Wall clock time and date at job start Wed Apr 1 2020 00:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00036 * 2 1 4 4 C 1.53010 * 109.47089 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47089 * 64.99653 * 4 3 2 6 6 C 1.34778 * 119.99987 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99681 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00045 * 179.97438 * 6 5 4 9 9 H 1.08998 * 109.49539 * 60.07192 * 8 6 5 10 10 C 1.53039 * 109.49688 * 180.16513 * 8 6 5 11 11 C 1.53040 * 109.53874 * 181.32177 * 10 8 6 12 12 C 1.53626 * 109.24146 * 298.51017 * 11 10 8 13 13 H 1.09003 * 109.73775 * 295.12125 * 12 11 10 14 14 C 1.53002 * 109.66767 * 174.55069 * 12 11 10 15 15 N 1.46921 * 108.54271 * 54.85597 * 12 11 10 16 16 C 1.34778 * 120.63348 * 126.36824 * 15 12 11 17 17 O 1.21589 * 119.99513 * 5.36857 * 16 15 12 18 18 N 1.34772 * 120.00402 * 185.36493 * 16 15 12 19 19 C 1.46503 * 120.00134 * 174.93259 * 18 16 15 20 20 C 1.52998 * 109.46952 * 180.02562 * 19 18 16 21 21 C 1.50702 * 109.46822 * 180.02562 * 20 19 18 22 22 H 1.07994 * 120.00049 * 359.97438 * 21 20 19 23 23 C 1.37876 * 119.99939 * 180.02562 * 21 20 19 24 24 N 1.31516 * 120.00191 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00069 * 179.72328 * 23 21 20 26 26 H 1.48499 * 109.47170 * 180.27174 * 25 23 21 27 27 H 1.48497 * 109.46762 * 300.26946 * 25 23 21 28 28 H 1.48490 * 109.47179 * 60.26927 * 25 23 21 29 29 C 1.46930 * 118.73765 * 306.09567 * 15 12 11 30 30 H 1.09003 * 109.47050 * 60.00136 * 1 2 3 31 31 H 1.08996 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47044 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47445 * 60.00420 * 3 2 1 34 34 H 1.08996 * 109.47211 * 299.99575 * 3 2 1 35 35 H 1.09000 * 109.46582 * 304.99731 * 4 3 2 36 36 H 1.08997 * 109.47003 * 185.00452 * 4 3 2 37 37 H 0.97003 * 120.00050 * 0.02562 * 5 4 3 38 38 H 1.09005 * 109.46509 * 301.33917 * 10 8 6 39 39 H 1.09002 * 109.46254 * 61.31260 * 10 8 6 40 40 H 1.08997 * 109.50213 * 58.58804 * 11 10 8 41 41 H 1.09005 * 109.49977 * 178.65326 * 11 10 8 42 42 H 1.08999 * 109.46740 * 293.49031 * 14 12 11 43 43 H 1.09000 * 109.46586 * 53.49132 * 14 12 11 44 44 H 1.08999 * 109.46854 * 173.48884 * 14 12 11 45 45 H 0.97000 * 119.99827 * 354.94012 * 18 16 15 46 46 H 1.08995 * 109.46670 * 60.00196 * 19 18 16 47 47 H 1.08994 * 109.46834 * 300.00464 * 19 18 16 48 48 H 1.08997 * 109.47163 * 60.00107 * 20 19 18 49 49 H 1.09008 * 109.47377 * 299.99837 * 20 19 18 50 50 H 0.97005 * 119.99551 * 359.72596 * 24 23 21 51 51 H 1.09005 * 109.58417 * 173.64519 * 29 15 12 52 52 H 1.09001 * 109.58760 * 293.92894 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 5.2884 0.3564 -1.4767 7 8 6.1051 0.6825 -0.6415 8 6 5.7411 -0.2822 -2.7643 9 1 5.4259 0.3340 -3.6064 10 6 7.2665 -0.4064 -2.7642 11 6 7.7298 -1.0246 -4.0852 12 6 7.1305 -2.4324 -4.2231 13 1 7.5305 -3.0808 -3.4435 14 6 7.4754 -3.0065 -5.5987 15 7 5.6713 -2.3349 -4.0819 16 6 4.8545 -2.8446 -5.0250 17 8 5.3188 -3.4763 -5.9544 18 7 3.5231 -2.6540 -4.9380 19 6 2.6456 -3.1110 -6.0185 20 6 1.1936 -2.7742 -5.6731 21 6 0.2909 -3.2448 -6.7843 22 1 0.7108 -3.7347 -7.6503 23 6 -1.0710 -3.0491 -6.6957 24 7 -1.5824 -2.4521 -5.6413 25 14 -2.1893 -3.6255 -8.0766 26 1 -3.5979 -3.2933 -7.7441 27 1 -1.8056 -2.9464 -9.3403 28 1 -2.0531 -5.0947 -8.2431 29 6 5.1193 -1.6765 -2.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8514 0.5682 0.8410 36 1 3.9786 2.1765 0.0890 37 1 3.3225 0.3039 -1.9208 38 1 7.7114 0.5822 -2.6502 39 1 7.5789 -1.0428 -1.9363 40 1 7.3964 -0.4017 -4.9152 41 1 8.8178 -1.0908 -4.0942 42 1 6.9691 -2.4278 -6.3713 43 1 8.5531 -2.9552 -5.7539 44 1 7.1498 -4.0454 -5.6509 45 1 3.1460 -2.2143 -4.1601 46 1 2.7499 -4.1891 -6.1398 47 1 2.9229 -2.6123 -6.9472 48 1 1.0897 -1.6960 -5.5521 49 1 0.9160 -3.2726 -4.7443 50 1 -1.0017 -2.1531 -4.9241 51 1 4.0376 -1.5866 -2.9901 52 1 5.3565 -2.2658 -2.0042 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345840487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:57 Heat of formation + Delta-G solvation = -137.130274 kcal Electronic energy + Delta-G solvation = -31271.214002 eV Core-core repulsion = 27076.879417 eV Total energy + Delta-G solvation = -4194.334585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.98639 -40.83704 -38.99971 -38.37986 -36.89958 -35.83389 -35.30149 -33.92538 -33.63548 -31.11901 -30.72314 -28.62366 -27.16878 -26.48862 -25.79238 -24.28818 -23.70534 -22.91439 -22.32127 -21.32348 -20.71927 -19.19908 -18.65890 -18.06214 -17.73712 -17.45842 -17.35628 -16.89610 -16.35097 -16.23760 -15.92992 -15.72108 -15.62930 -15.46552 -15.28512 -15.19781 -14.80993 -14.67605 -14.27307 -14.07482 -13.89120 -13.62792 -13.46858 -13.27132 -13.16731 -13.07475 -12.83098 -12.71404 -12.30382 -12.20084 -12.15384 -12.09466 -12.01094 -11.94061 -11.85418 -11.73565 -11.00336 -10.84860 -10.65559 -10.54839 -10.35249 -10.16826 -10.11123 -9.53469 -8.68565 -6.39115 1.41750 1.56097 1.63165 1.63791 1.82978 2.09928 2.13233 2.56591 2.76914 2.86479 3.16400 3.47603 3.62594 3.71965 3.87275 3.91139 4.07701 4.15060 4.18907 4.21768 4.32957 4.36734 4.39178 4.39645 4.51284 4.55305 4.59076 4.62897 4.64592 4.71303 4.74486 4.82420 4.86193 4.90887 4.97296 5.09696 5.12575 5.14562 5.30185 5.33914 5.37430 5.40278 5.51417 5.70630 5.86960 5.98254 6.15581 6.17302 6.42181 6.57100 6.93364 7.12503 7.39544 7.55217 8.73850 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007126 B = 0.003775 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3928.479526 B = 7416.165994 C =11055.472821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.047 3.953 4 C 0.121 3.879 5 N -0.719 5.719 6 C 0.525 3.475 7 O -0.570 6.570 8 C -0.115 4.115 9 H 0.110 0.890 10 C -0.092 4.092 11 C -0.120 4.120 12 C 0.154 3.846 13 H 0.083 0.917 14 C -0.126 4.126 15 N -0.621 5.621 16 C 0.700 3.300 17 O -0.615 6.615 18 N -0.737 5.737 19 C 0.168 3.832 20 C 0.011 3.989 21 C -0.623 4.623 22 H 0.048 0.952 23 C -0.028 4.028 24 N -0.931 5.931 25 Si 1.114 2.886 26 H -0.281 1.281 27 H -0.271 1.271 28 H -0.273 1.273 29 C 0.125 3.875 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.411 0.589 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.042 0.958 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.400 0.600 46 H 0.040 0.960 47 H 0.044 0.956 48 H 0.008 0.992 49 H 0.003 0.997 50 H 0.259 0.741 51 H 0.086 0.914 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.166 9.353 12.249 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.030 4.030 4 C -0.002 4.002 5 N -0.371 5.371 6 C 0.311 3.689 7 O -0.449 6.449 8 C -0.137 4.137 9 H 0.128 0.872 10 C -0.130 4.130 11 C -0.159 4.159 12 C 0.051 3.949 13 H 0.101 0.899 14 C -0.183 4.183 15 N -0.359 5.359 16 C 0.402 3.598 17 O -0.496 6.496 18 N -0.395 5.395 19 C 0.044 3.956 20 C -0.027 4.027 21 C -0.661 4.661 22 H 0.066 0.934 23 C -0.227 4.227 24 N -0.567 5.567 25 Si 0.935 3.065 26 H -0.207 1.207 27 H -0.196 1.196 28 H -0.198 1.198 29 C 0.001 3.999 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.247 0.753 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.238 0.762 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.026 0.974 49 H 0.022 0.978 50 H 0.069 0.931 51 H 0.104 0.896 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.601 8.910 11.691 19.361 hybrid contribution 0.577 0.340 0.661 0.941 sum 13.178 9.249 12.353 20.292 Atomic orbital electron populations 1.22852 0.79636 1.03405 1.00928 1.87882 1.21097 1.28515 1.95668 1.22905 0.91982 0.85220 1.02883 1.21459 0.92915 0.99231 0.86584 1.46036 1.07414 1.62463 1.21149 1.20582 0.82190 0.77976 0.88133 1.90689 1.53659 1.52972 1.47620 1.21694 0.99204 0.96822 0.96001 0.87156 1.21284 0.91568 1.02358 0.97778 1.22068 1.02022 0.94442 0.97336 1.21442 0.77040 0.97584 0.98824 0.89899 1.21977 0.99802 1.01449 0.95051 1.47340 1.06495 1.60701 1.21344 1.16122 0.81363 0.79828 0.82526 1.90942 1.74779 1.46945 1.36945 1.45521 1.05020 1.64452 1.24500 1.20884 0.88841 0.97603 0.88273 1.19264 0.91150 0.95742 0.96512 1.22293 0.94694 1.42683 1.06414 0.93359 1.27240 0.98636 0.94225 1.02559 1.70921 1.39074 1.38136 1.08601 0.82958 0.74168 0.76780 0.72547 1.20654 1.19641 1.19790 1.21581 0.98257 0.91868 0.88209 0.93688 0.89784 0.92306 0.89601 0.91544 0.91577 0.88984 0.75344 0.90542 0.91123 0.91755 0.88006 0.93884 0.91443 0.93156 0.76229 0.94111 0.93788 0.97406 0.97827 0.93113 0.89590 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.41 -8.04 10.65 -148.98 -1.59 -9.63 16 3 C 0.05 0.64 6.07 71.99 0.44 1.07 16 4 C 0.12 1.89 6.06 86.38 0.52 2.42 16 5 N -0.72 -12.31 5.41 -463.06 -2.50 -14.81 16 6 C 0.53 10.65 7.16 87.66 0.63 11.28 16 7 O -0.57 -15.21 15.98 -3.04 -0.05 -15.26 16 8 C -0.11 -2.04 2.68 -11.47 -0.03 -2.07 16 9 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 10 C -0.09 -1.56 4.46 30.62 0.14 -1.43 16 11 C -0.12 -1.98 5.40 30.82 0.17 -1.82 16 12 C 0.15 3.32 3.51 45.12 0.16 3.48 16 13 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 14 C -0.13 -3.23 7.62 71.98 0.55 -2.68 16 15 N -0.62 -15.62 2.97 -812.07 -2.41 -18.03 16 16 C 0.70 23.75 8.10 179.06 1.45 25.20 16 17 O -0.62 -25.05 11.91 -4.00 -0.05 -25.09 16 18 N -0.74 -25.36 5.47 -478.55 -2.62 -27.98 16 19 C 0.17 7.21 5.62 86.38 0.49 7.69 16 20 C 0.01 0.53 4.40 29.85 0.13 0.66 16 21 C -0.62 -34.52 9.11 25.60 0.23 -34.29 16 22 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 23 C -0.03 -1.55 5.46 84.65 0.46 -1.09 16 24 N -0.93 -54.35 13.65 21.45 0.29 -54.06 16 25 Si 1.11 48.84 29.90 68.60 2.05 50.89 16 26 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 C 0.12 2.46 5.57 86.36 0.48 2.94 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.41 6.32 8.01 -92.71 -0.74 5.58 16 38 H 0.08 1.31 8.07 -2.38 -0.02 1.29 16 39 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.04 1.32 6.82 -2.39 -0.02 1.31 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 44 H 0.05 1.57 6.67 -2.39 -0.02 1.56 16 45 H 0.40 11.71 5.93 -92.71 -0.55 11.16 16 46 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.01 0.38 8.01 -2.39 -0.02 0.36 16 49 H 0.00 0.17 8.01 -2.38 -0.02 0.16 16 50 H 0.26 15.02 7.22 -92.70 -0.67 14.35 16 51 H 0.09 1.63 5.16 -2.38 -0.01 1.61 16 52 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -72.55 411.37 -0.09 -72.63 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.28 Total: 28.25 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 7.06 Total: 13.09 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -7.24 Total: -114.88 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -1.68 Total: -49.99 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.05 Total: 50.89 kcal Total: -72.55 -0.09 -72.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345840487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.497 kcal (2) G-P(sol) polarization free energy of solvation -72.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds