Wall clock time and date at job start Wed Apr 1 2020 00:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47400 * 2 1 4 4 O 1.42899 * 109.47217 * 180.02562 * 3 2 1 5 5 C 1.42906 * 114.00012 * 178.93330 * 4 3 2 6 6 C 1.52998 * 109.47131 * 58.27692 * 5 4 3 7 7 N 1.46503 * 109.47410 * 59.15481 * 6 5 4 8 8 C 1.34770 * 120.00020 * 183.80172 * 7 6 5 9 9 O 1.21590 * 119.99886 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99981 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00124 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.47300 * 179.97438 * 11 10 8 13 13 O 1.21294 * 119.99737 * 359.97438 * 12 11 10 14 14 N 1.34768 * 119.99905 * 179.97438 * 12 11 10 15 15 C 1.37106 * 120.00087 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99743 * 359.97438 * 15 14 12 17 17 C 1.38948 * 120.00018 * 179.97438 * 15 14 12 18 18 N 1.31406 * 120.00184 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99491 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47456 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47035 * 120.00263 * 19 17 15 22 22 H 1.48498 * 109.47115 * 239.99928 * 19 17 15 23 23 C 1.52995 * 109.47263 * 298.27242 * 5 4 3 24 24 C 1.53005 * 109.46958 * 300.00312 * 23 5 4 25 25 C 1.52991 * 109.47076 * 299.99456 * 24 23 5 26 26 C 1.53005 * 109.47129 * 60.00296 * 25 24 23 27 27 C 1.52996 * 109.46980 * 300.00235 * 26 25 24 28 28 H 1.08993 * 109.47447 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46839 * 300.00332 * 1 2 3 30 30 H 1.08996 * 109.47216 * 59.99664 * 1 2 3 31 31 H 1.08999 * 109.46839 * 239.99668 * 2 1 3 32 32 H 1.09006 * 109.46989 * 119.99863 * 2 1 3 33 33 H 1.08999 * 109.47396 * 60.00009 * 3 2 1 34 34 H 1.09006 * 109.46937 * 299.99894 * 3 2 1 35 35 H 1.09002 * 109.47311 * 179.15991 * 6 5 4 36 36 H 1.09005 * 109.46808 * 299.15852 * 6 5 4 37 37 H 0.96993 * 119.99757 * 3.80679 * 7 6 5 38 38 H 0.96998 * 120.00280 * 359.97438 * 10 8 7 39 39 H 1.09005 * 109.46978 * 299.99535 * 11 10 8 40 40 H 1.08997 * 109.47436 * 59.99289 * 11 10 8 41 41 H 0.97003 * 120.00264 * 359.97438 * 14 12 11 42 42 H 0.97002 * 119.99827 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.47143 * 59.99965 * 23 5 4 44 44 H 1.08998 * 109.47163 * 180.02562 * 23 5 4 45 45 H 1.08998 * 109.47257 * 59.99967 * 24 23 5 46 46 H 1.09009 * 109.46682 * 180.02562 * 24 23 5 47 47 H 1.08998 * 109.47495 * 300.00365 * 25 24 23 48 48 H 1.09001 * 109.47396 * 180.02562 * 25 24 23 49 49 H 1.08991 * 109.47149 * 179.97438 * 26 25 24 50 50 H 1.09003 * 109.46736 * 60.00151 * 26 25 24 51 51 H 1.08998 * 109.46871 * 299.99458 * 27 26 25 52 52 H 1.09000 * 109.46769 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4423 -0.0006 5 6 4.0503 2.7476 -0.0250 6 6 3.5654 3.5446 1.1877 7 7 3.9475 2.8446 2.4167 8 6 3.5573 3.3240 3.6143 9 8 2.8879 4.3372 3.6747 10 7 3.9092 2.6804 4.7449 11 6 3.4847 3.2012 6.0467 12 6 4.0047 2.3043 7.1405 13 8 4.6645 1.3260 6.8601 14 7 3.7365 2.5893 8.4301 15 6 4.2099 1.7736 9.4253 16 1 4.7975 0.9025 9.1756 17 6 3.9339 2.0677 10.7549 18 7 3.2185 3.1274 11.0586 19 14 4.5784 0.9559 12.1106 20 1 5.3498 -0.1616 11.5095 21 1 5.4616 1.7371 13.0133 22 1 3.4368 0.4088 12.8867 23 6 3.6331 3.4679 -1.3087 24 6 4.1181 2.6708 -2.5213 25 6 5.6426 2.5511 -2.4763 26 6 6.0600 1.8308 -1.1925 27 6 5.5750 2.6278 0.0201 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9562 -0.8901 35 1 4.0204 4.5350 1.1772 36 1 2.4805 3.6427 1.1478 37 1 4.4812 2.0362 2.3684 38 1 4.4429 1.8719 4.6967 39 1 3.8812 4.2075 6.1823 40 1 2.3959 3.2311 6.0887 41 1 3.2090 3.3719 8.6544 42 1 3.0255 3.3324 11.9869 43 1 2.5469 3.5532 -1.3408 44 1 4.0768 4.4633 -1.3274 45 1 3.6747 1.6752 -2.5027 46 1 3.8212 3.1842 -3.4359 47 1 6.0860 3.5466 -2.4949 48 1 5.9883 1.9836 -3.3404 49 1 7.1461 1.7451 -1.1607 50 1 5.6166 0.8352 -1.1740 51 1 6.0184 3.6233 0.0015 52 1 5.8727 2.1149 0.9346 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358287626.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:15 Heat of formation + Delta-G solvation = -141.989749 kcal Electronic energy + Delta-G solvation = -30613.752638 eV Core-core repulsion = 26419.207330 eV Total energy + Delta-G solvation = -4194.545307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.67011 -39.46341 -38.13382 -36.58427 -34.80709 -34.34410 -33.61989 -33.51544 -31.37168 -31.19552 -30.71735 -27.77782 -26.42098 -25.71207 -24.28555 -23.15062 -21.74194 -21.27713 -20.57723 -19.94175 -19.55502 -18.42266 -17.97269 -16.72123 -16.45837 -16.01792 -15.68729 -15.64994 -15.31520 -15.10694 -14.67414 -14.48552 -14.26322 -14.24253 -13.99640 -13.76425 -13.58535 -13.43573 -13.20342 -12.87360 -12.71109 -12.56142 -12.31350 -12.15611 -12.06196 -11.90080 -11.81048 -11.62018 -11.40416 -11.19921 -11.17726 -11.13151 -10.82802 -10.62551 -10.39870 -10.31449 -10.22959 -10.03163 -9.63918 -9.63136 -9.12745 -8.60333 -8.55869 -8.08295 -6.49980 -3.91851 2.80955 3.11277 3.23345 3.30117 3.37141 3.45549 3.77284 4.10435 4.24785 4.28317 4.39485 4.52652 4.70556 4.74887 4.81221 4.86744 4.92255 4.94640 5.04996 5.08833 5.17856 5.18837 5.20127 5.25396 5.29568 5.39699 5.46777 5.51562 5.56130 5.62585 5.69787 5.75752 5.82361 5.85922 5.90475 5.91358 5.93885 5.97006 6.00733 6.03067 6.10483 6.16629 6.51528 6.79016 7.01741 7.14702 7.47710 7.94466 8.28059 8.47082 8.83388 9.06464 9.41485 9.89420 10.67059 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016673 B = 0.002052 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.922660 B =13641.339616 C =14147.995706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.055 3.945 4 O -0.366 6.366 5 C 0.111 3.889 6 C 0.116 3.884 7 N -0.741 5.741 8 C 0.704 3.296 9 O -0.601 6.601 10 N -0.724 5.724 11 C 0.129 3.871 12 C 0.429 3.571 13 O -0.597 6.597 14 N -0.550 5.550 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.895 5.895 19 Si 0.932 3.068 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.141 4.141 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.104 4.104 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.400 0.600 38 H 0.407 0.593 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.396 0.604 42 H 0.273 0.727 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.072 0.928 51 H 0.078 0.922 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 -0.632 -27.439 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.022 4.022 4 O -0.285 6.285 5 C 0.071 3.929 6 C -0.009 4.009 7 N -0.398 5.398 8 C 0.404 3.596 9 O -0.480 6.480 10 N -0.381 5.381 11 C 0.001 3.999 12 C 0.215 3.785 13 O -0.484 6.484 14 N -0.185 5.185 15 C -0.433 4.433 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.535 5.535 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.180 4.180 24 C -0.150 4.150 25 C -0.157 4.157 26 C -0.154 4.154 27 C -0.142 4.142 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.235 0.765 38 H 0.244 0.756 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.230 0.770 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.096 0.904 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.514 -0.443 -27.327 27.336 hybrid contribution 0.176 -0.398 0.932 1.029 sum -0.337 -0.841 -26.395 26.411 Atomic orbital electron populations 1.21695 0.94885 1.02190 1.02024 1.21423 0.95644 0.95608 1.03143 1.22606 0.81354 0.97840 1.00384 1.87945 1.19410 1.26397 1.94793 1.21713 0.94459 0.83768 0.92934 1.21723 1.00685 0.95793 0.82687 1.44893 1.59535 1.31278 1.04122 1.15852 0.80230 0.83157 0.80370 1.90898 1.44407 1.26199 1.86516 1.44757 1.58279 1.31073 1.04031 1.20774 1.00172 0.97409 0.81592 1.19775 0.86501 0.88228 0.83993 1.90494 1.44671 1.30723 1.82481 1.41797 1.46763 1.25922 1.04038 1.19774 1.31008 1.07666 0.84845 0.87648 1.25326 0.96772 0.97113 0.98597 1.69623 1.37942 1.25934 1.20016 0.85759 0.78520 0.79718 0.80096 1.19147 1.20634 1.20631 1.22051 1.01548 0.99781 0.94571 1.21418 0.96033 1.00761 0.96815 1.21535 0.95740 1.00559 0.97821 1.21463 1.00293 0.99896 0.93712 1.21534 0.91705 1.01490 0.99429 0.92080 0.92389 0.92716 0.91448 0.91081 0.92849 0.93278 0.91020 0.91260 0.76526 0.75600 0.90060 0.90104 0.77029 0.91668 0.91307 0.90603 0.91298 0.92125 0.92186 0.92101 0.92014 0.90942 0.90381 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.01 6.30 -26.73 -0.17 -1.18 16 3 C 0.05 0.49 5.13 37.15 0.19 0.68 16 4 O -0.37 -3.45 8.39 -35.23 -0.30 -3.75 16 5 C 0.11 0.94 0.36 -90.62 -0.03 0.91 16 6 C 0.12 1.25 4.13 -4.04 -0.02 1.23 16 7 N -0.74 -9.30 5.18 -65.22 -0.34 -9.63 16 8 C 0.70 11.71 8.57 -86.93 -0.74 10.97 16 9 O -0.60 -11.93 16.34 5.29 0.09 -11.85 16 10 N -0.72 -12.50 5.53 -66.41 -0.37 -12.87 16 11 C 0.13 2.45 6.15 -5.19 -0.03 2.42 16 12 C 0.43 9.97 7.85 -10.99 -0.09 9.89 16 13 O -0.60 -15.42 15.24 5.54 0.08 -15.33 16 14 N -0.55 -13.78 5.29 -10.96 -0.06 -13.84 16 15 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 16 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 17 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 18 N -0.89 -24.05 13.05 55.50 0.72 -23.32 16 19 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.14 -1.00 4.40 -26.73 -0.12 -1.12 16 24 C -0.11 -0.74 5.78 -26.73 -0.15 -0.89 16 25 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 26 C -0.12 -0.84 5.78 -26.73 -0.15 -0.99 16 27 C -0.10 -0.82 4.78 -26.73 -0.13 -0.95 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.55 6.46 -51.93 -0.34 0.22 16 34 H 0.05 0.38 6.40 -51.93 -0.33 0.05 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.81 6.59 -51.93 -0.34 0.47 16 37 H 0.40 4.47 7.17 -40.82 -0.29 4.18 16 38 H 0.41 6.88 7.45 -40.82 -0.30 6.58 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.07 0.48 6.55 -51.93 -0.34 0.14 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.51 7.68 -51.93 -0.40 0.11 16 46 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.60 7.68 -51.93 -0.40 0.20 16 51 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.07 0.61 6.84 -51.93 -0.36 0.26 16 LS Contribution 410.34 15.07 6.18 6.18 Total: -1.00 -31.53 410.34 -9.33 -40.86 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -8.85 Total: 16.52 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -1.48 Total: 11.40 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.04 Total: -59.66 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.12 Total: -30.93 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.53 -9.33 -40.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358287626.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.132 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds