Wall clock time and date at job start Wed Apr 1 2020 00:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99826 * 2 1 4 4 C 1.53002 * 109.46948 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47018 * 65.00119 * 4 3 2 6 6 C 1.34772 * 119.99990 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00085 * 180.02562 * 6 5 4 9 9 H 1.08992 * 109.49980 * 59.99748 * 8 6 5 10 10 C 1.53043 * 109.49906 * 180.02562 * 8 6 5 11 11 C 1.53047 * 109.53674 * 58.61924 * 10 8 6 12 12 C 1.53186 * 109.31365 * 61.36271 * 11 10 8 13 13 H 1.09005 * 109.58655 * 65.29670 * 12 11 10 14 14 C 1.53005 * 109.58792 * 185.57622 * 12 11 10 15 15 N 1.46923 * 108.77845 * 305.36904 * 12 11 10 16 16 C 1.34782 * 120.63007 * 233.58542 * 15 12 11 17 17 O 1.21596 * 119.99535 * 5.21391 * 16 15 12 18 18 N 1.34765 * 120.00250 * 185.21146 * 16 15 12 19 19 C 1.46501 * 120.00167 * 185.10440 * 18 16 15 20 20 C 1.53004 * 109.47387 * 179.97438 * 19 18 16 21 21 C 1.50702 * 109.47293 * 179.97438 * 20 19 18 22 22 H 1.07993 * 119.99678 * 359.97438 * 21 20 19 23 23 C 1.37873 * 119.99881 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00152 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 120.00230 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47239 * 89.99406 * 25 23 21 27 27 H 1.48495 * 109.46964 * 209.99883 * 25 23 21 28 28 H 1.48504 * 109.46803 * 329.99952 * 25 23 21 29 29 C 1.46920 * 118.74141 * 53.60367 * 15 12 11 30 30 H 1.09000 * 109.47654 * 299.99963 * 1 2 3 31 31 H 1.09005 * 109.47205 * 60.00113 * 1 2 3 32 32 H 1.09008 * 109.47042 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46720 * 60.00086 * 3 2 1 34 34 H 1.08997 * 109.47054 * 299.99767 * 3 2 1 35 35 H 1.09003 * 109.47016 * 305.00096 * 4 3 2 36 36 H 1.08995 * 109.47145 * 185.00201 * 4 3 2 37 37 H 0.97001 * 119.99901 * 359.97438 * 5 4 3 38 38 H 1.08994 * 109.46257 * 178.63673 * 10 8 6 39 39 H 1.08998 * 109.45496 * 298.59879 * 10 8 6 40 40 H 1.09001 * 109.49622 * 181.32062 * 11 10 8 41 41 H 1.09002 * 109.49442 * 301.37784 * 11 10 8 42 42 H 1.08999 * 109.46589 * 62.73385 * 14 12 11 43 43 H 1.08995 * 109.47261 * 182.73529 * 14 12 11 44 44 H 1.09004 * 109.46993 * 302.73934 * 14 12 11 45 45 H 0.97004 * 120.00266 * 5.10318 * 18 16 15 46 46 H 1.09006 * 109.47071 * 299.99964 * 19 18 16 47 47 H 1.08995 * 109.47420 * 59.99862 * 19 18 16 48 48 H 1.08998 * 109.47170 * 300.00342 * 20 19 18 49 49 H 1.09004 * 109.46776 * 59.99842 * 20 19 18 50 50 H 0.97001 * 120.00376 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.58773 * 186.60487 * 29 15 12 52 52 H 1.09003 * 109.58741 * 66.18288 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 5.2894 0.3561 -1.4738 7 8 6.1055 0.6824 -0.6380 8 6 5.7434 -0.2819 -2.7614 9 1 5.4280 0.3340 -3.6035 10 6 7.2690 -0.4031 -2.7614 11 6 7.7158 -1.2401 -1.5605 12 6 7.1190 -2.6465 -1.6729 13 1 7.5371 -3.1523 -2.5433 14 6 7.4461 -3.4450 -0.4094 15 7 5.6616 -2.5314 -1.8195 16 6 4.8334 -3.1970 -0.9902 17 8 5.2871 -3.8246 -0.0528 18 7 3.5025 -3.1669 -1.2000 19 6 2.5948 -3.7958 -0.2373 20 6 1.1498 -3.6195 -0.7085 21 6 0.2161 -4.2669 0.2815 22 1 0.6135 -4.7556 1.1587 23 6 -1.1456 -4.2353 0.0673 24 7 -1.9604 -4.8007 0.9309 25 14 -1.8330 -3.3905 -1.4504 26 1 -1.9316 -4.3714 -2.5610 27 1 -3.1820 -2.8488 -1.1471 28 1 -0.9317 -2.2798 -1.8496 29 6 5.1242 -1.6774 -2.8874 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8507 0.5685 0.8427 36 1 3.9784 2.1765 0.0902 37 1 3.3239 0.3027 -1.9191 38 1 7.5949 -0.8865 -3.6823 39 1 7.7121 0.5906 -2.6965 40 1 8.8038 -1.3065 -1.5480 41 1 7.3694 -0.7698 -0.6402 42 1 6.9820 -2.9665 0.4530 43 1 7.0626 -4.4601 -0.5118 44 1 8.5266 -3.4771 -0.2694 45 1 3.1456 -2.7289 -1.9885 46 1 2.8254 -4.8584 -0.1611 47 1 2.7181 -3.3263 0.7386 48 1 0.9195 -2.5568 -0.7844 49 1 1.0261 -4.0887 -1.6846 50 1 -2.9184 -4.7781 0.7805 51 1 4.0410 -1.6069 -2.7886 52 1 5.3777 -2.1033 -3.8583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345840485.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:49 Heat of formation + Delta-G solvation = -122.577121 kcal Electronic energy + Delta-G solvation = -33126.223936 eV Core-core repulsion = 28932.520424 eV Total energy + Delta-G solvation = -4193.703512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.05304 -40.62196 -38.97482 -38.05322 -36.70702 -35.82463 -34.95456 -33.77133 -33.63371 -31.58684 -30.73759 -28.53245 -27.14988 -26.78777 -25.67850 -24.32548 -23.35824 -22.66516 -22.25741 -21.35266 -20.52004 -18.97552 -18.81205 -17.84099 -17.61773 -17.33251 -17.04559 -16.80328 -16.35835 -16.23432 -16.12308 -15.67034 -15.54776 -15.46323 -15.18358 -14.94435 -14.77082 -14.55940 -14.30961 -14.02920 -13.88838 -13.54334 -13.33924 -13.16165 -13.12929 -12.99443 -12.91026 -12.58015 -12.50294 -12.12898 -12.06133 -12.02918 -11.85961 -11.78102 -11.66170 -11.55737 -11.42537 -10.72684 -10.68022 -10.51745 -10.26314 -10.05209 -9.97771 -9.36857 -8.23780 -6.30010 1.39959 1.42778 1.55020 1.65731 1.72275 2.21490 2.29184 2.40798 2.84164 3.03192 3.11600 3.61024 3.77192 3.84037 3.96352 4.04776 4.16371 4.17344 4.33799 4.38345 4.40012 4.44725 4.48484 4.51230 4.53385 4.57913 4.60569 4.72543 4.76131 4.80876 4.84722 4.87360 4.90060 5.00674 5.05062 5.14093 5.22971 5.30044 5.37829 5.41669 5.50403 5.57240 5.65561 5.75471 5.79412 6.00063 6.26421 6.30358 6.59073 6.75862 7.08882 7.33027 7.33311 7.69079 8.93599 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.004266 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.730493 B = 6561.491227 C = 7945.386775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.048 3.952 4 C 0.128 3.872 5 N -0.716 5.716 6 C 0.511 3.489 7 O -0.575 6.575 8 C -0.118 4.118 9 H 0.152 0.848 10 C -0.091 4.091 11 C -0.143 4.143 12 C 0.161 3.839 13 H 0.095 0.905 14 C -0.123 4.123 15 N -0.624 5.624 16 C 0.697 3.303 17 O -0.627 6.627 18 N -0.726 5.726 19 C 0.173 3.827 20 C -0.004 4.004 21 C -0.529 4.529 22 H 0.020 0.980 23 C 0.008 3.992 24 N -0.954 5.954 25 Si 0.948 3.052 26 H -0.272 1.272 27 H -0.286 1.286 28 H -0.220 1.220 29 C 0.112 3.888 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.092 0.908 37 H 0.411 0.589 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.030 0.970 43 H 0.047 0.953 44 H 0.057 0.943 45 H 0.403 0.597 46 H 0.032 0.968 47 H 0.026 0.974 48 H 0.047 0.953 49 H 0.029 0.971 50 H 0.266 0.734 51 H 0.086 0.914 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.716 17.323 -16.719 27.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.322 6.322 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.368 5.368 6 C 0.299 3.701 7 O -0.455 6.455 8 C -0.139 4.139 9 H 0.170 0.830 10 C -0.129 4.129 11 C -0.182 4.182 12 C 0.058 3.942 13 H 0.113 0.887 14 C -0.181 4.181 15 N -0.362 5.362 16 C 0.399 3.601 17 O -0.509 6.509 18 N -0.383 5.383 19 C 0.049 3.951 20 C -0.042 4.042 21 C -0.568 4.568 22 H 0.038 0.962 23 C -0.188 4.188 24 N -0.595 5.595 25 Si 0.770 3.230 26 H -0.198 1.198 27 H -0.212 1.212 28 H -0.142 1.142 29 C -0.010 4.010 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.110 0.890 37 H 0.247 0.753 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.240 0.760 46 H 0.050 0.950 47 H 0.045 0.955 48 H 0.065 0.935 49 H 0.047 0.953 50 H 0.075 0.925 51 H 0.104 0.896 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.539 16.923 -15.375 27.095 hybrid contribution -1.503 -0.060 0.198 1.517 sum 13.036 16.864 -15.177 26.166 Atomic orbital electron populations 1.22866 0.80236 1.02697 1.00999 1.88006 1.20469 1.28153 1.95587 1.22883 0.91662 0.85432 1.02887 1.21258 0.93243 0.98429 0.86715 1.45891 1.07689 1.62767 1.20479 1.21186 0.81893 0.77572 0.89428 1.90615 1.53637 1.52747 1.48465 1.21888 0.98882 0.97090 0.96069 0.83004 1.21309 0.91934 1.00879 0.98749 1.22226 1.00970 0.94206 1.00767 1.21250 0.77683 0.96597 0.98673 0.88716 1.21961 0.98962 1.00081 0.97055 1.47353 1.06072 1.48893 1.33908 1.16215 0.81574 0.80102 0.82247 1.90949 1.75387 1.50142 1.34426 1.45265 1.04096 1.61220 1.27768 1.20720 0.89045 0.94984 0.90391 1.19595 0.90429 0.98119 0.96048 1.21175 0.91912 1.35833 1.07836 0.96164 1.26005 0.96953 0.95689 1.00188 1.70093 1.03870 1.46620 1.38890 0.85740 0.78049 0.80545 0.78625 1.19779 1.21210 1.14214 1.21960 0.98579 0.88414 0.92094 0.93368 0.91739 0.91483 0.90901 0.89913 0.94595 0.89001 0.75259 0.87869 0.91176 0.89858 0.92178 0.95101 0.93378 0.92424 0.75962 0.94996 0.95541 0.93502 0.95255 0.92525 0.89583 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.90 113.37 1.24 1.98 16 2 O -0.40 -11.24 10.65 -148.98 -1.59 -12.83 16 3 C 0.05 0.91 6.07 71.98 0.44 1.35 16 4 C 0.13 2.81 6.06 86.38 0.52 3.34 16 5 N -0.72 -14.05 5.36 -463.06 -2.48 -16.54 16 6 C 0.51 11.29 6.58 87.66 0.58 11.87 16 7 O -0.57 -17.72 13.58 -3.04 -0.04 -17.76 16 8 C -0.12 -1.54 3.02 -11.46 -0.03 -1.57 16 9 H 0.15 0.72 8.14 -2.39 -0.02 0.70 16 10 C -0.09 -1.24 5.07 30.62 0.16 -1.09 16 11 C -0.14 -3.01 5.05 30.67 0.15 -2.85 16 12 C 0.16 3.75 3.49 44.97 0.16 3.90 16 13 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 14 C -0.12 -3.77 7.59 71.98 0.55 -3.23 16 15 N -0.62 -15.57 2.68 -812.90 -2.18 -17.75 16 16 C 0.70 24.62 8.21 179.06 1.47 26.09 16 17 O -0.63 -28.05 11.75 -4.02 -0.05 -28.09 16 18 N -0.73 -24.48 5.42 -478.53 -2.59 -27.07 16 19 C 0.17 7.55 5.62 86.38 0.49 8.04 16 20 C 0.00 -0.19 4.16 29.85 0.12 -0.06 16 21 C -0.53 -30.11 9.66 25.60 0.25 -29.86 16 22 H 0.02 1.32 7.99 -2.91 -0.02 1.29 16 23 C 0.01 0.46 5.47 84.65 0.46 0.92 16 24 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 25 Si 0.95 40.14 26.76 68.60 1.84 41.98 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 27 H -0.29 -12.00 7.11 99.48 0.71 -11.30 16 28 H -0.22 -7.75 6.26 99.48 0.62 -7.13 16 29 C 0.11 1.61 5.69 86.36 0.49 2.10 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.07 2.27 6.19 -2.38 -0.01 2.26 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.41 6.15 7.85 -92.71 -0.73 5.43 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.81 5.37 -2.39 -0.01 1.80 16 42 H 0.03 1.18 6.79 -2.39 -0.02 1.16 16 43 H 0.05 1.69 6.70 -2.39 -0.02 1.67 16 44 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.40 10.58 6.06 -92.70 -0.56 10.01 16 46 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.05 1.94 6.15 -2.39 -0.01 1.93 16 49 H 0.03 1.21 7.57 -2.39 -0.02 1.20 16 50 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 51 H 0.09 1.16 5.04 -2.39 -0.01 1.15 16 52 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -84.05 399.41 -0.20 -84.25 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -0.44 Total: 31.56 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 7.03 Total: 20.93 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -6.96 Total: -120.05 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -1.67 Total: -58.69 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 1.84 Total: 41.98 kcal Total: -84.05 -0.20 -84.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345840485.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.323 kcal (2) G-P(sol) polarization free energy of solvation -84.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds