.959 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.046 0.954 49 H 0.090 0.910 50 H 0.071 0.929 51 H 0.052 0.948 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.134 15.236 -1.900 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.095 4.095 3 C -0.183 4.183 4 C -0.037 4.037 5 H 0.140 0.860 6 C 0.270 3.730 7 O -0.448 6.448 8 N -0.362 5.362 9 C -0.011 4.011 10 C 0.220 3.780 11 O -0.508 6.508 12 N -0.194 5.194 13 C -0.466 4.466 14 H 0.106 0.894 15 C -0.211 4.211 16 N -0.557 5.557 17 Si 0.820 3.180 18 H -0.195 1.195 19 H -0.197 1.197 20 H -0.193 1.193 21 N -0.214 5.214 22 C -0.122 4.122 23 C 0.037 3.963 24 H 0.093 0.907 25 C -0.198 4.198 26 O -0.321 6.321 27 C 0.035 3.965 28 H 0.091 0.909 29 C -0.198 4.198 30 C -0.126 4.126 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.259 0.741 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.231 0.769 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.108 0.892 48 H 0.065 0.935 49 H 0.108 0.892 50 H 0.090 0.910 51 H 0.070 0.930 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.501 15.402 -1.869 24.146 hybrid contribution -1.639 -1.528 0.145 2.246 sum 16.862 13.875 -1.724 21.904 Atomic orbital electron populations 1.22288 0.94512 1.02556 1.03707 1.21069 0.95604 0.98083 0.94790 1.21637 1.01659 0.92614 1.02424 1.22144 0.89011 0.89593 1.02927 0.85980 1.22601 0.81386 0.93737 0.75276 1.90620 1.55191 1.47962 1.51066 1.46469 1.08871 1.08803 1.72009 1.20760 0.90887 0.85946 1.03501 1.20363 0.89548 0.84240 0.83860 1.90472 1.70827 1.32369 1.57178 1.41855 1.07838 1.07716 1.62035 1.19743 0.83066 0.94928 1.48833 0.89444 1.26140 1.05184 0.93939 0.95877 1.69679 1.38723 0.98668 1.48628 0.84870 0.76349 0.78021 0.78779 1.19493 1.19696 1.19345 1.62769 1.03941 1.51961 1.02718 1.23057 0.96760 0.98724 0.93654 1.22172 0.91092 0.97688 0.85382 0.90711 1.21747 1.02034 1.00132 0.95923 1.87965 1.70047 1.59743 1.14327 1.22209 0.91460 0.97179 0.85673 0.90883 1.21744 1.01965 1.00423 0.95692 1.23172 0.96165 0.99870 0.93398 0.91106 0.90810 0.93044 0.91305 0.91633 0.91785 0.91937 0.74099 0.89215 0.89418 0.76855 0.91061 0.88908 0.94067 0.93474 0.90929 0.89159 0.93466 0.89159 0.90983 0.92995 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 8.14 71.98 0.59 -3.04 16 2 C -0.08 -1.46 2.04 -10.79 -0.02 -1.48 16 3 C -0.13 -1.84 8.96 71.98 0.64 -1.19 16 4 C 0.08 1.69 1.88 44.17 0.08 1.77 16 5 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 6 C 0.48 14.44 6.30 87.66 0.55 14.99 16 7 O -0.57 -20.28 11.62 -3.02 -0.04 -20.32 16 8 N -0.70 -22.61 4.10 -466.79 -1.91 -24.52 16 9 C 0.12 4.30 6.16 85.63 0.53 4.82 16 10 C 0.43 19.81 7.85 87.66 0.69 20.50 16 11 O -0.62 -31.39 15.24 -3.08 -0.05 -31.44 16 12 N -0.56 -28.00 5.29 -306.99 -1.62 -29.62 16 13 C -0.34 -18.41 9.68 84.04 0.81 -17.60 16 14 H 0.09 5.02 7.16 -2.91 -0.02 4.99 16 15 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 16 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 17 Si 1.00 41.49 29.55 68.60 2.03 43.52 16 18 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 21 N -0.49 -10.77 4.08 -874.36 -3.57 -14.34 16 22 C 0.01 0.14 4.56 86.32 0.39 0.54 16 23 C 0.09 1.97 3.43 30.63 0.10 2.08 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 C -0.14 -2.50 9.57 71.98 0.69 -1.81 16 26 O -0.40 -10.04 10.11 -148.98 -1.51 -11.55 16 27 C 0.09 1.93 3.42 30.63 0.10 2.04 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 C -0.14 -2.49 9.57 71.98 0.69 -1.80 16 30 C 0.00 0.04 4.20 86.32 0.36 0.40 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.38 4.83 -2.39 -0.01 1.37 16 34 H 0.07 1.42 6.31 -2.39 -0.02 1.40 16 35 H 0.06 0.96 7.77 -2.39 -0.02 0.95 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.42 13.23 5.03 -92.71 -0.47 12.76 16 39 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 41 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 42 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.04 1.26 5.76 -2.38 -0.01 1.25 16 45 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 50 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.05 1.60 5.40 -2.39 -0.01 1.59 16 52 H 0.09 1.88 6.13 -2.39 -0.01 1.87 16 Total: -1.00 -65.38 400.49 0.03 -65.35 By element: Atomic # 1 Polarization: 51.50 SS G_CDS: -0.27 Total: 51.23 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 6.68 Total: 20.12 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -6.82 Total: -116.91 kcal Atomic # 8 Polarization: -61.72 SS G_CDS: -1.59 Total: -63.31 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -65.38 0.03 -65.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344176467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.744 kcal (2) G-P(sol) polarization free energy of solvation -65.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds