Wall clock time and date at job start Wed Apr 1 2020 01:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47007 * 2 1 4 4 C 1.53001 * 109.47032 * 119.99876 * 2 1 3 5 5 H 1.08995 * 109.47193 * 59.55305 * 4 2 1 6 6 C 1.50701 * 109.47054 * 299.54844 * 4 2 1 7 7 O 1.21278 * 120.00479 * 268.58189 * 6 4 2 8 8 N 1.34783 * 119.99879 * 88.58333 * 6 4 2 9 9 C 1.46495 * 120.00260 * 175.01866 * 8 6 4 10 10 C 1.50697 * 109.47326 * 180.02562 * 9 8 6 11 11 O 1.21299 * 119.99992 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00099 * 179.97438 * 10 9 8 13 13 C 1.37106 * 120.00145 * 179.97438 * 12 10 9 14 14 H 1.07998 * 119.99370 * 359.97438 * 13 12 10 15 15 C 1.38942 * 120.00230 * 179.97438 * 13 12 10 16 16 N 1.31411 * 119.99992 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00210 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47245 * 90.00048 * 17 15 13 19 19 H 1.48505 * 109.47491 * 210.00241 * 17 15 13 20 20 H 1.48502 * 109.47016 * 330.00218 * 17 15 13 21 21 N 1.46899 * 109.46961 * 179.55427 * 4 2 1 22 22 C 1.47013 * 111.00185 * 178.72119 * 21 4 2 23 23 C 1.53098 * 109.25934 * 182.39066 * 22 21 4 24 24 H 1.09000 * 109.50552 * 63.08538 * 23 22 21 25 25 C 1.53003 * 109.50554 * 183.21408 * 23 22 21 26 26 O 1.43010 * 109.25763 * 303.14888 * 23 22 21 27 27 C 1.43013 * 113.73809 * 58.67233 * 26 23 22 28 28 H 1.08997 * 109.50624 * 181.34956 * 27 26 23 29 29 C 1.52999 * 109.50860 * 61.26552 * 27 26 23 30 30 C 1.47022 * 110.99932 * 302.35532 * 21 4 2 31 31 H 1.09001 * 109.47252 * 63.72270 * 1 2 3 32 32 H 1.09001 * 109.47222 * 183.71798 * 1 2 3 33 33 H 1.09001 * 109.47591 * 303.71945 * 1 2 3 34 34 H 1.08996 * 109.47293 * 240.00185 * 2 1 3 35 35 H 1.08998 * 109.46878 * 182.75995 * 3 2 1 36 36 H 1.08997 * 109.46682 * 302.75551 * 3 2 1 37 37 H 1.08995 * 109.47217 * 62.75114 * 3 2 1 38 38 H 0.97005 * 119.99235 * 355.01241 * 8 6 4 39 39 H 1.09003 * 109.46990 * 300.00014 * 9 8 6 40 40 H 1.09001 * 109.47132 * 59.99661 * 9 8 6 41 41 H 0.96995 * 119.99996 * 359.97438 * 12 10 9 42 42 H 0.97005 * 120.00188 * 180.02562 * 16 15 13 43 43 H 1.08999 * 109.50841 * 62.45535 * 22 21 4 44 44 H 1.09007 * 109.50482 * 302.32442 * 22 21 4 45 45 H 1.08996 * 109.47137 * 179.78499 * 25 23 22 46 46 H 1.09004 * 109.47228 * 299.78628 * 25 23 22 47 47 H 1.09001 * 109.46995 * 59.78229 * 25 23 22 48 48 H 1.08999 * 109.47338 * 59.99382 * 29 27 26 49 49 H 1.08998 * 109.47359 * 180.02562 * 29 27 26 50 50 H 1.09002 * 109.46846 * 300.00202 * 29 27 26 51 51 H 1.08998 * 109.50289 * 57.67180 * 30 21 4 52 52 H 1.09005 * 109.50084 * 297.54291 * 30 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6701 -1.7465 1.2533 6 6 1.5467 -0.0043 2.4797 7 8 2.2216 0.8674 2.9851 8 7 0.3556 -0.3320 3.0185 9 6 -0.0751 0.2863 4.2748 10 6 -1.4313 -0.2472 4.6583 11 8 -1.9840 -1.0635 3.9515 12 7 -2.0301 0.1825 5.7867 13 6 -3.2641 -0.3026 6.1353 14 1 -3.7565 -1.0287 5.5055 15 6 -3.8812 0.1400 7.2989 16 7 -3.2823 1.0239 8.0649 17 14 -5.5628 -0.5204 7.7735 18 1 -5.3990 -1.7317 8.6168 19 1 -6.3049 0.5163 8.5352 20 1 -6.3216 -0.8707 6.5460 21 7 3.5089 -0.7306 1.2439 22 6 4.0360 -1.3903 2.4473 23 6 5.5655 -1.3250 2.4300 24 1 5.8858 -0.2839 2.4707 25 6 6.1227 -2.0796 3.6388 26 8 6.0497 -1.9270 1.2265 27 6 5.5568 -1.3088 0.0349 28 1 5.9481 -1.8342 -0.8363 29 6 6.0061 0.1531 -0.0058 30 6 4.0272 -1.3739 0.0278 31 1 -0.3634 0.4550 -0.9215 32 1 -0.3634 -1.0255 0.0666 33 1 -0.3634 0.5705 0.8548 34 1 1.8933 -0.5138 -0.8900 35 1 3.1288 1.4429 -0.0495 36 1 1.6368 1.9704 -0.8643 37 1 1.7175 1.9420 0.9136 38 1 -0.2165 -0.9773 2.5744 39 1 0.6429 0.0511 5.0604 40 1 -0.1324 1.3673 4.1467 41 1 -1.5880 0.8349 6.3521 42 1 -3.7129 1.3326 8.8775 43 1 3.7163 -2.4323 2.4607 44 1 3.6600 -0.8820 3.3353 45 1 7.2117 -2.0360 3.6239 46 1 5.7532 -1.6203 4.5557 47 1 5.8001 -3.1199 3.5980 48 1 7.0951 0.1990 0.0032 49 1 5.6297 0.6238 -0.9140 50 1 5.6133 0.6783 0.8648 51 1 3.6447 -0.8537 -0.8504 52 1 3.7073 -2.4157 0.0026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344176469.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:02 Heat of formation + Delta-G solvation = -140.520879 kcal Electronic energy + Delta-G solvation = -31791.615282 eV Core-core repulsion = 27597.133669 eV Total energy + Delta-G solvation = -4194.481612 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87110 -40.62484 -39.89440 -37.58211 -36.26799 -35.45079 -34.87007 -34.28771 -33.38946 -31.26943 -29.87636 -28.08617 -28.00992 -27.78696 -26.36492 -24.46000 -23.67566 -22.25507 -21.39885 -20.71202 -20.36020 -19.99179 -18.38907 -17.89067 -17.41876 -17.24297 -17.16555 -16.68949 -16.40634 -16.31000 -15.90536 -15.80471 -15.52635 -15.35087 -15.10753 -14.87983 -14.43280 -14.26303 -13.95110 -13.83526 -13.58293 -13.56040 -13.49152 -13.24835 -13.11488 -12.95697 -12.89068 -12.76055 -12.63058 -12.47351 -12.39299 -12.14147 -12.09313 -12.00415 -11.90174 -11.79135 -11.58468 -11.19236 -10.74042 -10.58119 -10.51568 -10.17367 -10.08299 -9.37663 -8.52618 -6.02924 1.34910 1.41607 1.53947 1.55869 1.88879 1.91948 2.28757 2.66956 2.82221 3.10137 3.14554 3.53329 3.77903 3.80510 3.87578 3.93098 4.08285 4.12456 4.15154 4.20786 4.25776 4.33381 4.38902 4.41322 4.44682 4.46060 4.56624 4.62932 4.70051 4.73493 4.79950 4.80911 4.97343 4.99001 5.04463 5.06820 5.13066 5.15806 5.21312 5.26000 5.36494 5.37441 5.45177 5.52343 5.76136 5.90284 5.91694 6.27062 6.44689 6.53457 7.01844 7.18350 7.42560 7.92379 8.64314 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.002467 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.816180 B =11348.552873 C =12190.627677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.076 4.076 3 C -0.135 4.135 4 C 0.077 3.923 5 H 0.068 0.932 6 C 0.523 3.477 7 O -0.553 6.553 8 N -0.710 5.710 9 C 0.123 3.877 10 C 0.433 3.567 11 O -0.623 6.623 12 N -0.560 5.560 13 C -0.336 4.336 14 H 0.086 0.914 15 C -0.010 4.010 16 N -0.916 5.916 17 Si 0.996 3.004 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.270 1.270 21 N -0.511 5.511 22 C 0.023 3.977 23 C 0.095 3.905 24 H 0.064 0.936 25 C -0.142 4.142 26 O -0.391 6.391 27 C 0.087 3.913 28 H 0.126 0.874 29 C -0.170 4.170 30 C 0.020 3.980 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.029 0.971 38 H 0.411 0.589 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.398 0.602 42 H 0.280 0.720 43 H 0.036 0.964 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.079 0.921 50 H 0.053 0.947 51 H 0.111 0.889 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.053 -3.070 -16.821 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.094 4.094 3 C -0.192 4.192 4 C -0.035 4.035 5 H 0.085 0.915 6 C 0.310 3.690 7 O -0.430 6.430 8 N -0.365 5.365 9 C -0.005 4.005 10 C 0.220 3.780 11 O -0.511 6.511 12 N -0.195 5.195 13 C -0.466 4.466 14 H 0.104 0.896 15 C -0.211 4.211 16 N -0.556 5.556 17 Si 0.819 3.181 18 H -0.195 1.195 19 H -0.197 1.197 20 H -0.194 1.194 21 N -0.237 5.237 22 C -0.105 4.105 23 C 0.037 3.963 24 H 0.082 0.918 25 C -0.200 4.200 26 O -0.311 6.311 27 C 0.030 3.970 28 H 0.144 0.856 29 C -0.228 4.228 30 C -0.107 4.107 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.249 0.751 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.232 0.768 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.098 0.902 50 H 0.072 0.928 51 H 0.129 0.871 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.397 -2.555 -16.699 24.250 hybrid contribution -1.548 -0.638 0.968 1.934 sum 15.849 -3.192 -15.731 22.558 Atomic orbital electron populations 1.21998 0.94449 1.02518 1.02639 1.21145 0.95646 0.97200 0.95445 1.21706 1.02015 0.94685 1.00824 1.21737 0.89309 0.98682 0.93758 0.91457 1.20721 0.80068 0.83100 0.85113 1.90667 1.56915 1.32093 1.63359 1.45871 1.20349 1.46137 1.24182 1.20727 0.93198 0.98622 0.87920 1.20401 0.88656 0.85726 0.83175 1.90473 1.67809 1.38614 1.54177 1.41852 1.17705 1.39057 1.20875 1.19727 0.95059 1.24261 1.07515 0.89569 1.26123 1.03474 0.96232 0.95285 1.69680 1.40603 1.30595 1.14772 0.84878 0.76747 0.78068 0.78370 1.19540 1.19651 1.19419 1.61935 1.04980 1.54196 1.02549 1.22835 0.96927 0.96740 0.94011 1.22054 0.90833 0.97543 0.85888 0.91821 1.21747 1.02151 1.00628 0.95463 1.88008 1.70807 1.58173 1.14099 1.22456 0.91667 0.94798 0.88072 0.85600 1.22236 1.01208 0.96028 1.03309 1.23016 0.96319 0.97960 0.93412 0.90219 0.91737 0.94359 0.87284 0.91427 0.91662 0.95200 0.75126 0.89043 0.89151 0.76775 0.91060 0.94535 0.91118 0.90774 0.90575 0.92000 0.92264 0.90247 0.92808 0.87102 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 8.37 71.98 0.60 -2.55 16 2 C -0.08 -1.40 2.32 -10.79 -0.03 -1.42 16 3 C -0.14 -2.81 8.72 71.98 0.63 -2.18 16 4 C 0.08 1.74 1.69 44.17 0.07 1.82 16 5 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 6 C 0.52 15.70 4.24 87.66 0.37 16.07 16 7 O -0.55 -19.69 14.58 -3.02 -0.04 -19.73 16 8 N -0.71 -22.93 4.59 -466.79 -2.14 -25.08 16 9 C 0.12 4.47 6.16 85.63 0.53 5.00 16 10 C 0.43 19.83 7.85 87.66 0.69 20.52 16 11 O -0.62 -31.78 15.24 -3.09 -0.05 -31.83 16 12 N -0.56 -27.97 5.29 -306.99 -1.62 -29.59 16 13 C -0.34 -18.43 9.68 84.04 0.81 -17.62 16 14 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 15 C -0.01 -0.54 5.50 84.92 0.47 -0.08 16 16 N -0.92 -48.59 13.05 21.66 0.28 -48.30 16 17 Si 1.00 41.56 29.55 68.60 2.03 43.59 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 N -0.51 -10.99 2.99 -874.35 -2.62 -13.61 16 22 C 0.02 0.55 4.58 86.31 0.40 0.95 16 23 C 0.09 2.02 3.03 30.63 0.09 2.11 16 24 H 0.06 1.46 6.49 -2.39 -0.02 1.44 16 25 C -0.14 -2.60 9.57 71.98 0.69 -1.91 16 26 O -0.39 -8.17 10.28 -148.98 -1.53 -9.70 16 27 C 0.09 1.37 3.92 30.63 0.12 1.49 16 28 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 29 C -0.17 -2.62 8.88 71.98 0.64 -1.98 16 30 C 0.02 0.32 4.70 86.31 0.41 0.73 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.04 0.97 6.70 -2.39 -0.02 0.96 16 34 H 0.11 1.44 6.29 -2.39 -0.02 1.42 16 35 H 0.07 1.39 7.70 -2.39 -0.02 1.37 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.03 0.81 6.52 -2.39 -0.02 0.80 16 38 H 0.41 13.27 6.95 -92.70 -0.64 12.63 16 39 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 42 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 43 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 2.01 6.26 -2.38 -0.01 2.00 16 45 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 47 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.05 1.09 6.13 -2.39 -0.01 1.08 16 51 H 0.11 1.32 6.12 -2.39 -0.01 1.31 16 52 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -65.30 402.63 0.35 -64.96 By element: Atomic # 1 Polarization: 48.81 SS G_CDS: -0.44 Total: 48.36 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 6.49 Total: 20.94 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -6.10 Total: -116.58 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -1.62 Total: -61.26 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -65.30 0.35 -64.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344176469.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.564 kcal (2) G-P(sol) polarization free energy of solvation -65.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds