Wall clock time and date at job start Wed Apr 1 2020 01:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.11119 * 2 1 4 4 O 1.43633 * 110.13096 * 121.64609 * 2 1 3 5 5 C 1.43706 * 108.23733 * 120.93175 * 4 2 1 6 6 C 1.53006 * 110.18145 * 94.23929 * 5 4 2 7 7 C 1.52996 * 110.18566 * 216.00028 * 5 4 2 8 8 N 1.48563 * 105.85917 * 335.12364 * 5 4 2 9 9 C 1.49162 * 102.18950 * 38.09477 * 8 5 4 10 10 H 1.08996 * 110.76222 * 82.71302 * 9 8 5 11 11 C 1.53001 * 110.92117 * 206.03107 * 9 8 5 12 12 N 1.46500 * 109.47189 * 298.37030 * 11 9 8 13 13 C 1.34771 * 120.00125 * 180.02562 * 12 11 9 14 14 O 1.21352 * 120.00328 * 359.97438 * 13 12 11 15 15 C 1.49455 * 119.99825 * 179.97438 * 13 12 11 16 16 O 1.21342 * 120.00283 * 0.02562 * 15 13 12 17 17 N 1.34780 * 119.99937 * 179.97438 * 15 13 12 18 18 C 1.46499 * 120.00239 * 179.97438 * 17 15 13 19 19 C 1.52995 * 109.47426 * 180.02562 * 18 17 15 20 20 C 1.52999 * 109.47648 * 300.00783 * 19 18 17 21 21 C 1.53004 * 109.47059 * 60.00679 * 19 18 17 22 22 C 1.50697 * 109.47174 * 180.02562 * 19 18 17 23 23 H 1.07994 * 120.00596 * 0.02562 * 22 19 18 24 24 C 1.37886 * 119.99787 * 180.02562 * 22 19 18 25 25 N 1.31512 * 119.99950 * 359.97438 * 24 22 19 26 26 Si 1.86799 * 119.99855 * 180.02562 * 24 22 19 27 27 H 1.48498 * 109.47243 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47137 * 119.99455 * 26 24 22 29 29 H 1.48491 * 109.47201 * 239.99810 * 26 24 22 30 30 H 1.09000 * 109.47345 * 299.80919 * 1 2 3 31 31 H 1.09004 * 109.47081 * 59.81441 * 1 2 3 32 32 H 1.09002 * 109.47545 * 179.80989 * 1 2 3 33 33 H 1.09001 * 109.47002 * 182.47699 * 6 5 4 34 34 H 1.08993 * 109.46955 * 302.48136 * 6 5 4 35 35 H 1.09000 * 109.47050 * 62.47965 * 6 5 4 36 36 H 1.08998 * 109.47390 * 297.52237 * 7 5 4 37 37 H 1.08996 * 109.47137 * 57.52687 * 7 5 4 38 38 H 1.09008 * 109.47103 * 177.52662 * 7 5 4 39 39 H 1.00894 * 110.99881 * 156.59124 * 8 5 4 40 40 H 1.09003 * 109.47048 * 58.36425 * 11 9 8 41 41 H 1.08997 * 109.47214 * 178.36612 * 11 9 8 42 42 H 0.97007 * 120.00010 * 359.97438 * 12 11 9 43 43 H 0.97002 * 120.00051 * 0.02562 * 17 15 13 44 44 H 1.08999 * 109.47511 * 300.01328 * 18 17 15 45 45 H 1.09004 * 109.46419 * 60.00555 * 18 17 15 46 46 H 1.09006 * 109.46973 * 59.99529 * 20 19 18 47 47 H 1.09000 * 109.47701 * 179.97438 * 20 19 18 48 48 H 1.09004 * 109.46867 * 300.00047 * 20 19 18 49 49 H 1.08999 * 109.47001 * 59.99313 * 21 19 18 50 50 H 1.08992 * 109.47846 * 180.02562 * 21 19 18 51 51 H 1.09006 * 109.46928 * 300.00083 * 21 19 18 52 52 H 0.97005 * 119.99934 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9048 1.0235 0.0000 4 8 2.0244 -0.7076 1.1481 5 6 2.8378 -1.7991 0.6877 6 6 4.3088 -1.3800 0.6455 7 6 2.6612 -3.0120 1.6034 8 7 2.3555 -2.1157 -0.6813 9 6 2.0629 -0.7612 -1.2332 10 1 2.9716 -0.2940 -1.6128 11 6 0.9961 -0.8358 -2.3274 12 7 1.4869 -1.6631 -3.4324 13 6 0.7115 -1.8706 -4.5150 14 8 -0.3936 -1.3725 -4.5743 15 6 1.2125 -2.7140 -5.6424 16 8 2.3172 -3.2124 -5.5830 17 7 0.4368 -2.9220 -6.7248 18 6 0.9281 -3.7483 -7.8303 19 6 -0.1385 -3.8227 -8.9246 20 6 -1.4145 -4.4430 -8.3520 21 6 -0.4423 -2.4134 -9.4374 22 6 0.3666 -4.6732 -10.0615 23 1 1.3499 -5.1167 -10.0086 24 6 -0.4266 -4.8851 -11.1692 25 7 -1.6242 -4.3454 -11.2334 26 14 0.1993 -5.9400 -12.5781 27 1 1.5662 -6.4270 -12.2626 28 1 -0.7081 -7.0999 -12.7690 29 1 0.2375 -5.1313 -13.8229 30 1 -0.3634 0.5109 0.8917 31 1 -0.3633 0.5167 -0.8883 32 1 -0.3634 -1.0276 -0.0034 33 1 4.9093 -2.2009 0.2535 34 1 4.4198 -0.5084 0.0006 35 1 4.6450 -1.1322 1.6523 36 1 3.0007 -2.7611 2.6083 37 1 1.6086 -3.2931 1.6350 38 1 3.2486 -3.8460 1.2191 39 1 3.0723 -2.5795 -1.2189 40 1 0.0870 -1.2774 -1.9190 41 1 0.7799 0.1679 -2.6932 42 1 2.3704 -2.0609 -3.3852 43 1 -0.4465 -2.5239 -6.7723 44 1 1.8369 -3.3062 -8.2385 45 1 1.1449 -4.7521 -7.4649 46 1 -1.7800 -3.8281 -7.5296 47 1 -2.1746 -4.4956 -9.1316 48 1 -1.1981 -5.4470 -7.9868 49 1 0.4667 -1.9714 -9.8453 50 1 -1.2024 -2.4662 -10.2167 51 1 -0.8078 -1.7985 -8.6149 52 1 -2.1823 -4.4948 -12.0126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418968088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:35 Heat of formation + Delta-G solvation = -135.003692 kcal Electronic energy + Delta-G solvation = -30593.062230 eV Core-core repulsion = 26398.819861 eV Total energy + Delta-G solvation = -4194.242369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.85106 -41.29984 -39.69053 -38.18237 -36.72285 -35.08874 -35.00278 -33.81778 -32.73336 -30.63889 -28.95079 -28.33776 -27.64477 -27.58104 -27.11076 -25.43660 -24.07741 -21.95585 -21.61479 -21.11124 -20.67677 -19.51717 -18.17440 -17.96761 -17.69688 -17.12894 -16.93068 -16.66340 -16.47023 -16.27318 -15.88036 -15.73313 -15.38595 -15.02611 -14.75903 -14.60141 -14.43908 -14.11278 -14.01791 -13.81056 -13.70802 -13.36563 -13.21282 -13.19295 -13.13301 -12.88245 -12.77318 -12.72539 -12.70616 -12.59945 -12.55430 -12.27586 -12.25144 -12.11535 -11.88404 -11.50193 -11.29398 -10.80245 -10.75223 -10.62116 -10.41023 -10.31966 -10.10467 -9.81947 -8.01093 -6.17347 0.36854 1.34182 1.43462 1.48000 1.57001 2.16837 2.45320 2.58308 2.71576 2.90965 3.22839 3.43524 3.54135 3.65361 3.87279 3.91195 4.01847 4.25591 4.35419 4.39880 4.41045 4.48208 4.52883 4.67104 4.68629 4.72898 4.76238 4.81284 4.86452 4.93482 4.97822 5.04642 5.06254 5.06618 5.12996 5.17881 5.18481 5.22930 5.30841 5.38298 5.48923 5.65416 5.68432 5.93389 5.97955 6.11852 6.19687 6.21613 6.39291 6.41991 6.74326 6.87332 6.97836 7.50579 8.98297 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026367 B = 0.001934 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.664063 B =14477.739302 C =15022.595181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.085 3.915 3 H 0.102 0.898 4 O -0.380 6.380 5 C 0.245 3.755 6 C -0.190 4.190 7 C -0.132 4.132 8 N -0.668 5.668 9 C 0.029 3.971 10 H 0.090 0.910 11 C 0.134 3.866 12 N -0.682 5.682 13 C 0.514 3.486 14 O -0.541 6.541 15 C 0.498 3.502 16 O -0.550 6.550 17 N -0.682 5.682 18 C 0.144 3.856 19 C 0.049 3.951 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.523 4.523 23 H 0.052 0.948 24 C 0.025 3.975 25 N -0.901 5.901 26 Si 0.948 3.052 27 H -0.271 1.271 28 H -0.284 1.284 29 H -0.283 1.283 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.359 0.641 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.417 0.583 43 H 0.413 0.587 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.029 0.971 47 H 0.063 0.937 48 H 0.023 0.977 49 H 0.024 0.976 50 H 0.063 0.937 51 H 0.030 0.970 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 9.092 24.691 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.120 0.880 4 O -0.298 6.298 5 C 0.117 3.883 6 C -0.249 4.249 7 C -0.189 4.189 8 N -0.305 5.305 9 C -0.081 4.081 10 H 0.108 0.892 11 C 0.011 3.989 12 N -0.335 5.335 13 C 0.294 3.706 14 O -0.419 6.419 15 C 0.278 3.722 16 O -0.430 6.430 17 N -0.333 5.333 18 C 0.021 3.979 19 C 0.048 3.952 20 C -0.182 4.182 21 C -0.181 4.181 22 C -0.562 4.562 23 H 0.070 0.930 24 C -0.175 4.175 25 N -0.540 5.540 26 Si 0.775 3.225 27 H -0.196 1.196 28 H -0.210 1.210 29 H -0.209 1.209 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.178 0.822 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.253 0.747 43 H 0.251 0.749 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.082 0.918 48 H 0.042 0.958 49 H 0.043 0.957 50 H 0.081 0.919 51 H 0.049 0.951 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.023 8.922 24.964 27.698 hybrid contribution 1.040 -0.365 -1.392 1.776 sum 9.064 8.557 23.571 26.664 Atomic orbital electron populations 1.22169 0.93956 1.02600 1.03225 1.22881 0.95504 0.95977 0.82943 0.87994 1.88746 1.67625 1.43409 1.30052 1.23183 0.89527 0.87259 0.88294 1.22739 0.95319 1.02807 1.04007 1.21702 1.02840 0.95532 0.98862 1.64561 1.45338 1.17207 1.03356 1.23476 0.98727 0.90937 0.94986 0.89170 1.21681 0.97345 0.95595 0.84266 1.45562 1.20123 1.50865 1.16918 1.19954 0.85216 0.81526 0.83856 1.90761 1.20558 1.50206 1.80331 1.20339 0.85424 0.82284 0.84134 1.90705 1.20669 1.51068 1.80516 1.46071 1.20084 1.49767 1.17422 1.21536 0.97779 0.92970 0.85632 1.18396 0.91505 0.93975 0.91300 1.21708 1.00067 0.97697 0.98702 1.21701 1.00391 0.95921 1.00118 1.21262 1.01648 1.30879 1.02389 0.93019 1.25512 0.95109 0.96751 1.00129 1.69935 1.09535 1.44753 1.29757 0.85652 0.78425 0.78729 0.79655 1.19602 1.20972 1.20943 0.91581 0.89907 0.92734 0.89813 0.91978 0.90784 0.91037 0.92586 0.90044 0.82234 0.90249 0.89284 0.74652 0.74940 0.92656 0.92757 0.95168 0.91834 0.95781 0.95708 0.91853 0.95130 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.28 71.98 0.60 -1.59 16 2 C 0.09 1.10 4.24 31.07 0.13 1.23 16 3 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 4 O -0.38 -6.33 10.53 -148.98 -1.57 -7.89 16 5 C 0.25 3.21 1.47 44.59 0.07 3.28 16 6 C -0.19 -1.77 8.84 71.98 0.64 -1.13 16 7 C -0.13 -1.65 9.29 71.98 0.67 -0.98 16 8 N -0.67 -8.76 6.87 -549.66 -3.77 -12.54 16 9 C 0.03 0.35 2.83 44.95 0.13 0.47 16 10 H 0.09 0.80 7.54 -2.39 -0.02 0.78 16 11 C 0.13 2.14 4.21 86.38 0.36 2.50 16 12 N -0.68 -13.73 5.47 -464.41 -2.54 -16.26 16 13 C 0.51 14.49 7.89 87.27 0.69 15.18 16 14 O -0.54 -17.50 16.48 -3.25 -0.05 -17.55 16 15 C 0.50 16.46 7.89 87.27 0.69 17.15 16 16 O -0.55 -19.76 16.48 -3.22 -0.05 -19.81 16 17 N -0.68 -24.33 4.95 -464.42 -2.30 -26.63 16 18 C 0.14 5.88 4.50 86.38 0.39 6.27 16 19 C 0.05 2.25 0.50 -52.93 -0.03 2.22 16 20 C -0.12 -5.62 8.08 71.98 0.58 -5.04 16 21 C -0.12 -5.57 8.08 71.98 0.58 -4.99 16 22 C -0.52 -27.03 8.01 25.60 0.21 -26.83 16 23 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 24 C 0.02 1.28 5.15 84.66 0.44 1.72 16 25 N -0.90 -48.17 9.35 21.45 0.20 -47.97 16 26 Si 0.95 42.10 29.54 68.60 2.03 44.12 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 29 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.95 6.92 -2.38 -0.02 0.93 16 32 H 0.05 0.92 7.46 -2.39 -0.02 0.90 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.56 7.22 -2.39 -0.02 0.54 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.36 3.80 8.38 -89.70 -0.75 3.05 16 40 H 0.08 1.51 6.32 -2.39 -0.02 1.49 16 41 H 0.09 1.31 7.86 -2.39 -0.02 1.29 16 42 H 0.42 7.29 7.65 -92.70 -0.71 6.59 16 43 H 0.41 14.47 5.63 -92.71 -0.52 13.95 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.03 1.20 6.86 -2.38 -0.02 1.18 16 47 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 48 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 51 H 0.03 1.20 6.86 -2.38 -0.02 1.19 16 52 H 0.26 13.36 8.31 -92.70 -0.77 12.59 16 Total: -1.00 -61.13 406.71 -2.97 -64.09 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -1.03 Total: 30.96 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 6.13 Total: 9.48 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -8.41 Total: -103.40 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -1.68 Total: -45.26 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -61.13 -2.97 -64.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418968088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.910 kcal (2) G-P(sol) polarization free energy of solvation -61.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds