Wall clock time and date at job start Wed Apr 1 2020 00:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47400 * 2 1 4 4 O 1.42899 * 109.47217 * 180.02562 * 3 2 1 5 5 C 1.42906 * 114.00012 * 178.93330 * 4 3 2 6 6 C 1.52998 * 109.47131 * 58.27692 * 5 4 3 7 7 N 1.46503 * 109.47410 * 59.15481 * 6 5 4 8 8 C 1.34770 * 120.00020 * 183.80172 * 7 6 5 9 9 O 1.21590 * 119.99886 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99981 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00124 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.47300 * 179.97438 * 11 10 8 13 13 O 1.21294 * 119.99737 * 359.97438 * 12 11 10 14 14 N 1.34768 * 119.99905 * 179.97438 * 12 11 10 15 15 C 1.37106 * 120.00087 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99743 * 359.97438 * 15 14 12 17 17 C 1.38948 * 120.00018 * 179.97438 * 15 14 12 18 18 N 1.31406 * 120.00184 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99491 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47456 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47035 * 120.00263 * 19 17 15 22 22 H 1.48498 * 109.47115 * 239.99928 * 19 17 15 23 23 C 1.52995 * 109.47263 * 298.27242 * 5 4 3 24 24 C 1.53005 * 109.46958 * 300.00312 * 23 5 4 25 25 C 1.52991 * 109.47076 * 299.99456 * 24 23 5 26 26 C 1.53005 * 109.47129 * 60.00296 * 25 24 23 27 27 C 1.52996 * 109.46980 * 300.00235 * 26 25 24 28 28 H 1.08993 * 109.47447 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46839 * 300.00332 * 1 2 3 30 30 H 1.08996 * 109.47216 * 59.99664 * 1 2 3 31 31 H 1.08999 * 109.46839 * 239.99668 * 2 1 3 32 32 H 1.09006 * 109.46989 * 119.99863 * 2 1 3 33 33 H 1.08999 * 109.47396 * 60.00009 * 3 2 1 34 34 H 1.09006 * 109.46937 * 299.99894 * 3 2 1 35 35 H 1.09002 * 109.47311 * 179.15991 * 6 5 4 36 36 H 1.09005 * 109.46808 * 299.15852 * 6 5 4 37 37 H 0.96993 * 119.99757 * 3.80679 * 7 6 5 38 38 H 0.96998 * 120.00280 * 359.97438 * 10 8 7 39 39 H 1.09005 * 109.46978 * 299.99535 * 11 10 8 40 40 H 1.08997 * 109.47436 * 59.99289 * 11 10 8 41 41 H 0.97003 * 120.00264 * 359.97438 * 14 12 11 42 42 H 0.97002 * 119.99827 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.47143 * 59.99965 * 23 5 4 44 44 H 1.08998 * 109.47163 * 180.02562 * 23 5 4 45 45 H 1.08998 * 109.47257 * 59.99967 * 24 23 5 46 46 H 1.09009 * 109.46682 * 180.02562 * 24 23 5 47 47 H 1.08998 * 109.47495 * 300.00365 * 25 24 23 48 48 H 1.09001 * 109.47396 * 180.02562 * 25 24 23 49 49 H 1.08991 * 109.47149 * 179.97438 * 26 25 24 50 50 H 1.09003 * 109.46736 * 60.00151 * 26 25 24 51 51 H 1.08998 * 109.46871 * 299.99458 * 27 26 25 52 52 H 1.09000 * 109.46769 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4423 -0.0006 5 6 4.0503 2.7476 -0.0250 6 6 3.5654 3.5446 1.1877 7 7 3.9475 2.8446 2.4167 8 6 3.5573 3.3240 3.6143 9 8 2.8879 4.3372 3.6747 10 7 3.9092 2.6804 4.7449 11 6 3.4847 3.2012 6.0467 12 6 4.0047 2.3043 7.1405 13 8 4.6645 1.3260 6.8601 14 7 3.7365 2.5893 8.4301 15 6 4.2099 1.7736 9.4253 16 1 4.7975 0.9025 9.1756 17 6 3.9339 2.0677 10.7549 18 7 3.2185 3.1274 11.0586 19 14 4.5784 0.9559 12.1106 20 1 5.3498 -0.1616 11.5095 21 1 5.4616 1.7371 13.0133 22 1 3.4368 0.4088 12.8867 23 6 3.6331 3.4679 -1.3087 24 6 4.1181 2.6708 -2.5213 25 6 5.6426 2.5511 -2.4763 26 6 6.0600 1.8308 -1.1925 27 6 5.5750 2.6278 0.0201 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9562 -0.8901 35 1 4.0204 4.5350 1.1772 36 1 2.4805 3.6427 1.1478 37 1 4.4812 2.0362 2.3684 38 1 4.4429 1.8719 4.6967 39 1 3.8812 4.2075 6.1823 40 1 2.3959 3.2311 6.0887 41 1 3.2090 3.3719 8.6544 42 1 3.0255 3.3324 11.9869 43 1 2.5469 3.5532 -1.3408 44 1 4.0768 4.4633 -1.3274 45 1 3.6747 1.6752 -2.5027 46 1 3.8212 3.1842 -3.4359 47 1 6.0860 3.5466 -2.4949 48 1 5.9883 1.9836 -3.3404 49 1 7.1461 1.7451 -1.1607 50 1 5.6166 0.8352 -1.1740 51 1 6.0184 3.6233 0.0015 52 1 5.8727 2.1149 0.9346 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358287626.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:14 Heat of formation + Delta-G solvation = -163.474637 kcal Electronic energy + Delta-G solvation = -30614.684292 eV Core-core repulsion = 26419.207330 eV Total energy + Delta-G solvation = -4195.476962 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59171 -40.73622 -39.89820 -37.22250 -36.27951 -35.75949 -35.26667 -34.26325 -33.37374 -31.77631 -31.55251 -29.25779 -27.24305 -26.80297 -25.91890 -23.78124 -22.42838 -22.05076 -21.77717 -21.35882 -20.59009 -20.11568 -19.60176 -17.71525 -17.46871 -17.33876 -16.86265 -16.69593 -16.49336 -16.43397 -16.03252 -15.87623 -15.61475 -15.21247 -15.06414 -14.93975 -14.72713 -14.27098 -14.04451 -13.95369 -13.66325 -13.55223 -13.47274 -13.32230 -13.18133 -12.95241 -12.89730 -12.68974 -12.50270 -12.44676 -12.11353 -11.99538 -11.83378 -11.81550 -11.58074 -11.47666 -11.38768 -11.21914 -10.86169 -10.56105 -10.44838 -10.35678 -10.10372 -9.82731 -8.51166 -6.01304 1.35038 1.42401 1.54182 1.60663 1.89381 2.10356 2.28455 2.65531 3.05313 3.16015 3.32830 3.52127 3.65704 3.80993 4.03060 4.13862 4.17376 4.20532 4.23288 4.34643 4.39091 4.41667 4.45289 4.47795 4.50429 4.60364 4.61028 4.64720 4.71639 4.76090 4.84804 4.94348 5.05076 5.11360 5.14092 5.23621 5.28116 5.29134 5.30295 5.33107 5.37611 5.38802 5.41158 5.45621 5.61168 5.89837 5.93727 6.30737 6.48018 6.99787 7.03549 7.42285 7.51671 7.94411 8.66025 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016673 B = 0.002052 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.922660 B =13641.339616 C =14147.995706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.056 3.944 4 O -0.374 6.374 5 C 0.117 3.883 6 C 0.115 3.885 7 N -0.725 5.725 8 C 0.705 3.295 9 O -0.632 6.632 10 N -0.724 5.724 11 C 0.142 3.858 12 C 0.434 3.566 13 O -0.624 6.624 14 N -0.560 5.560 15 C -0.336 4.336 16 H 0.086 0.914 17 C -0.012 4.012 18 N -0.916 5.916 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.271 1.271 23 C -0.140 4.140 24 C -0.109 4.109 25 C -0.118 4.118 26 C -0.113 4.113 27 C -0.106 4.106 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.408 0.592 38 H 0.409 0.591 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.399 0.601 42 H 0.280 0.720 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.067 0.933 50 H 0.060 0.940 51 H 0.086 0.914 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.115 -0.586 -28.615 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.020 4.020 4 O -0.294 6.294 5 C 0.077 3.923 6 C -0.010 4.010 7 N -0.381 5.381 8 C 0.404 3.596 9 O -0.514 6.514 10 N -0.382 5.382 11 C 0.014 3.986 12 C 0.221 3.779 13 O -0.512 6.512 14 N -0.195 5.195 15 C -0.465 4.465 16 H 0.104 0.896 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.178 4.178 24 C -0.147 4.147 25 C -0.155 4.155 26 C -0.151 4.151 27 C -0.143 4.143 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.244 0.756 38 H 0.247 0.753 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.105 0.895 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.247 -0.401 -28.544 28.548 hybrid contribution 0.094 -0.407 1.222 1.291 sum -0.154 -0.808 -27.322 27.334 Atomic orbital electron populations 1.21685 0.94114 1.02680 1.02100 1.21413 0.96307 0.95176 1.02723 1.22607 0.81156 0.98113 1.00138 1.87949 1.19689 1.26961 1.94788 1.21727 0.94739 0.83279 0.92533 1.21900 1.00299 0.96203 0.82592 1.44827 1.58534 1.31248 1.03492 1.15931 0.79949 0.82720 0.80956 1.90876 1.45912 1.27620 1.87018 1.44684 1.58525 1.31230 1.03742 1.20579 1.00492 0.96658 0.80889 1.20407 0.85222 0.87995 0.84269 1.90471 1.45640 1.32058 1.83001 1.41841 1.47236 1.25993 1.04442 1.19766 1.32420 1.08128 0.86168 0.89606 1.26139 0.96540 0.98354 1.00199 1.69687 1.38205 1.26827 1.20901 0.84805 0.78167 0.77816 0.77150 1.19449 1.19608 1.19626 1.22057 1.01792 1.00118 0.93804 1.21396 0.96095 1.00252 0.96952 1.21535 0.95614 1.00904 0.97450 1.21428 1.00563 0.99188 0.93871 1.21569 0.91225 1.02016 0.99489 0.91413 0.93366 0.91556 0.90745 0.92562 0.94613 0.91922 0.90872 0.92100 0.75574 0.75348 0.89008 0.89168 0.76690 0.91072 0.91134 0.89662 0.92213 0.90899 0.91473 0.91457 0.91411 0.92167 0.89547 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.12 -1.92 6.30 30.59 0.19 -1.73 16 3 C 0.06 0.97 5.13 71.98 0.37 1.34 16 4 O -0.37 -6.77 8.39 -148.98 -1.25 -8.02 16 5 C 0.12 1.84 0.36 -10.80 0.00 1.84 16 6 C 0.11 2.38 4.13 86.38 0.36 2.73 16 7 N -0.72 -17.83 5.18 -478.53 -2.48 -20.31 16 8 C 0.70 23.15 8.57 179.06 1.53 24.68 16 9 O -0.63 -24.88 16.34 -4.00 -0.07 -24.95 16 10 N -0.72 -24.79 5.53 -482.29 -2.67 -27.46 16 11 C 0.14 5.37 6.15 85.63 0.53 5.90 16 12 C 0.43 20.33 7.85 87.66 0.69 21.02 16 13 O -0.62 -32.60 15.24 -3.07 -0.05 -32.65 16 14 N -0.56 -28.40 5.29 -306.98 -1.62 -30.02 16 15 C -0.34 -18.61 9.68 84.04 0.81 -17.80 16 16 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 17 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 18 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 19 Si 1.00 41.99 29.55 68.60 2.03 44.01 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 C -0.14 -1.72 4.40 30.59 0.13 -1.58 16 24 C -0.11 -1.21 5.78 30.59 0.18 -1.03 16 25 C -0.12 -1.25 5.92 30.59 0.18 -1.07 16 26 C -0.11 -1.47 5.78 30.59 0.18 -1.29 16 27 C -0.11 -1.53 4.78 30.59 0.15 -1.38 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 33 H 0.04 0.74 6.46 -2.39 -0.02 0.73 16 34 H 0.06 0.90 6.40 -2.38 -0.02 0.89 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.40 6.59 -2.38 -0.02 1.38 16 37 H 0.41 8.91 7.17 -92.71 -0.66 8.25 16 38 H 0.41 13.78 7.45 -92.71 -0.69 13.09 16 39 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 40 H 0.09 3.27 8.14 -2.39 -0.02 3.26 16 41 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 42 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.07 0.85 6.55 -2.39 -0.02 0.84 16 44 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 0.79 7.68 -2.39 -0.02 0.77 16 46 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 47 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.06 0.94 7.68 -2.39 -0.02 0.92 16 51 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.06 1.02 6.84 -2.39 -0.02 1.01 16 Total: -1.00 -66.71 410.34 -0.49 -67.20 By element: Atomic # 1 Polarization: 51.87 SS G_CDS: -1.15 Total: 50.73 kcal Atomic # 6 Polarization: 23.63 SS G_CDS: 6.47 Total: 30.11 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -6.49 Total: -126.43 kcal Atomic # 8 Polarization: -64.26 SS G_CDS: -1.36 Total: -65.62 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -66.71 -0.49 -67.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358287626.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.274 kcal (2) G-P(sol) polarization free energy of solvation -66.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds