Wall clock time and date at job start Wed Apr 1 2020 01:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.52380 * 2 1 4 4 O 1.44672 * 110.71787 * 237.10950 * 2 1 3 5 5 C 1.44380 * 104.03526 * 203.21349 * 4 2 1 6 6 C 1.52999 * 110.21331 * 280.71968 * 5 4 2 7 7 C 1.52995 * 110.21216 * 158.81104 * 5 4 2 8 8 N 1.48024 * 105.65428 * 39.76510 * 5 4 2 9 9 C 1.48083 * 105.83691 * 335.36505 * 8 5 4 10 10 H 1.08999 * 110.39377 * 242.05583 * 9 8 5 11 11 C 1.53002 * 110.38704 * 119.79185 * 9 8 5 12 12 N 1.46491 * 109.47345 * 56.45254 * 11 9 8 13 13 C 1.34783 * 120.00260 * 180.02562 * 12 11 9 14 14 O 1.21351 * 119.99561 * 359.97438 * 13 12 11 15 15 C 1.49445 * 120.00252 * 179.97438 * 13 12 11 16 16 O 1.21351 * 120.00187 * 0.02562 * 15 13 12 17 17 N 1.34775 * 120.00026 * 180.02562 * 15 13 12 18 18 C 1.46504 * 120.00076 * 180.02562 * 17 15 13 19 19 C 1.52995 * 109.47136 * 179.97438 * 18 17 15 20 20 C 1.53003 * 109.47374 * 300.00178 * 19 18 17 21 21 C 1.53004 * 109.47388 * 60.00178 * 19 18 17 22 22 C 1.50703 * 109.47360 * 180.02562 * 19 18 17 23 23 H 1.07997 * 119.99657 * 1.34819 * 22 19 18 24 24 C 1.37874 * 120.00089 * 181.34877 * 22 19 18 25 25 N 1.31514 * 119.99639 * 193.97944 * 24 22 19 26 26 Si 1.86794 * 120.00361 * 13.97264 * 24 22 19 27 27 H 1.48505 * 109.46761 * 84.54824 * 26 24 22 28 28 H 1.48496 * 109.47713 * 204.55071 * 26 24 22 29 29 H 1.48500 * 109.47217 * 324.55375 * 26 24 22 30 30 H 1.09002 * 109.46831 * 297.19636 * 1 2 3 31 31 H 1.08993 * 109.47659 * 57.19270 * 1 2 3 32 32 H 1.08994 * 109.47182 * 177.20339 * 1 2 3 33 33 H 1.09003 * 109.47412 * 176.22839 * 6 5 4 34 34 H 1.08995 * 109.47083 * 296.23168 * 6 5 4 35 35 H 1.09003 * 109.46742 * 56.22749 * 6 5 4 36 36 H 1.08997 * 109.47353 * 303.77118 * 7 5 4 37 37 H 1.08998 * 109.47535 * 63.77065 * 7 5 4 38 38 H 1.09006 * 109.47507 * 183.77167 * 7 5 4 39 39 H 1.00905 * 110.99735 * 214.83872 * 8 5 4 40 40 H 1.09005 * 109.47117 * 176.45408 * 11 9 8 41 41 H 1.08999 * 109.47088 * 296.44790 * 11 9 8 42 42 H 0.97002 * 120.00144 * 359.97438 * 12 11 9 43 43 H 0.97002 * 120.00392 * 359.97438 * 17 15 13 44 44 H 1.08994 * 109.47131 * 299.99646 * 18 17 15 45 45 H 1.09003 * 109.46879 * 60.00058 * 18 17 15 46 46 H 1.08990 * 109.47111 * 69.36475 * 20 19 18 47 47 H 1.08998 * 109.47262 * 189.36667 * 20 19 18 48 48 H 1.09001 * 109.46948 * 309.36556 * 20 19 18 49 49 H 1.08997 * 109.46998 * 59.99313 * 21 19 18 50 50 H 1.09001 * 109.47542 * 180.02562 * 21 19 18 51 51 H 1.09003 * 109.46688 * 299.99537 * 21 19 18 52 52 H 0.97007 * 120.00039 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9122 1.0209 0.0000 4 8 2.0418 -0.7348 -1.1363 5 6 3.3697 -1.1290 -0.7291 6 6 4.3400 0.0438 -0.8838 7 6 3.8449 -2.3225 -1.5599 8 7 3.2533 -1.5118 0.6961 9 6 2.0732 -0.7832 1.2152 10 1 2.3691 -0.0979 2.0095 11 6 1.0212 -1.7690 1.7276 12 7 1.6190 -2.6352 2.7466 13 6 0.8745 -3.5876 3.3426 14 8 -0.2912 -3.7273 3.0353 15 6 1.4844 -4.4717 4.3817 16 8 2.6499 -4.3317 4.6893 17 7 0.7401 -5.4244 4.9772 18 6 1.3378 -6.2907 5.9963 19 6 0.2860 -7.2768 6.5082 20 6 -0.8840 -6.5030 7.1191 21 6 -0.2202 -8.1321 5.3450 22 6 0.9007 -8.1675 7.5570 23 1 1.9318 -8.0285 7.8466 24 6 0.1468 -9.1599 8.1467 25 7 0.5779 -9.7518 9.2391 26 14 -1.4870 -9.6635 7.3942 27 1 -1.2509 -10.6637 6.3222 28 1 -2.3533 -10.2579 8.4437 29 1 -2.1558 -8.4693 6.8182 30 1 -0.3633 0.4697 0.9141 31 1 -0.3634 0.5568 -0.8637 32 1 -0.3633 -1.0264 -0.0501 33 1 5.3225 -0.2458 -0.5109 34 1 4.4166 0.3156 -1.9366 35 1 3.9722 0.8972 -0.3141 36 1 3.1280 -3.1383 -1.4671 37 1 3.9264 -2.0277 -2.6061 38 1 4.8191 -2.6521 -1.1984 39 1 4.0866 -1.2612 1.2070 40 1 0.1879 -1.2174 2.1629 41 1 0.6602 -2.3783 0.8990 42 1 2.5508 -2.5238 2.9919 43 1 -0.1917 -5.5361 4.7317 44 1 2.1716 -6.8417 5.5612 45 1 1.6980 -5.6814 6.8253 46 1 -1.4308 -5.9880 6.3294 47 1 -1.5514 -7.1970 7.6300 48 1 -0.5034 -5.7728 7.8333 49 1 0.6134 -8.6833 4.9097 50 1 -0.9699 -8.8344 5.7096 51 1 -0.6650 -7.4876 4.5868 52 1 0.0477 -10.4503 9.6538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418968090.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:43 Heat of formation + Delta-G solvation = -92.015526 kcal Electronic energy + Delta-G solvation = -30783.624230 eV Core-core repulsion = 26591.245968 eV Total energy + Delta-G solvation = -4192.378262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.07470 -40.27049 -38.41313 -36.78249 -35.73851 -34.40125 -33.51521 -32.88220 -31.48239 -30.36044 -28.20495 -27.76795 -26.53538 -26.32321 -25.08213 -24.52502 -22.94035 -21.21816 -20.84895 -20.05933 -19.33737 -18.20260 -17.66742 -16.79967 -16.48115 -16.06828 -15.80981 -15.63667 -15.38907 -15.13920 -14.95622 -14.71988 -14.27647 -14.21650 -13.59816 -13.52623 -13.35424 -13.08459 -12.95665 -12.87135 -12.77911 -12.64851 -12.61371 -12.35904 -12.21961 -12.16854 -12.01840 -11.98846 -11.86466 -11.49593 -11.36227 -11.33166 -10.46813 -10.38605 -10.31662 -10.16529 -10.06137 -9.42254 -9.29110 -9.21501 -9.10600 -8.69346 -8.68126 -8.45940 -6.15074 -4.12670 1.64381 2.52767 3.19002 3.26428 3.34413 3.40494 3.40656 3.46988 3.86092 4.07463 4.20600 4.32957 4.36037 4.36502 4.60164 4.68959 4.75998 4.88646 4.89096 5.05201 5.15913 5.19304 5.20347 5.31405 5.36848 5.42510 5.45187 5.52208 5.65058 5.71791 5.75760 5.93072 6.00941 6.06270 6.14360 6.37028 6.41304 6.43253 6.50597 6.59560 6.63879 6.70175 6.78420 6.91987 7.11804 7.19400 7.41165 7.64138 7.71600 7.94726 8.29089 8.44385 8.89329 9.48847 10.97723 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024771 B = 0.002069 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.065475 B =13527.989617 C =13876.403629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 H 0.077 0.923 4 O -0.355 6.355 5 C 0.252 3.748 6 C -0.195 4.195 7 C -0.127 4.127 8 N -0.673 5.673 9 C 0.031 3.969 10 H 0.084 0.916 11 C 0.138 3.862 12 N -0.693 5.693 13 C 0.507 3.493 14 O -0.526 6.526 15 C 0.498 3.502 16 O -0.531 6.531 17 N -0.687 5.687 18 C 0.139 3.861 19 C 0.028 3.972 20 C -0.145 4.145 21 C -0.150 4.150 22 C -0.513 4.513 23 H 0.077 0.923 24 C 0.076 3.924 25 N -0.890 5.890 26 Si 0.884 3.116 27 H -0.285 1.285 28 H -0.305 1.305 29 H -0.248 1.248 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.353 0.647 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.413 0.587 43 H 0.409 0.591 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.024 0.976 47 H 0.057 0.943 48 H 0.048 0.952 49 H 0.054 0.946 50 H 0.043 0.957 51 H 0.032 0.968 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 22.519 -20.484 30.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.006 3.994 3 H 0.095 0.905 4 O -0.271 6.271 5 C 0.124 3.876 6 C -0.255 4.255 7 C -0.185 4.185 8 N -0.309 5.309 9 C -0.080 4.080 10 H 0.102 0.898 11 C 0.014 3.986 12 N -0.346 5.346 13 C 0.288 3.712 14 O -0.402 6.402 15 C 0.278 3.722 16 O -0.408 6.408 17 N -0.339 5.339 18 C 0.017 3.983 19 C 0.027 3.973 20 C -0.202 4.202 21 C -0.207 4.207 22 C -0.551 4.551 23 H 0.095 0.905 24 C -0.127 4.127 25 N -0.527 5.527 26 Si 0.717 3.283 27 H -0.213 1.213 28 H -0.234 1.234 29 H -0.174 1.174 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.171 0.829 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.249 0.751 43 H 0.246 0.754 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.043 0.957 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.073 0.927 50 H 0.061 0.939 51 H 0.051 0.949 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.353 21.667 -20.652 30.120 hybrid contribution -0.337 0.576 -0.100 0.675 sum 3.016 22.243 -20.752 30.570 Atomic orbital electron populations 1.21923 0.92128 1.04105 1.02998 1.23337 0.96623 0.95104 0.84370 0.90522 1.89410 1.28554 1.72611 1.36575 1.23071 0.83699 0.93250 0.87593 1.22818 1.00065 0.98638 1.03934 1.21613 1.01880 0.96407 0.98576 1.63066 1.06501 1.58328 1.03003 1.23195 0.92519 0.94653 0.97587 0.89780 1.21488 0.94400 0.91815 0.90933 1.45539 1.15542 1.33920 1.39612 1.20400 0.86433 0.81575 0.82810 1.90746 1.16329 1.69584 1.63492 1.19966 0.86748 0.82395 0.83093 1.90735 1.16112 1.70224 1.63762 1.46189 1.15422 1.32819 1.39515 1.21712 0.96820 0.91093 0.88680 1.18745 0.92179 0.92618 0.93795 1.22318 0.98724 0.99856 0.99317 1.22383 1.00399 0.99720 0.98232 1.20675 0.99783 1.15076 1.19559 0.90462 1.24961 0.97611 0.96153 0.93965 1.69949 1.39416 1.25722 1.17587 0.87306 0.84528 0.78856 0.77615 1.21296 1.23384 1.17406 0.90495 0.91433 0.90621 0.90796 0.90756 0.92272 0.90950 0.91689 0.90871 0.82919 0.90515 0.90252 0.75125 0.75427 0.91296 0.91224 0.95675 0.92375 0.93336 0.92678 0.93903 0.94922 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.48 37.16 0.32 -0.62 16 2 C 0.06 0.43 3.47 -25.98 -0.09 0.34 16 3 H 0.08 0.40 7.29 -51.93 -0.38 0.03 16 4 O -0.35 -3.17 10.92 -35.23 -0.38 -3.55 16 5 C 0.25 1.80 1.50 -67.10 -0.10 1.70 16 6 C -0.20 -0.99 8.73 37.16 0.32 -0.66 16 7 C -0.13 -0.91 9.30 37.16 0.35 -0.57 16 8 N -0.67 -4.72 6.37 -94.76 -0.60 -5.33 16 9 C 0.03 0.21 3.64 -66.30 -0.24 -0.03 16 10 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 11 C 0.14 1.27 4.12 -4.05 -0.02 1.25 16 12 N -0.69 -7.83 5.41 -60.73 -0.33 -8.16 16 13 C 0.51 7.46 7.89 -11.58 -0.09 7.37 16 14 O -0.53 -8.71 16.48 5.50 0.09 -8.62 16 15 C 0.50 8.34 7.89 -11.59 -0.09 8.25 16 16 O -0.53 -9.77 16.48 5.50 0.09 -9.68 16 17 N -0.69 -11.95 5.00 -60.73 -0.30 -12.25 16 18 C 0.14 2.75 4.49 -4.04 -0.02 2.73 16 19 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 20 C -0.14 -3.01 7.53 37.16 0.28 -2.73 16 21 C -0.15 -3.13 7.52 37.16 0.28 -2.85 16 22 C -0.51 -13.68 8.62 -34.44 -0.30 -13.98 16 23 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 24 C 0.08 2.11 5.32 -17.82 -0.09 2.01 16 25 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 26 Si 0.88 21.26 22.79 -169.99 -3.87 17.39 16 27 H -0.29 -6.85 7.10 56.52 0.40 -6.44 16 28 H -0.31 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.25 -5.48 4.65 56.52 0.26 -5.22 16 30 H 0.08 0.36 7.76 -51.93 -0.40 -0.05 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.56 6.49 -51.93 -0.34 0.23 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.28 6.97 -51.93 -0.36 -0.09 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.35 1.88 8.44 -39.29 -0.33 1.55 16 40 H 0.08 0.66 7.23 -51.93 -0.38 0.28 16 41 H 0.08 0.88 7.19 -51.93 -0.37 0.50 16 42 H 0.41 4.31 7.69 -40.82 -0.31 4.00 16 43 H 0.41 6.84 5.73 -40.82 -0.23 6.61 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.02 0.45 7.13 -51.93 -0.37 0.08 16 47 H 0.06 1.28 4.30 -51.93 -0.22 1.06 16 48 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 49 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 50 H 0.04 0.94 2.25 -51.93 -0.12 0.82 16 51 H 0.03 0.59 6.86 -51.93 -0.36 0.23 16 52 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -31.86 396.43 -6.66 -38.52 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.52 Total: 8.70 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 0.42 Total: 2.75 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.46 Total: -51.46 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.20 Total: -21.86 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -3.87 Total: 17.39 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.86 -6.66 -38.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418968090.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.499 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds