Wall clock time and date at job start Wed Apr 1 2020 01:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 110.59619 * 2 1 4 4 O 1.43975 * 110.54293 * 237.23743 * 2 1 3 5 5 C 1.43293 * 108.34591 * 218.77499 * 4 2 1 6 6 C 1.52999 * 109.70434 * 120.03954 * 5 4 2 7 7 C 1.53001 * 109.69863 * 240.54664 * 5 4 2 8 8 N 1.47949 * 108.35383 * 0.28841 * 5 4 2 9 9 C 1.48941 * 103.75380 * 23.09840 * 8 5 4 10 10 H 1.09005 * 111.03366 * 82.73589 * 9 8 5 11 11 C 1.53004 * 111.03209 * 206.65698 * 9 8 5 12 12 N 1.46503 * 109.46754 * 297.05369 * 11 9 8 13 13 C 1.34773 * 119.99635 * 179.97438 * 12 11 9 14 14 O 1.21345 * 120.00558 * 0.02562 * 13 12 11 15 15 C 1.49458 * 119.99763 * 179.97438 * 13 12 11 16 16 O 1.21348 * 120.00154 * 0.02562 * 15 13 12 17 17 N 1.34782 * 119.99646 * 180.02562 * 15 13 12 18 18 C 1.46503 * 119.99518 * 180.02562 * 17 15 13 19 19 C 1.52999 * 109.46771 * 179.97438 * 18 17 15 20 20 C 1.52993 * 109.47593 * 300.00569 * 19 18 17 21 21 C 1.53005 * 109.46836 * 60.00647 * 19 18 17 22 22 C 1.50704 * 109.46808 * 180.02562 * 19 18 17 23 23 H 1.07996 * 119.99887 * 0.02562 * 22 19 18 24 24 C 1.37876 * 119.99628 * 180.02562 * 22 19 18 25 25 N 1.31517 * 120.00505 * 359.97438 * 24 22 19 26 26 Si 1.86802 * 119.99802 * 180.02562 * 24 22 19 27 27 H 1.48505 * 109.47134 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47187 * 119.99705 * 26 24 22 29 29 H 1.48500 * 109.47266 * 239.99565 * 26 24 22 30 30 H 1.09002 * 109.46969 * 181.31146 * 1 2 3 31 31 H 1.08994 * 109.46827 * 301.30939 * 1 2 3 32 32 H 1.09000 * 109.46758 * 61.31123 * 1 2 3 33 33 H 1.09003 * 109.47273 * 61.45184 * 6 5 4 34 34 H 1.09001 * 109.46875 * 181.44852 * 6 5 4 35 35 H 1.08996 * 109.47203 * 301.45000 * 6 5 4 36 36 H 1.08997 * 109.47317 * 58.55132 * 7 5 4 37 37 H 1.09010 * 109.46836 * 178.54559 * 7 5 4 38 38 H 1.08997 * 109.47402 * 298.54709 * 7 5 4 39 39 H 1.00900 * 110.99788 * 142.38015 * 8 5 4 40 40 H 1.08996 * 109.46949 * 57.05557 * 11 9 8 41 41 H 1.08998 * 109.47061 * 177.05554 * 11 9 8 42 42 H 0.96994 * 120.00172 * 0.02562 * 12 11 9 43 43 H 0.96997 * 120.00466 * 0.02562 * 17 15 13 44 44 H 1.08997 * 109.47433 * 300.00609 * 18 17 15 45 45 H 1.09005 * 109.46948 * 60.00188 * 18 17 15 46 46 H 1.08996 * 109.47395 * 59.99792 * 20 19 18 47 47 H 1.09003 * 109.47084 * 180.02562 * 20 19 18 48 48 H 1.09005 * 109.46893 * 299.99999 * 20 19 18 49 49 H 1.08996 * 109.47298 * 59.99764 * 21 19 18 50 50 H 1.09003 * 109.46974 * 179.97438 * 21 19 18 51 51 H 1.08996 * 109.46895 * 299.99439 * 21 19 18 52 52 H 0.96991 * 120.00203 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9135 1.0203 0.0000 4 8 2.0353 -0.7296 -1.1337 5 6 3.1865 -1.4731 -0.7150 6 6 2.9442 -2.9674 -0.9367 7 6 4.4096 -1.0255 -1.5180 8 7 3.4116 -1.2122 0.7238 9 6 2.0737 -0.7850 1.2197 10 1 1.4451 -1.6475 1.4416 11 6 2.2062 0.1242 2.4431 12 7 2.8326 -0.6197 3.5388 13 6 3.0520 -0.0165 4.7239 14 8 2.7303 1.1425 4.8836 15 6 3.6905 -0.7756 5.8419 16 8 4.0118 -1.9349 5.6824 17 7 3.9093 -0.1725 7.0272 18 6 4.5357 -0.9165 8.1229 19 6 4.6688 -0.0071 9.3460 20 6 5.5350 1.2028 8.9903 21 6 3.2813 0.4692 9.7808 22 6 5.3137 -0.7721 10.4729 23 1 5.6004 -1.8036 10.3307 24 6 5.5378 -0.1552 11.6854 25 7 5.1892 1.1011 11.8585 26 14 6.3378 -1.1032 13.0821 27 1 6.6328 -2.4883 12.6350 28 1 7.6014 -0.4305 13.4770 29 1 5.4149 -1.1448 14.2447 30 1 -0.3633 -1.0274 0.0235 31 1 -0.3633 0.5340 0.8780 32 1 -0.3633 0.4933 -0.9015 33 1 2.7854 -3.1562 -1.9985 34 1 3.8117 -3.5310 -0.5933 35 1 2.0629 -3.2796 -0.3764 36 1 4.5699 0.0426 -1.3707 37 1 5.2878 -1.5749 -1.1787 38 1 4.2424 -1.2253 -2.5764 39 1 3.7236 -2.0463 1.1980 40 1 2.8231 0.9863 2.1899 41 1 1.2176 0.4632 2.7527 42 1 3.0901 -1.5461 3.4111 43 1 3.6522 0.7540 7.1548 44 1 3.9189 -1.7787 8.3760 45 1 5.5244 -1.2554 7.8133 46 1 5.0690 1.7563 8.1751 47 1 5.6301 1.8504 9.8619 48 1 6.5235 0.8635 8.6806 49 1 2.6642 -0.3927 10.0342 50 1 3.3760 1.1167 10.6525 51 1 2.8153 1.0227 8.9656 52 1 5.3471 1.5352 12.7113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418968089.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:38 Heat of formation + Delta-G solvation = -138.836548 kcal Electronic energy + Delta-G solvation = -30436.953467 eV Core-core repulsion = 26242.544893 eV Total energy + Delta-G solvation = -4194.408574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.81135 -41.25750 -39.70114 -38.18299 -36.68618 -35.08142 -35.04555 -33.80028 -32.73348 -30.71781 -29.21253 -28.26446 -27.70372 -27.58029 -27.13701 -25.12156 -23.60438 -22.14854 -21.91168 -21.21996 -20.68861 -19.64559 -18.05193 -17.96995 -17.65491 -17.35273 -16.98616 -16.68882 -16.46005 -16.06513 -15.82312 -15.72442 -15.22665 -14.99563 -14.75760 -14.51663 -14.48163 -14.40050 -14.03616 -13.86999 -13.79149 -13.30053 -13.21209 -13.13406 -13.06033 -13.03115 -12.79818 -12.75469 -12.70548 -12.55514 -12.52544 -12.29891 -12.27434 -12.11626 -11.99455 -11.50116 -11.29347 -10.81744 -10.75603 -10.62506 -10.41064 -10.35329 -10.10701 -9.82577 -8.01022 -6.17313 0.36294 1.33101 1.43446 1.48002 1.56988 2.16301 2.45008 2.51334 2.69420 2.91338 3.22878 3.41681 3.55482 3.70027 3.81798 3.93947 4.05052 4.21245 4.35437 4.36789 4.40092 4.48295 4.54502 4.66760 4.68768 4.70208 4.79991 4.82638 4.89484 4.93514 4.98419 5.04824 5.05871 5.06662 5.11946 5.12200 5.18021 5.22884 5.28232 5.35441 5.49009 5.65451 5.68516 5.92510 6.04579 6.12062 6.15691 6.19757 6.38700 6.42035 6.73506 6.87286 6.97438 7.50651 8.98361 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.001899 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.906824 B =14738.666089 C =15236.357510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.085 3.915 3 H 0.081 0.919 4 O -0.385 6.385 5 C 0.248 3.752 6 C -0.179 4.179 7 C -0.138 4.138 8 N -0.674 5.674 9 C 0.032 3.968 10 H 0.088 0.912 11 C 0.140 3.860 12 N -0.682 5.682 13 C 0.515 3.485 14 O -0.541 6.541 15 C 0.498 3.502 16 O -0.550 6.550 17 N -0.681 5.681 18 C 0.144 3.856 19 C 0.049 3.951 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.523 4.523 23 H 0.052 0.948 24 C 0.025 3.975 25 N -0.901 5.901 26 Si 0.948 3.052 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.283 1.283 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.358 0.642 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.417 0.583 43 H 0.413 0.587 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.030 0.970 47 H 0.063 0.937 48 H 0.023 0.977 49 H 0.024 0.976 50 H 0.063 0.937 51 H 0.030 0.970 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 -4.124 -26.225 27.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.027 3.973 3 H 0.099 0.901 4 O -0.304 6.304 5 C 0.120 3.880 6 C -0.238 4.238 7 C -0.196 4.196 8 N -0.310 5.310 9 C -0.078 4.078 10 H 0.105 0.895 11 C 0.017 3.983 12 N -0.335 5.335 13 C 0.295 3.705 14 O -0.418 6.418 15 C 0.278 3.722 16 O -0.430 6.430 17 N -0.333 5.333 18 C 0.021 3.979 19 C 0.048 3.952 20 C -0.182 4.182 21 C -0.181 4.181 22 C -0.562 4.562 23 H 0.070 0.930 24 C -0.175 4.175 25 N -0.540 5.540 26 Si 0.775 3.225 27 H -0.196 1.196 28 H -0.210 1.210 29 H -0.209 1.209 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.177 0.823 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.254 0.746 43 H 0.251 0.749 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.049 0.951 47 H 0.082 0.918 48 H 0.042 0.958 49 H 0.043 0.957 50 H 0.081 0.919 51 H 0.049 0.951 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.769 -3.305 -26.365 27.684 hybrid contribution 0.206 -1.209 1.233 1.739 sum -7.563 -4.514 -25.132 26.631 Atomic orbital electron populations 1.21945 0.91619 1.03405 1.03824 1.23092 0.95876 0.95666 0.82659 0.90114 1.88718 1.44509 1.63127 1.34017 1.22879 0.86397 0.91368 0.87343 1.22600 1.02986 0.94268 1.03953 1.21879 0.96123 1.01981 0.99586 1.64044 1.24844 1.39097 1.03010 1.23596 0.91014 0.98572 0.94617 0.89457 1.21417 0.99057 0.94412 0.83463 1.45519 1.60269 1.16934 1.10734 1.19953 0.79797 0.86544 0.84182 1.90761 1.51344 1.17184 1.82508 1.20333 0.80508 0.86986 0.84348 1.90709 1.52374 1.17279 1.82592 1.46070 1.58793 1.17007 1.11455 1.21540 0.96071 0.94695 0.85621 1.18398 0.93635 0.92573 0.90576 1.21706 0.97719 0.99096 0.99657 1.21702 0.96188 0.99556 1.00696 1.21263 1.39947 0.97832 0.97123 0.93020 1.25508 0.95972 0.95689 1.00325 1.69931 1.47811 1.11520 1.24721 0.85656 0.78120 0.79056 0.79650 1.19607 1.20972 1.20949 0.91684 0.89373 0.91229 0.90906 0.89700 0.92176 0.92774 0.90527 0.91293 0.82269 0.90694 0.89120 0.74594 0.74928 0.92650 0.92749 0.95146 0.91832 0.95781 0.95717 0.91850 0.95108 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.64 71.99 0.69 -0.78 16 2 C 0.09 1.13 3.73 31.25 0.12 1.25 16 3 H 0.08 1.14 8.02 -2.39 -0.02 1.12 16 4 O -0.39 -6.39 10.49 -148.98 -1.56 -7.95 16 5 C 0.25 3.39 1.45 44.71 0.07 3.46 16 6 C -0.18 -1.86 8.80 71.98 0.63 -1.23 16 7 C -0.14 -1.83 9.21 71.98 0.66 -1.16 16 8 N -0.67 -8.99 6.79 -551.85 -3.75 -12.74 16 9 C 0.03 0.40 2.89 45.17 0.13 0.53 16 10 H 0.09 0.90 8.04 -2.38 -0.02 0.88 16 11 C 0.14 2.21 5.43 86.38 0.47 2.68 16 12 N -0.68 -13.65 5.49 -464.40 -2.55 -16.20 16 13 C 0.52 14.42 7.89 87.27 0.69 15.11 16 14 O -0.54 -17.39 16.48 -3.23 -0.05 -17.45 16 15 C 0.50 16.41 7.89 87.27 0.69 17.10 16 16 O -0.55 -19.73 16.48 -3.24 -0.05 -19.78 16 17 N -0.68 -24.23 4.95 -464.39 -2.30 -26.53 16 18 C 0.14 5.87 4.50 86.38 0.39 6.25 16 19 C 0.05 2.24 0.50 -52.93 -0.03 2.22 16 20 C -0.12 -5.61 8.08 71.98 0.58 -5.03 16 21 C -0.12 -5.57 8.08 71.98 0.58 -4.98 16 22 C -0.52 -26.99 8.01 25.60 0.21 -26.79 16 23 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 24 C 0.02 1.29 5.15 84.65 0.44 1.72 16 25 N -0.90 -48.12 9.35 21.45 0.20 -47.92 16 26 Si 0.95 42.07 29.54 68.60 2.03 44.09 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 29 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.36 3.99 8.21 -89.69 -0.74 3.26 16 40 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.42 7.32 7.75 -92.71 -0.72 6.60 16 43 H 0.41 14.41 5.63 -92.71 -0.52 13.89 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 46 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 47 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 48 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 49 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 51 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 52 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 Total: -1.00 -60.61 413.81 -2.76 -63.37 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: -1.04 Total: 30.78 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 6.31 Total: 10.33 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -8.40 Total: -103.39 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.67 Total: -45.18 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -60.61 -2.76 -63.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418968089.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.464 kcal (2) G-P(sol) polarization free energy of solvation -60.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds