Wall clock time and date at job start Wed Apr 1 2020 01:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47007 * 2 1 4 4 C 1.53001 * 109.47032 * 119.99876 * 2 1 3 5 5 H 1.08995 * 109.47193 * 59.55305 * 4 2 1 6 6 C 1.50701 * 109.47054 * 299.54844 * 4 2 1 7 7 O 1.21278 * 120.00479 * 268.58189 * 6 4 2 8 8 N 1.34783 * 119.99879 * 88.58333 * 6 4 2 9 9 C 1.46495 * 120.00260 * 175.01866 * 8 6 4 10 10 C 1.50697 * 109.47326 * 180.02562 * 9 8 6 11 11 O 1.21299 * 119.99992 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00099 * 179.97438 * 10 9 8 13 13 C 1.37106 * 120.00145 * 179.97438 * 12 10 9 14 14 H 1.07998 * 119.99370 * 359.97438 * 13 12 10 15 15 C 1.38942 * 120.00230 * 179.97438 * 13 12 10 16 16 N 1.31411 * 119.99992 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00210 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47245 * 90.00048 * 17 15 13 19 19 H 1.48505 * 109.47491 * 210.00241 * 17 15 13 20 20 H 1.48502 * 109.47016 * 330.00218 * 17 15 13 21 21 N 1.46899 * 109.46961 * 179.55427 * 4 2 1 22 22 C 1.47013 * 111.00185 * 178.72119 * 21 4 2 23 23 C 1.53098 * 109.25934 * 182.39066 * 22 21 4 24 24 H 1.09000 * 109.50552 * 63.08538 * 23 22 21 25 25 C 1.53003 * 109.50554 * 183.21408 * 23 22 21 26 26 O 1.43010 * 109.25763 * 303.14888 * 23 22 21 27 27 C 1.43013 * 113.73809 * 58.67233 * 26 23 22 28 28 H 1.08997 * 109.50624 * 181.34956 * 27 26 23 29 29 C 1.52999 * 109.50860 * 61.26552 * 27 26 23 30 30 C 1.47022 * 110.99932 * 302.35532 * 21 4 2 31 31 H 1.09001 * 109.47252 * 63.72270 * 1 2 3 32 32 H 1.09001 * 109.47222 * 183.71798 * 1 2 3 33 33 H 1.09001 * 109.47591 * 303.71945 * 1 2 3 34 34 H 1.08996 * 109.47293 * 240.00185 * 2 1 3 35 35 H 1.08998 * 109.46878 * 182.75995 * 3 2 1 36 36 H 1.08997 * 109.46682 * 302.75551 * 3 2 1 37 37 H 1.08995 * 109.47217 * 62.75114 * 3 2 1 38 38 H 0.97005 * 119.99235 * 355.01241 * 8 6 4 39 39 H 1.09003 * 109.46990 * 300.00014 * 9 8 6 40 40 H 1.09001 * 109.47132 * 59.99661 * 9 8 6 41 41 H 0.96995 * 119.99996 * 359.97438 * 12 10 9 42 42 H 0.97005 * 120.00188 * 180.02562 * 16 15 13 43 43 H 1.08999 * 109.50841 * 62.45535 * 22 21 4 44 44 H 1.09007 * 109.50482 * 302.32442 * 22 21 4 45 45 H 1.08996 * 109.47137 * 179.78499 * 25 23 22 46 46 H 1.09004 * 109.47228 * 299.78628 * 25 23 22 47 47 H 1.09001 * 109.46995 * 59.78229 * 25 23 22 48 48 H 1.08999 * 109.47338 * 59.99382 * 29 27 26 49 49 H 1.08998 * 109.47359 * 180.02562 * 29 27 26 50 50 H 1.09002 * 109.46846 * 300.00202 * 29 27 26 51 51 H 1.08998 * 109.50289 * 57.67180 * 30 21 4 52 52 H 1.09005 * 109.50084 * 297.54291 * 30 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6701 -1.7465 1.2533 6 6 1.5467 -0.0043 2.4797 7 8 2.2216 0.8674 2.9851 8 7 0.3556 -0.3320 3.0185 9 6 -0.0751 0.2863 4.2748 10 6 -1.4313 -0.2472 4.6583 11 8 -1.9840 -1.0635 3.9515 12 7 -2.0301 0.1825 5.7867 13 6 -3.2641 -0.3026 6.1353 14 1 -3.7565 -1.0287 5.5055 15 6 -3.8812 0.1400 7.2989 16 7 -3.2823 1.0239 8.0649 17 14 -5.5628 -0.5204 7.7735 18 1 -5.3990 -1.7317 8.6168 19 1 -6.3049 0.5163 8.5352 20 1 -6.3216 -0.8707 6.5460 21 7 3.5089 -0.7306 1.2439 22 6 4.0360 -1.3903 2.4473 23 6 5.5655 -1.3250 2.4300 24 1 5.8858 -0.2839 2.4707 25 6 6.1227 -2.0796 3.6388 26 8 6.0497 -1.9270 1.2265 27 6 5.5568 -1.3088 0.0349 28 1 5.9481 -1.8342 -0.8363 29 6 6.0061 0.1531 -0.0058 30 6 4.0272 -1.3739 0.0278 31 1 -0.3634 0.4550 -0.9215 32 1 -0.3634 -1.0255 0.0666 33 1 -0.3634 0.5705 0.8548 34 1 1.8933 -0.5138 -0.8900 35 1 3.1288 1.4429 -0.0495 36 1 1.6368 1.9704 -0.8643 37 1 1.7175 1.9420 0.9136 38 1 -0.2165 -0.9773 2.5744 39 1 0.6429 0.0511 5.0604 40 1 -0.1324 1.3673 4.1467 41 1 -1.5880 0.8349 6.3521 42 1 -3.7129 1.3326 8.8775 43 1 3.7163 -2.4323 2.4607 44 1 3.6600 -0.8820 3.3353 45 1 7.2117 -2.0360 3.6239 46 1 5.7532 -1.6203 4.5557 47 1 5.8001 -3.1199 3.5980 48 1 7.0951 0.1990 0.0032 49 1 5.6297 0.6238 -0.9140 50 1 5.6133 0.6783 0.8648 51 1 3.6447 -0.8537 -0.8504 52 1 3.7073 -2.4157 0.0026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344176469.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:03 Heat of formation + Delta-G solvation = -119.427841 kcal Electronic energy + Delta-G solvation = -31790.700619 eV Core-core repulsion = 27597.133669 eV Total energy + Delta-G solvation = -4193.566949 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85178 -39.43532 -38.25089 -36.55369 -34.58974 -34.16322 -33.60009 -33.50671 -31.41487 -30.46106 -28.53469 -27.20662 -27.06188 -26.71707 -24.61741 -23.49343 -22.86905 -21.13854 -19.82825 -19.65277 -19.22163 -18.09946 -17.15153 -16.92789 -16.54449 -16.07146 -15.60945 -15.37402 -15.19840 -14.90221 -14.79417 -14.48947 -14.35726 -14.12022 -13.92752 -13.69665 -13.22113 -13.20088 -12.95901 -12.65893 -12.47157 -12.35087 -12.26764 -12.15320 -12.03768 -11.95468 -11.71027 -11.66030 -11.61328 -11.30225 -11.15156 -11.11535 -11.00273 -10.90703 -10.48511 -10.40549 -10.34628 -9.74598 -9.66621 -9.48951 -8.78561 -8.66832 -8.49784 -8.13332 -6.54466 -3.96636 2.74917 3.09311 3.11146 3.20259 3.25808 3.53673 3.68365 3.70728 4.08598 4.50576 4.57828 4.66646 4.75006 4.83161 4.85806 4.88963 4.91942 5.02916 5.12941 5.14083 5.15971 5.22470 5.24877 5.36401 5.39727 5.48375 5.54092 5.59249 5.65178 5.75097 5.77765 5.83306 5.86022 5.88944 5.91823 5.93718 5.96961 6.00269 6.03639 6.17161 6.23942 6.41485 6.64229 6.69102 6.75214 7.05761 7.43091 7.79612 7.88869 8.40437 8.45282 9.01543 9.35960 9.83682 10.62376 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.002467 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.816180 B =11348.552873 C =12190.627677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.082 4.082 3 C -0.141 4.141 4 C 0.073 3.927 5 H 0.060 0.940 6 C 0.521 3.479 7 O -0.527 6.527 8 N -0.709 5.709 9 C 0.110 3.890 10 C 0.428 3.572 11 O -0.597 6.597 12 N -0.549 5.549 13 C -0.305 4.305 14 H 0.105 0.895 15 C 0.026 3.974 16 N -0.894 5.894 17 Si 0.933 3.067 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.269 1.269 21 N -0.506 5.506 22 C 0.020 3.980 23 C 0.091 3.909 24 H 0.072 0.928 25 C -0.145 4.145 26 O -0.380 6.380 27 C 0.093 3.907 28 H 0.103 0.897 29 C -0.177 4.177 30 C 0.020 3.980 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.410 0.590 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.039 0.961 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.063 0.937 50 H 0.076 0.924 51 H 0.091 0.909 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.576 -2.482 -15.166 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.101 4.101 3 C -0.198 4.198 4 C -0.039 4.039 5 H 0.077 0.923 6 C 0.305 3.695 7 O -0.402 6.402 8 N -0.365 5.365 9 C -0.018 4.018 10 C 0.213 3.787 11 O -0.484 6.484 12 N -0.183 5.183 13 C -0.435 4.435 14 H 0.123 0.877 15 C -0.177 4.177 16 N -0.534 5.534 17 Si 0.759 3.241 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.193 1.193 21 N -0.231 5.231 22 C -0.108 4.108 23 C 0.033 3.967 24 H 0.090 0.910 25 C -0.202 4.202 26 O -0.299 6.299 27 C 0.035 3.965 28 H 0.121 0.879 29 C -0.234 4.234 30 C -0.108 4.108 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.248 0.752 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.229 0.771 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.109 0.891 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 16.896 -1.972 -15.031 22.701 hybrid contribution -1.463 -0.843 0.514 1.765 sum 15.433 -2.815 -14.517 21.374 Atomic orbital electron populations 1.22006 0.94169 1.02514 1.03027 1.21113 0.96005 0.97667 0.95342 1.21772 1.02002 0.94274 1.01771 1.21717 0.88716 0.98614 0.94845 0.92255 1.20152 0.81057 0.83599 0.84668 1.90681 1.56376 1.30795 1.62388 1.45849 1.19757 1.46080 1.24769 1.20933 0.95842 0.98422 0.86591 1.19739 0.87670 0.86914 0.84354 1.90498 1.66659 1.37642 1.53615 1.41800 1.17891 1.38560 1.20074 1.19723 0.93693 1.23341 1.06700 0.87688 1.25324 1.00196 0.96313 0.95859 1.69614 1.39269 1.30097 1.14467 0.85817 0.81088 0.78352 0.78801 1.20251 1.20767 1.19312 1.61926 1.05541 1.53689 1.01915 1.22926 0.96107 0.97366 0.94421 1.22115 0.91650 0.97737 0.85193 0.90983 1.21750 1.01661 1.00874 0.95938 1.88018 1.70584 1.57747 1.13566 1.22210 0.91757 0.94411 0.88130 0.87927 1.22301 1.01086 0.96381 1.03648 1.22906 0.96171 0.97755 0.93996 0.91854 0.92252 0.91633 0.90281 0.91457 0.93350 0.91960 0.75224 0.90051 0.89839 0.77052 0.91560 0.94236 0.88740 0.91628 0.90766 0.91985 0.92533 0.91791 0.90539 0.89060 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.37 37.16 0.31 -1.40 16 2 C -0.08 -0.85 2.32 -90.62 -0.21 -1.06 16 3 C -0.14 -1.57 8.72 37.16 0.32 -1.25 16 4 C 0.07 0.87 1.69 -68.86 -0.12 0.75 16 5 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 6 C 0.52 7.81 4.24 -10.98 -0.05 7.76 16 7 O -0.53 -9.24 14.58 5.56 0.08 -9.15 16 8 N -0.71 -11.38 4.59 -61.47 -0.28 -11.66 16 9 C 0.11 1.97 6.16 -5.20 -0.03 1.94 16 10 C 0.43 9.60 7.85 -10.99 -0.09 9.52 16 11 O -0.60 -14.98 15.24 5.54 0.08 -14.89 16 12 N -0.55 -13.41 5.29 -10.97 -0.06 -13.47 16 13 C -0.31 -8.20 9.68 -14.93 -0.14 -8.34 16 14 H 0.11 2.94 7.16 -52.49 -0.38 2.57 16 15 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 16 N -0.89 -23.68 13.05 55.50 0.72 -22.96 16 17 Si 0.93 20.37 29.55 -169.99 -5.02 15.34 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 N -0.51 -5.73 2.99 -227.71 -0.68 -6.41 16 22 C 0.02 0.24 4.58 -3.71 -0.02 0.22 16 23 C 0.09 0.99 3.03 -26.68 -0.08 0.91 16 24 H 0.07 0.82 6.49 -51.93 -0.34 0.48 16 25 C -0.14 -1.35 9.57 37.16 0.36 -1.00 16 26 O -0.38 -4.25 10.28 -35.23 -0.36 -4.61 16 27 C 0.09 0.84 3.92 -26.68 -0.10 0.73 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 29 C -0.18 -1.53 8.88 37.16 0.33 -1.20 16 30 C 0.02 0.18 4.70 -3.71 -0.02 0.16 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.85 6.70 -51.93 -0.35 0.50 16 34 H 0.08 0.68 6.29 -51.93 -0.33 0.35 16 35 H 0.07 0.75 7.70 -51.93 -0.40 0.35 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.86 6.52 -51.93 -0.34 0.52 16 38 H 0.41 6.59 6.95 -40.82 -0.28 6.31 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.40 9.32 7.90 -40.82 -0.32 9.00 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 1.31 6.26 -51.92 -0.33 0.99 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.08 0.81 6.13 -51.93 -0.32 0.49 16 51 H 0.09 0.72 6.12 -51.93 -0.32 0.40 16 52 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 402.63 15.07 6.07 6.07 Total: -1.00 -30.13 402.63 -7.83 -37.96 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -8.75 Total: 15.47 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 0.37 Total: 8.32 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.30 Total: -54.50 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.20 Total: -28.66 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.13 -7.83 -37.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344176469.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.472 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds