Wall clock time and date at job start Wed Apr 1 2020 01:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 110.59619 * 2 1 4 4 O 1.43975 * 110.54293 * 237.23743 * 2 1 3 5 5 C 1.43293 * 108.34591 * 218.77499 * 4 2 1 6 6 C 1.52999 * 109.70434 * 120.03954 * 5 4 2 7 7 C 1.53001 * 109.69863 * 240.54664 * 5 4 2 8 8 N 1.47949 * 108.35383 * 0.28841 * 5 4 2 9 9 C 1.48941 * 103.75380 * 23.09840 * 8 5 4 10 10 H 1.09005 * 111.03366 * 82.73589 * 9 8 5 11 11 C 1.53004 * 111.03209 * 206.65698 * 9 8 5 12 12 N 1.46503 * 109.46754 * 297.05369 * 11 9 8 13 13 C 1.34773 * 119.99635 * 179.97438 * 12 11 9 14 14 O 1.21345 * 120.00558 * 0.02562 * 13 12 11 15 15 C 1.49458 * 119.99763 * 179.97438 * 13 12 11 16 16 O 1.21348 * 120.00154 * 0.02562 * 15 13 12 17 17 N 1.34782 * 119.99646 * 180.02562 * 15 13 12 18 18 C 1.46503 * 119.99518 * 180.02562 * 17 15 13 19 19 C 1.52999 * 109.46771 * 179.97438 * 18 17 15 20 20 C 1.52993 * 109.47593 * 300.00569 * 19 18 17 21 21 C 1.53005 * 109.46836 * 60.00647 * 19 18 17 22 22 C 1.50704 * 109.46808 * 180.02562 * 19 18 17 23 23 H 1.07996 * 119.99887 * 0.02562 * 22 19 18 24 24 C 1.37876 * 119.99628 * 180.02562 * 22 19 18 25 25 N 1.31517 * 120.00505 * 359.97438 * 24 22 19 26 26 Si 1.86802 * 119.99802 * 180.02562 * 24 22 19 27 27 H 1.48505 * 109.47134 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47187 * 119.99705 * 26 24 22 29 29 H 1.48500 * 109.47266 * 239.99565 * 26 24 22 30 30 H 1.09002 * 109.46969 * 181.31146 * 1 2 3 31 31 H 1.08994 * 109.46827 * 301.30939 * 1 2 3 32 32 H 1.09000 * 109.46758 * 61.31123 * 1 2 3 33 33 H 1.09003 * 109.47273 * 61.45184 * 6 5 4 34 34 H 1.09001 * 109.46875 * 181.44852 * 6 5 4 35 35 H 1.08996 * 109.47203 * 301.45000 * 6 5 4 36 36 H 1.08997 * 109.47317 * 58.55132 * 7 5 4 37 37 H 1.09010 * 109.46836 * 178.54559 * 7 5 4 38 38 H 1.08997 * 109.47402 * 298.54709 * 7 5 4 39 39 H 1.00900 * 110.99788 * 142.38015 * 8 5 4 40 40 H 1.08996 * 109.46949 * 57.05557 * 11 9 8 41 41 H 1.08998 * 109.47061 * 177.05554 * 11 9 8 42 42 H 0.96994 * 120.00172 * 0.02562 * 12 11 9 43 43 H 0.96997 * 120.00466 * 0.02562 * 17 15 13 44 44 H 1.08997 * 109.47433 * 300.00609 * 18 17 15 45 45 H 1.09005 * 109.46948 * 60.00188 * 18 17 15 46 46 H 1.08996 * 109.47395 * 59.99792 * 20 19 18 47 47 H 1.09003 * 109.47084 * 180.02562 * 20 19 18 48 48 H 1.09005 * 109.46893 * 299.99999 * 20 19 18 49 49 H 1.08996 * 109.47298 * 59.99764 * 21 19 18 50 50 H 1.09003 * 109.46974 * 179.97438 * 21 19 18 51 51 H 1.08996 * 109.46895 * 299.99439 * 21 19 18 52 52 H 0.96991 * 120.00203 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9135 1.0203 0.0000 4 8 2.0353 -0.7296 -1.1337 5 6 3.1865 -1.4731 -0.7150 6 6 2.9442 -2.9674 -0.9367 7 6 4.4096 -1.0255 -1.5180 8 7 3.4116 -1.2122 0.7238 9 6 2.0737 -0.7850 1.2197 10 1 1.4451 -1.6475 1.4416 11 6 2.2062 0.1242 2.4431 12 7 2.8326 -0.6197 3.5388 13 6 3.0520 -0.0165 4.7239 14 8 2.7303 1.1425 4.8836 15 6 3.6905 -0.7756 5.8419 16 8 4.0118 -1.9349 5.6824 17 7 3.9093 -0.1725 7.0272 18 6 4.5357 -0.9165 8.1229 19 6 4.6688 -0.0071 9.3460 20 6 5.5350 1.2028 8.9903 21 6 3.2813 0.4692 9.7808 22 6 5.3137 -0.7721 10.4729 23 1 5.6004 -1.8036 10.3307 24 6 5.5378 -0.1552 11.6854 25 7 5.1892 1.1011 11.8585 26 14 6.3378 -1.1032 13.0821 27 1 6.6328 -2.4883 12.6350 28 1 7.6014 -0.4305 13.4770 29 1 5.4149 -1.1448 14.2447 30 1 -0.3633 -1.0274 0.0235 31 1 -0.3633 0.5340 0.8780 32 1 -0.3633 0.4933 -0.9015 33 1 2.7854 -3.1562 -1.9985 34 1 3.8117 -3.5310 -0.5933 35 1 2.0629 -3.2796 -0.3764 36 1 4.5699 0.0426 -1.3707 37 1 5.2878 -1.5749 -1.1787 38 1 4.2424 -1.2253 -2.5764 39 1 3.7236 -2.0463 1.1980 40 1 2.8231 0.9863 2.1899 41 1 1.2176 0.4632 2.7527 42 1 3.0901 -1.5461 3.4111 43 1 3.6522 0.7540 7.1548 44 1 3.9189 -1.7787 8.3760 45 1 5.5244 -1.2554 7.8133 46 1 5.0690 1.7563 8.1751 47 1 5.6301 1.8504 9.8619 48 1 6.5235 0.8635 8.6806 49 1 2.6642 -0.3927 10.0342 50 1 3.3760 1.1167 10.6525 51 1 2.8153 1.0227 8.9656 52 1 5.3471 1.5352 12.7113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418968089.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:39 Heat of formation + Delta-G solvation = -116.435144 kcal Electronic energy + Delta-G solvation = -30435.982069 eV Core-core repulsion = 26242.544893 eV Total energy + Delta-G solvation = -4193.437176 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.92506 -40.25415 -38.37128 -36.50346 -35.74085 -34.51658 -33.50253 -32.90179 -30.89946 -30.19906 -28.34658 -27.74386 -26.19646 -25.73049 -25.28154 -24.08663 -22.61344 -21.47670 -21.22014 -20.05747 -19.00851 -18.30043 -17.36157 -16.71582 -16.63762 -15.89423 -15.80282 -15.41031 -15.24939 -14.91501 -14.83966 -14.51294 -14.14299 -14.00757 -13.91148 -13.50482 -13.35876 -13.17570 -12.94638 -12.73058 -12.68819 -12.57027 -12.40629 -12.23349 -12.22528 -11.94936 -11.77101 -11.54508 -11.41193 -11.37966 -11.19336 -10.90309 -10.68243 -10.41147 -10.23008 -10.20980 -9.66303 -9.56364 -9.38197 -9.28148 -9.22256 -8.80361 -8.61649 -8.38447 -6.03646 -4.14377 1.64062 2.50074 3.08771 3.26162 3.34935 3.38821 3.43359 3.48814 3.81523 4.16723 4.29258 4.34814 4.38529 4.49408 4.60208 4.72415 4.80264 4.90952 4.98508 5.03770 5.20124 5.23037 5.28609 5.38077 5.38785 5.41577 5.50814 5.58846 5.59578 5.78070 5.90560 6.07069 6.10189 6.22267 6.45972 6.58410 6.61598 6.70226 6.81059 6.84374 6.93033 6.99475 7.04950 7.32394 7.54230 7.64893 7.69662 7.94919 7.99296 8.11728 8.31057 8.39969 8.86096 9.51581 10.97783 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.001899 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.906824 B =14738.666089 C =15236.357510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.088 3.912 3 H 0.086 0.914 4 O -0.369 6.369 5 C 0.254 3.746 6 C -0.184 4.184 7 C -0.139 4.139 8 N -0.665 5.665 9 C 0.023 3.977 10 H 0.075 0.925 11 C 0.139 3.861 12 N -0.702 5.702 13 C 0.509 3.491 14 O -0.519 6.519 15 C 0.496 3.504 16 O -0.537 6.537 17 N -0.679 5.679 18 C 0.128 3.872 19 C 0.055 3.945 20 C -0.134 4.134 21 C -0.133 4.133 22 C -0.506 4.506 23 H 0.059 0.941 24 C 0.066 3.934 25 N -0.884 5.884 26 Si 0.894 3.106 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.285 1.285 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.353 0.647 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.410 0.590 43 H 0.411 0.589 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.009 0.991 47 H 0.087 0.913 48 H 0.027 0.973 49 H 0.027 0.973 50 H 0.087 0.913 51 H 0.008 0.992 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.460 -3.394 -25.065 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.030 3.970 3 H 0.104 0.896 4 O -0.287 6.287 5 C 0.125 3.875 6 C -0.243 4.243 7 C -0.197 4.197 8 N -0.301 5.301 9 C -0.087 4.087 10 H 0.093 0.907 11 C 0.015 3.985 12 N -0.356 5.356 13 C 0.290 3.710 14 O -0.394 6.394 15 C 0.275 3.725 16 O -0.415 6.415 17 N -0.331 5.331 18 C 0.006 3.994 19 C 0.054 3.946 20 C -0.191 4.191 21 C -0.191 4.191 22 C -0.545 4.545 23 H 0.077 0.923 24 C -0.136 4.136 25 N -0.522 5.522 26 Si 0.722 3.278 27 H -0.198 1.198 28 H -0.211 1.211 29 H -0.211 1.211 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.171 0.829 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.245 0.755 43 H 0.248 0.752 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.028 0.972 47 H 0.106 0.894 48 H 0.047 0.953 49 H 0.046 0.954 50 H 0.106 0.894 51 H 0.027 0.973 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.212 -2.551 -25.164 26.301 hybrid contribution 0.032 -1.427 0.961 1.720 sum -7.180 -3.978 -24.204 25.558 Atomic orbital electron populations 1.21952 0.92848 1.03106 1.03260 1.23015 0.94927 0.96052 0.83029 0.89587 1.88729 1.44027 1.62760 1.33159 1.22758 0.86643 0.90624 0.87464 1.22644 1.02471 0.95295 1.03897 1.21883 0.95805 1.02785 0.99216 1.64067 1.24603 1.38589 1.02793 1.23688 0.90875 0.98571 0.95572 0.90722 1.21282 0.98999 0.94536 0.83714 1.45566 1.61801 1.16640 1.11585 1.20460 0.79608 0.87057 0.83868 1.90760 1.50006 1.16518 1.82127 1.19943 0.81160 0.87122 0.84233 1.90717 1.51932 1.16551 1.82311 1.46224 1.58413 1.17064 1.11395 1.21945 0.96353 0.95350 0.85721 1.18394 0.93675 0.92323 0.90179 1.21856 0.97740 0.99475 1.00063 1.21855 0.96239 1.00042 1.00985 1.20981 1.39656 0.97849 0.95970 0.92304 1.24892 0.95355 0.94915 0.98412 1.69814 1.47305 1.10700 1.24418 0.86502 0.79036 0.80153 0.82092 1.19769 1.21051 1.21070 0.91863 0.90525 0.91194 0.90884 0.90834 0.92192 0.91443 0.91253 0.91732 0.82879 0.89862 0.90199 0.75477 0.75170 0.92009 0.91988 0.97247 0.89432 0.95337 0.95361 0.89430 0.97256 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.64 37.16 0.36 -0.54 16 2 C 0.09 0.65 3.73 -25.72 -0.10 0.55 16 3 H 0.09 0.65 8.02 -51.93 -0.42 0.23 16 4 O -0.37 -3.29 10.49 -35.23 -0.37 -3.66 16 5 C 0.25 1.92 1.45 -67.13 -0.10 1.82 16 6 C -0.18 -1.12 8.80 37.16 0.33 -0.80 16 7 C -0.14 -0.99 9.21 37.16 0.34 -0.65 16 8 N -0.66 -5.01 6.79 -94.41 -0.64 -5.65 16 9 C 0.02 0.17 2.89 -65.57 -0.19 -0.02 16 10 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 11 C 0.14 1.23 5.43 -4.04 -0.02 1.21 16 12 N -0.70 -7.75 5.49 -60.73 -0.33 -8.08 16 13 C 0.51 7.56 7.89 -11.58 -0.09 7.47 16 14 O -0.52 -8.76 16.48 5.50 0.09 -8.67 16 15 C 0.50 8.52 7.89 -11.58 -0.09 8.43 16 16 O -0.54 -9.99 16.48 5.50 0.09 -9.90 16 17 N -0.68 -12.46 4.95 -60.72 -0.30 -12.76 16 18 C 0.13 2.65 4.50 -4.04 -0.02 2.64 16 19 C 0.05 1.27 0.50 -155.66 -0.08 1.19 16 20 C -0.13 -3.04 8.08 37.15 0.30 -2.74 16 21 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 22 C -0.51 -13.04 8.01 -34.44 -0.28 -13.32 16 23 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 24 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 25 N -0.88 -23.48 9.35 55.43 0.52 -22.96 16 26 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.35 2.33 8.21 -39.29 -0.32 2.00 16 40 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.41 4.07 7.75 -40.82 -0.32 3.75 16 43 H 0.41 7.45 5.63 -40.82 -0.23 7.22 16 44 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 46 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 47 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 51 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 52 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 413.81 15.07 6.24 6.24 Total: -1.00 -28.97 413.81 -8.08 -37.05 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.93 Total: 8.78 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 0.58 Total: 4.13 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.76 Total: -49.46 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.19 Total: -22.23 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -28.97 -8.08 -37.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418968089.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.386 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds