Wall clock time and date at job start Wed Apr 1 2020 00:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00036 * 2 1 4 4 C 1.53010 * 109.47089 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47089 * 64.99653 * 4 3 2 6 6 C 1.34778 * 119.99987 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99681 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00045 * 179.97438 * 6 5 4 9 9 H 1.08998 * 109.49539 * 60.07192 * 8 6 5 10 10 C 1.53039 * 109.49688 * 180.16513 * 8 6 5 11 11 C 1.53040 * 109.53874 * 181.32177 * 10 8 6 12 12 C 1.53626 * 109.24146 * 298.51017 * 11 10 8 13 13 H 1.09003 * 109.73775 * 295.12125 * 12 11 10 14 14 C 1.53002 * 109.66767 * 174.55069 * 12 11 10 15 15 N 1.46921 * 108.54271 * 54.85597 * 12 11 10 16 16 C 1.34778 * 120.63348 * 126.36824 * 15 12 11 17 17 O 1.21589 * 119.99513 * 5.36857 * 16 15 12 18 18 N 1.34772 * 120.00402 * 185.36493 * 16 15 12 19 19 C 1.46503 * 120.00134 * 174.93259 * 18 16 15 20 20 C 1.52998 * 109.46952 * 180.02562 * 19 18 16 21 21 C 1.50702 * 109.46822 * 180.02562 * 20 19 18 22 22 H 1.07994 * 120.00049 * 359.97438 * 21 20 19 23 23 C 1.37876 * 119.99939 * 180.02562 * 21 20 19 24 24 N 1.31516 * 120.00191 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00069 * 179.72328 * 23 21 20 26 26 H 1.48499 * 109.47170 * 180.27174 * 25 23 21 27 27 H 1.48497 * 109.46762 * 300.26946 * 25 23 21 28 28 H 1.48490 * 109.47179 * 60.26927 * 25 23 21 29 29 C 1.46930 * 118.73765 * 306.09567 * 15 12 11 30 30 H 1.09003 * 109.47050 * 60.00136 * 1 2 3 31 31 H 1.08996 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47044 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47445 * 60.00420 * 3 2 1 34 34 H 1.08996 * 109.47211 * 299.99575 * 3 2 1 35 35 H 1.09000 * 109.46582 * 304.99731 * 4 3 2 36 36 H 1.08997 * 109.47003 * 185.00452 * 4 3 2 37 37 H 0.97003 * 120.00050 * 0.02562 * 5 4 3 38 38 H 1.09005 * 109.46509 * 301.33917 * 10 8 6 39 39 H 1.09002 * 109.46254 * 61.31260 * 10 8 6 40 40 H 1.08997 * 109.50213 * 58.58804 * 11 10 8 41 41 H 1.09005 * 109.49977 * 178.65326 * 11 10 8 42 42 H 1.08999 * 109.46740 * 293.49031 * 14 12 11 43 43 H 1.09000 * 109.46586 * 53.49132 * 14 12 11 44 44 H 1.08999 * 109.46854 * 173.48884 * 14 12 11 45 45 H 0.97000 * 119.99827 * 354.94012 * 18 16 15 46 46 H 1.08995 * 109.46670 * 60.00196 * 19 18 16 47 47 H 1.08994 * 109.46834 * 300.00464 * 19 18 16 48 48 H 1.08997 * 109.47163 * 60.00107 * 20 19 18 49 49 H 1.09008 * 109.47377 * 299.99837 * 20 19 18 50 50 H 0.97005 * 119.99551 * 359.72596 * 24 23 21 51 51 H 1.09005 * 109.58417 * 173.64519 * 29 15 12 52 52 H 1.09001 * 109.58760 * 293.92894 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 5.2884 0.3564 -1.4767 7 8 6.1051 0.6825 -0.6415 8 6 5.7411 -0.2822 -2.7643 9 1 5.4259 0.3340 -3.6064 10 6 7.2665 -0.4064 -2.7642 11 6 7.7298 -1.0246 -4.0852 12 6 7.1305 -2.4324 -4.2231 13 1 7.5305 -3.0808 -3.4435 14 6 7.4754 -3.0065 -5.5987 15 7 5.6713 -2.3349 -4.0819 16 6 4.8545 -2.8446 -5.0250 17 8 5.3188 -3.4763 -5.9544 18 7 3.5231 -2.6540 -4.9380 19 6 2.6456 -3.1110 -6.0185 20 6 1.1936 -2.7742 -5.6731 21 6 0.2909 -3.2448 -6.7843 22 1 0.7108 -3.7347 -7.6503 23 6 -1.0710 -3.0491 -6.6957 24 7 -1.5824 -2.4521 -5.6413 25 14 -2.1893 -3.6255 -8.0766 26 1 -3.5979 -3.2933 -7.7441 27 1 -1.8056 -2.9464 -9.3403 28 1 -2.0531 -5.0947 -8.2431 29 6 5.1193 -1.6765 -2.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8514 0.5682 0.8410 36 1 3.9786 2.1765 0.0890 37 1 3.3225 0.3039 -1.9208 38 1 7.7114 0.5822 -2.6502 39 1 7.5789 -1.0428 -1.9363 40 1 7.3964 -0.4017 -4.9152 41 1 8.8178 -1.0908 -4.0942 42 1 6.9691 -2.4278 -6.3713 43 1 8.5531 -2.9552 -5.7539 44 1 7.1498 -4.0454 -5.6509 45 1 3.1460 -2.2143 -4.1601 46 1 2.7499 -4.1891 -6.1398 47 1 2.9229 -2.6123 -6.9472 48 1 1.0897 -1.6960 -5.5521 49 1 0.9160 -3.2726 -4.7443 50 1 -1.0017 -2.1531 -4.9241 51 1 4.0376 -1.5866 -2.9901 52 1 5.3565 -2.2658 -2.0042 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345840487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:58 Heat of formation + Delta-G solvation = -113.456601 kcal Electronic energy + Delta-G solvation = -31270.187434 eV Core-core repulsion = 27076.879417 eV Total energy + Delta-G solvation = -4193.308017 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.90815 -39.80189 -38.24121 -37.27534 -35.29283 -35.00475 -33.57900 -32.89382 -32.33414 -30.18838 -29.17216 -27.64353 -26.44477 -25.12419 -24.26586 -23.42021 -22.48656 -21.72646 -21.01873 -20.35904 -19.55148 -18.00403 -17.17370 -17.00872 -16.70458 -16.52060 -16.36901 -15.62759 -15.52413 -15.24487 -14.91662 -14.61237 -14.36469 -14.18624 -13.95236 -13.83811 -13.73429 -13.58567 -13.13849 -12.85815 -12.69049 -12.45094 -12.26494 -12.20573 -12.05023 -12.03128 -11.64375 -11.50540 -11.29823 -11.13009 -11.00387 -10.98094 -10.94196 -10.44746 -10.20368 -10.13342 -9.96439 -9.93900 -9.36199 -9.11236 -8.71575 -8.68873 -8.44760 -8.28807 -6.46838 -4.16284 2.34455 2.74553 2.93445 3.41433 3.42638 3.43172 3.46192 3.61103 4.05045 4.31528 4.45667 4.50752 4.55961 4.59613 4.75351 4.77625 4.95772 4.97322 4.99734 5.12470 5.15719 5.21376 5.26080 5.27548 5.31546 5.45718 5.51530 5.53377 5.59762 5.60174 5.72923 5.80352 5.88793 6.04492 6.09015 6.13401 6.24567 6.30522 6.42594 6.60954 6.73614 6.80986 6.90423 7.06315 7.20933 7.29677 7.33451 7.95097 8.05600 8.24734 8.35908 8.77212 8.90550 9.55195 10.94202 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007126 B = 0.003775 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3928.479526 B = 7416.165994 C =11055.472821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.045 3.955 4 C 0.122 3.878 5 N -0.725 5.725 6 C 0.522 3.478 7 O -0.539 6.539 8 C -0.123 4.123 9 H 0.104 0.896 10 C -0.096 4.096 11 C -0.132 4.132 12 C 0.160 3.840 13 H 0.068 0.932 14 C -0.134 4.134 15 N -0.630 5.630 16 C 0.703 3.297 17 O -0.582 6.582 18 N -0.743 5.743 19 C 0.147 3.853 20 C 0.001 3.999 21 C -0.600 4.600 22 H 0.053 0.947 23 C 0.018 3.982 24 N -0.910 5.910 25 Si 1.070 2.930 26 H -0.282 1.282 27 H -0.287 1.287 28 H -0.287 1.287 29 C 0.125 3.875 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.406 0.594 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.388 0.612 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.011 0.989 49 H 0.013 0.987 50 H 0.267 0.733 51 H 0.082 0.918 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.611 8.571 11.880 19.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.032 4.032 4 C -0.001 4.001 5 N -0.378 5.378 6 C 0.308 3.692 7 O -0.416 6.416 8 C -0.145 4.145 9 H 0.122 0.878 10 C -0.134 4.134 11 C -0.170 4.170 12 C 0.056 3.944 13 H 0.086 0.914 14 C -0.191 4.191 15 N -0.369 5.369 16 C 0.405 3.595 17 O -0.461 6.461 18 N -0.399 5.399 19 C 0.024 3.976 20 C -0.036 4.036 21 C -0.639 4.639 22 H 0.071 0.929 23 C -0.186 4.186 24 N -0.546 5.546 25 Si 0.898 3.102 26 H -0.208 1.208 27 H -0.213 1.213 28 H -0.213 1.213 29 C 0.000 4.000 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.241 0.759 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.223 0.777 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.030 0.970 49 H 0.031 0.969 50 H 0.077 0.923 51 H 0.100 0.900 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.026 8.101 11.277 18.369 hybrid contribution 0.696 0.570 0.717 1.151 sum 12.723 8.671 11.994 19.517 Atomic orbital electron populations 1.22813 0.80090 1.03562 1.00150 1.87924 1.20441 1.26907 1.95465 1.22811 0.92843 0.85976 1.01538 1.21385 0.92200 0.99104 0.87448 1.46008 1.07749 1.63212 1.20807 1.20496 0.82058 0.78339 0.88319 1.90698 1.52825 1.51400 1.46631 1.21762 0.98915 0.97605 0.96254 0.87837 1.21318 0.91967 1.02244 0.97898 1.22146 1.00816 0.96386 0.97685 1.21207 0.78056 0.95770 0.99336 0.91383 1.22155 0.98433 1.03677 0.94872 1.47329 1.06119 1.61697 1.21746 1.15995 0.81472 0.79879 0.82165 1.90941 1.74288 1.45514 1.35357 1.45833 1.04979 1.64157 1.24898 1.21418 0.89815 0.98762 0.87587 1.19438 0.89877 0.96407 0.97899 1.21884 0.93716 1.42668 1.05647 0.92867 1.25853 0.96765 0.94781 1.01150 1.70813 1.39056 1.36777 1.07998 0.83523 0.75904 0.76246 0.74560 1.20763 1.21327 1.21301 1.21455 0.97995 0.91355 0.89152 0.93457 0.89062 0.94107 0.91583 0.92320 0.90476 0.89948 0.75902 0.90831 0.90951 0.91263 0.90322 0.91288 0.94231 0.90356 0.77664 0.92520 0.92703 0.97036 0.96926 0.92272 0.89960 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -3.97 10.65 -35.23 -0.38 -4.34 16 3 C 0.05 0.34 6.07 37.16 0.23 0.57 16 4 C 0.12 1.03 6.06 -4.04 -0.02 1.00 16 5 N -0.72 -6.68 5.41 -60.29 -0.33 -7.00 16 6 C 0.52 5.67 7.16 -10.99 -0.08 5.60 16 7 O -0.54 -7.53 15.98 5.56 0.09 -7.44 16 8 C -0.12 -1.20 2.68 -91.66 -0.25 -1.45 16 9 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 10 C -0.10 -0.93 4.46 -26.69 -0.12 -1.05 16 11 C -0.13 -1.25 5.40 -26.39 -0.14 -1.39 16 12 C 0.16 1.86 3.51 -67.37 -0.24 1.63 16 13 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 14 C -0.13 -1.77 7.62 37.16 0.28 -1.49 16 15 N -0.63 -8.27 2.97 -170.65 -0.51 -8.78 16 16 C 0.70 12.00 8.10 -86.92 -0.70 11.29 16 17 O -0.58 -11.67 11.91 5.29 0.06 -11.61 16 18 N -0.74 -12.81 5.47 -65.23 -0.36 -13.16 16 19 C 0.15 3.10 5.62 -4.04 -0.02 3.08 16 20 C 0.00 0.03 4.40 -27.88 -0.12 -0.09 16 21 C -0.60 -16.55 9.11 -34.44 -0.31 -16.87 16 22 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 23 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 24 N -0.91 -26.54 13.65 55.43 0.76 -25.79 16 25 Si 1.07 24.60 29.90 -169.99 -5.08 19.52 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 29 C 0.13 1.33 5.57 -3.71 -0.02 1.31 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.41 3.39 8.01 -40.82 -0.33 3.06 16 38 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.07 6.82 -51.93 -0.35 0.71 16 43 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 1.22 6.67 -51.93 -0.35 0.87 16 45 H 0.39 5.79 5.93 -40.82 -0.24 5.54 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 49 H 0.01 0.31 8.01 -51.92 -0.42 -0.10 16 50 H 0.27 7.64 7.22 -40.82 -0.29 7.35 16 51 H 0.08 0.83 5.16 -51.93 -0.27 0.57 16 52 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 411.37 15.07 6.20 6.20 Total: -1.00 -33.70 411.37 -9.10 -42.80 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -9.05 Total: 5.67 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -0.51 Total: 3.94 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.43 Total: -54.73 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.22 Total: -23.39 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.52 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.70 -9.10 -42.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345840487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.658 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds