Wall clock time and date at job start Wed Apr 1 2020 01:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.11287 * 2 1 4 4 O 1.43631 * 110.13314 * 121.71796 * 2 1 3 5 5 C 1.43709 * 108.23556 * 117.43531 * 4 2 1 6 6 C 1.53006 * 110.18637 * 143.92222 * 5 4 2 7 7 C 1.53004 * 110.18341 * 265.68061 * 5 4 2 8 8 N 1.48560 * 105.79058 * 24.83752 * 5 4 2 9 9 C 1.48973 * 102.28315 * 321.89703 * 8 5 4 10 10 H 1.08997 * 110.92827 * 277.23673 * 9 8 5 11 11 C 1.53004 * 110.76720 * 153.90367 * 9 8 5 12 12 N 1.46504 * 109.46932 * 61.74978 * 11 9 8 13 13 C 1.34777 * 119.99858 * 180.02562 * 12 11 9 14 14 O 1.21353 * 119.99795 * 359.97438 * 13 12 11 15 15 C 1.49453 * 119.99937 * 180.27545 * 13 12 11 16 16 O 1.21343 * 119.99742 * 359.71852 * 15 13 12 17 17 N 1.34775 * 119.99799 * 179.72511 * 15 13 12 18 18 C 1.46498 * 119.99689 * 180.02562 * 17 15 13 19 19 C 1.53003 * 109.46778 * 179.97438 * 18 17 15 20 20 C 1.52996 * 109.47207 * 299.99495 * 19 18 17 21 21 C 1.53000 * 109.47308 * 59.99821 * 19 18 17 22 22 C 1.50702 * 109.46878 * 179.97438 * 19 18 17 23 23 H 1.08002 * 120.00299 * 359.97438 * 22 19 18 24 24 C 1.37877 * 120.00159 * 179.97438 * 22 19 18 25 25 N 1.31514 * 119.99981 * 359.97438 * 24 22 19 26 26 Si 1.86796 * 120.00173 * 179.97438 * 24 22 19 27 27 H 1.48504 * 109.47153 * 90.00282 * 26 24 22 28 28 H 1.48502 * 109.47465 * 209.99785 * 26 24 22 29 29 H 1.48496 * 109.47402 * 329.99928 * 26 24 22 30 30 H 1.09004 * 109.46822 * 181.64245 * 1 2 3 31 31 H 1.09004 * 109.47103 * 301.63980 * 1 2 3 32 32 H 1.09001 * 109.47107 * 61.64047 * 1 2 3 33 33 H 1.08992 * 109.47331 * 61.45268 * 6 5 4 34 34 H 1.09000 * 109.46775 * 181.45693 * 6 5 4 35 35 H 1.09001 * 109.46350 * 301.45128 * 6 5 4 36 36 H 1.09005 * 109.46869 * 58.54846 * 7 5 4 37 37 H 1.08997 * 109.46958 * 178.54565 * 7 5 4 38 38 H 1.09003 * 109.47279 * 298.54527 * 7 5 4 39 39 H 1.00905 * 110.99425 * 203.44154 * 8 5 4 40 40 H 1.08992 * 109.47264 * 301.74984 * 11 9 8 41 41 H 1.08997 * 109.47093 * 181.74523 * 11 9 8 42 42 H 0.97000 * 119.99825 * 359.97438 * 12 11 9 43 43 H 0.97000 * 119.99929 * 359.97438 * 17 15 13 44 44 H 1.08998 * 109.46797 * 299.99200 * 18 17 15 45 45 H 1.08994 * 109.47567 * 59.99775 * 18 17 15 46 46 H 1.09003 * 109.46851 * 60.00185 * 20 19 18 47 47 H 1.09001 * 109.47551 * 180.02562 * 20 19 18 48 48 H 1.09003 * 109.47532 * 300.00110 * 20 19 18 49 49 H 1.09004 * 109.47084 * 60.00333 * 21 19 18 50 50 H 1.09001 * 109.47192 * 179.97438 * 21 19 18 51 51 H 1.08994 * 109.47175 * 299.99761 * 21 19 18 52 52 H 0.96995 * 120.00593 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9048 1.0235 0.0000 4 8 2.0244 -0.7090 1.1471 5 6 2.7696 -1.8476 0.6853 6 6 3.9705 -2.0989 1.5996 7 6 1.8708 -3.0851 0.6433 8 7 3.2312 -1.5006 -0.6835 9 6 2.0614 -0.7605 -1.2343 10 1 1.3092 -1.4504 -1.6167 11 6 2.5027 0.2171 -2.3254 12 7 3.1105 -0.5273 -3.4312 13 6 3.5764 0.1311 -4.5110 14 8 3.4921 1.3403 -4.5674 15 6 4.1909 -0.6288 -5.6418 16 8 4.2748 -1.8380 -5.5855 17 7 4.6517 0.0291 -6.7240 18 6 5.2535 -0.7157 -7.8327 19 6 5.6899 0.2615 -8.9262 20 6 4.4720 1.0359 -9.4338 21 6 6.7157 1.2420 -8.3542 22 6 6.3095 -0.5047 -10.0664 23 1 6.3849 -1.5809 -10.0161 24 6 6.7802 0.1682 -11.1740 25 7 6.6879 1.4786 -11.2356 26 14 7.5488 -0.7814 -12.5870 27 1 6.4955 -1.1500 -13.5668 28 1 8.5709 0.0646 -13.2541 29 1 8.1912 -2.0138 -12.0638 30 1 -0.3633 -1.0273 0.0295 31 1 -0.3633 0.5391 0.8749 32 1 -0.3633 0.4881 -0.9043 33 1 3.6199 -2.3143 2.6089 34 1 4.5414 -2.9482 1.2242 35 1 4.6055 -1.2132 1.6167 36 1 1.0228 -2.8961 -0.0151 37 1 2.4402 -3.9351 0.2673 38 1 1.5091 -3.3058 1.6476 39 1 3.4198 -2.3321 -1.2231 40 1 3.2311 0.9159 -1.9141 41 1 1.6366 0.7684 -2.6912 42 1 3.1782 -1.4939 -3.3859 43 1 4.5843 0.9957 -6.7691 44 1 6.1210 -1.2678 -7.4710 45 1 4.5226 -1.4139 -8.2405 46 1 4.0242 1.5901 -8.6088 47 1 4.7828 1.7318 -10.2131 48 1 3.7412 0.3374 -9.8413 49 1 7.5835 0.6902 -7.9926 50 1 7.0270 1.9378 -9.1333 51 1 6.2680 1.7962 -7.5293 52 1 7.0187 1.9521 -12.0149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418968087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:32 Heat of formation + Delta-G solvation = -115.903278 kcal Electronic energy + Delta-G solvation = -30468.939003 eV Core-core repulsion = 26275.524890 eV Total energy + Delta-G solvation = -4193.414113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.98670 -40.26122 -38.36702 -36.50094 -35.71516 -34.43189 -33.49116 -32.88441 -30.89754 -30.28713 -28.37924 -27.77082 -26.20832 -25.72785 -25.28132 -24.08339 -22.57932 -21.56083 -21.20271 -20.03061 -19.00516 -18.30461 -17.10773 -16.83724 -16.60257 -15.91551 -15.81086 -15.52626 -15.19267 -15.12584 -14.84382 -14.46907 -14.24257 -13.88876 -13.63221 -13.51413 -13.42058 -13.16945 -12.94306 -12.78398 -12.74922 -12.70328 -12.39945 -12.28618 -12.22948 -11.96131 -11.71210 -11.51074 -11.40667 -11.34727 -11.18353 -10.88826 -10.71276 -10.40615 -10.27830 -10.20771 -9.65947 -9.56230 -9.38054 -9.28738 -9.22680 -8.81029 -8.61398 -8.37874 -6.03247 -4.14075 1.64405 2.50399 3.16053 3.27412 3.34697 3.37933 3.41356 3.48056 3.81787 4.13526 4.26311 4.34085 4.38678 4.46442 4.56717 4.70023 4.80395 4.88247 4.97743 5.03019 5.16128 5.23324 5.23382 5.34814 5.36241 5.41420 5.48524 5.57057 5.63033 5.76107 5.91900 6.07628 6.10353 6.22472 6.46181 6.48848 6.61789 6.72313 6.81281 6.84637 6.93265 6.99721 7.05270 7.32600 7.54485 7.65121 7.69855 7.95188 7.99544 8.11906 8.31296 8.40173 8.86082 9.51778 10.98142 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026604 B = 0.001895 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.233134 B =14770.938511 C =15235.429231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.086 3.914 3 H 0.094 0.906 4 O -0.360 6.360 5 C 0.251 3.749 6 C -0.133 4.133 7 C -0.195 4.195 8 N -0.658 5.658 9 C 0.022 3.978 10 H 0.074 0.926 11 C 0.138 3.862 12 N -0.702 5.702 13 C 0.509 3.491 14 O -0.519 6.519 15 C 0.496 3.504 16 O -0.537 6.537 17 N -0.679 5.679 18 C 0.128 3.872 19 C 0.055 3.945 20 C -0.134 4.134 21 C -0.134 4.134 22 C -0.507 4.507 23 H 0.058 0.942 24 C 0.066 3.934 25 N -0.884 5.884 26 Si 0.895 3.105 27 H -0.281 1.281 28 H -0.287 1.287 29 H -0.274 1.274 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.353 0.647 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.409 0.591 43 H 0.411 0.589 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.008 0.992 47 H 0.087 0.913 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.087 0.913 51 H 0.009 0.991 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.264 -4.863 23.650 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.028 3.972 3 H 0.112 0.888 4 O -0.278 6.278 5 C 0.122 3.878 6 C -0.190 4.190 7 C -0.255 4.255 8 N -0.294 5.294 9 C -0.089 4.089 10 H 0.092 0.908 11 C 0.014 3.986 12 N -0.356 5.356 13 C 0.290 3.710 14 O -0.394 6.394 15 C 0.276 3.724 16 O -0.415 6.415 17 N -0.331 5.331 18 C 0.006 3.994 19 C 0.055 3.945 20 C -0.191 4.191 21 C -0.191 4.191 22 C -0.545 4.545 23 H 0.076 0.924 24 C -0.136 4.136 25 N -0.522 5.522 26 Si 0.723 3.277 27 H -0.207 1.207 28 H -0.213 1.213 29 H -0.199 1.199 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.171 0.829 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.245 0.755 43 H 0.248 0.752 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.027 0.973 47 H 0.106 0.894 48 H 0.046 0.954 49 H 0.047 0.953 50 H 0.106 0.894 51 H 0.028 0.972 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.771 -4.030 23.886 26.510 hybrid contribution -0.305 -1.345 -1.169 1.808 sum -11.075 -5.376 22.716 25.838 Atomic orbital electron populations 1.22198 0.94074 1.02837 1.03135 1.22799 0.94288 0.96836 0.83322 0.88825 1.88759 1.70237 1.39699 1.29065 1.23048 0.90385 0.85896 0.88461 1.21699 0.95938 1.02942 0.98460 1.22813 1.00659 0.98177 1.03820 1.64576 1.35200 1.26479 1.03120 1.23567 0.92827 0.96787 0.95694 0.90782 1.21330 0.98801 0.93663 0.84835 1.45564 1.60550 1.11598 1.17862 1.20463 0.79113 0.87742 0.83688 1.90763 1.55058 1.13703 1.79886 1.19936 0.80807 0.87682 0.84017 1.90714 1.56997 1.13513 1.80300 1.46222 1.57184 1.12385 1.17301 1.21944 0.96538 0.95419 0.85468 1.18388 0.93023 0.92006 0.91116 1.21857 0.96819 1.00289 1.00159 1.21855 0.98261 1.00127 0.98888 1.20941 1.39229 0.93208 1.01157 0.92366 1.24889 0.95591 0.94898 0.98173 1.69804 1.46572 1.06460 1.29398 0.86553 0.79033 0.79854 0.82303 1.20723 1.21261 1.19914 0.92155 0.91247 0.90871 0.91487 0.91108 0.90919 0.92170 0.91014 0.90778 0.82924 0.89832 0.90263 0.75499 0.75167 0.91978 0.92021 0.97263 0.89423 0.95371 0.95330 0.89441 0.97244 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.48 37.16 0.35 -0.60 16 2 C 0.09 0.64 3.90 -25.99 -0.10 0.53 16 3 H 0.09 0.70 7.80 -51.93 -0.41 0.29 16 4 O -0.36 -3.26 10.53 -35.23 -0.37 -3.63 16 5 C 0.25 1.86 1.47 -66.79 -0.10 1.76 16 6 C -0.13 -0.90 9.29 37.16 0.35 -0.56 16 7 C -0.20 -1.13 8.86 37.16 0.33 -0.80 16 8 N -0.66 -4.97 6.85 -94.05 -0.64 -5.62 16 9 C 0.02 0.15 2.44 -65.82 -0.16 -0.01 16 10 H 0.07 0.46 7.25 -51.93 -0.38 0.08 16 11 C 0.14 1.24 5.30 -4.04 -0.02 1.22 16 12 N -0.70 -7.79 5.47 -60.73 -0.33 -8.12 16 13 C 0.51 7.60 7.89 -11.58 -0.09 7.51 16 14 O -0.52 -8.82 16.48 5.49 0.09 -8.73 16 15 C 0.50 8.54 7.89 -11.58 -0.09 8.45 16 16 O -0.54 -10.00 16.48 5.50 0.09 -9.91 16 17 N -0.68 -12.50 4.95 -60.73 -0.30 -12.80 16 18 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16 19 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 20 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 21 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 22 C -0.51 -13.07 8.01 -34.44 -0.28 -13.35 16 23 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 24 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 25 N -0.88 -23.50 9.35 55.43 0.52 -22.98 16 26 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 30 H 0.06 0.34 7.87 -51.93 -0.41 -0.06 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.35 6.93 -51.93 -0.36 -0.01 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.35 2.28 8.37 -39.29 -0.33 1.95 16 40 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.41 4.06 7.64 -40.82 -0.31 3.75 16 43 H 0.41 7.47 5.64 -40.82 -0.23 7.24 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 47 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 48 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 51 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 52 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 411.02 15.07 6.19 6.19 Total: -1.00 -29.12 411.02 -7.98 -37.10 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -8.80 Total: 8.84 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 0.60 Total: 4.14 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.76 Total: -49.52 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.19 Total: -22.27 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.12 -7.98 -37.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418968087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.805 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds