Wall clock time and date at job start Wed Apr 1 2020 01:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.52380 * 2 1 4 4 O 1.44672 * 110.71787 * 237.10950 * 2 1 3 5 5 C 1.44380 * 104.03526 * 203.21349 * 4 2 1 6 6 C 1.52999 * 110.21331 * 280.71968 * 5 4 2 7 7 C 1.52995 * 110.21216 * 158.81104 * 5 4 2 8 8 N 1.48024 * 105.65428 * 39.76510 * 5 4 2 9 9 C 1.48083 * 105.83691 * 335.36505 * 8 5 4 10 10 H 1.08999 * 110.39377 * 242.05583 * 9 8 5 11 11 C 1.53002 * 110.38704 * 119.79185 * 9 8 5 12 12 N 1.46491 * 109.47345 * 56.45254 * 11 9 8 13 13 C 1.34783 * 120.00260 * 180.02562 * 12 11 9 14 14 O 1.21351 * 119.99561 * 359.97438 * 13 12 11 15 15 C 1.49445 * 120.00252 * 179.97438 * 13 12 11 16 16 O 1.21351 * 120.00187 * 0.02562 * 15 13 12 17 17 N 1.34775 * 120.00026 * 180.02562 * 15 13 12 18 18 C 1.46504 * 120.00076 * 180.02562 * 17 15 13 19 19 C 1.52995 * 109.47136 * 179.97438 * 18 17 15 20 20 C 1.53003 * 109.47374 * 300.00178 * 19 18 17 21 21 C 1.53004 * 109.47388 * 60.00178 * 19 18 17 22 22 C 1.50703 * 109.47360 * 180.02562 * 19 18 17 23 23 H 1.07997 * 119.99657 * 1.34819 * 22 19 18 24 24 C 1.37874 * 120.00089 * 181.34877 * 22 19 18 25 25 N 1.31514 * 119.99639 * 193.97944 * 24 22 19 26 26 Si 1.86794 * 120.00361 * 13.97264 * 24 22 19 27 27 H 1.48505 * 109.46761 * 84.54824 * 26 24 22 28 28 H 1.48496 * 109.47713 * 204.55071 * 26 24 22 29 29 H 1.48500 * 109.47217 * 324.55375 * 26 24 22 30 30 H 1.09002 * 109.46831 * 297.19636 * 1 2 3 31 31 H 1.08993 * 109.47659 * 57.19270 * 1 2 3 32 32 H 1.08994 * 109.47182 * 177.20339 * 1 2 3 33 33 H 1.09003 * 109.47412 * 176.22839 * 6 5 4 34 34 H 1.08995 * 109.47083 * 296.23168 * 6 5 4 35 35 H 1.09003 * 109.46742 * 56.22749 * 6 5 4 36 36 H 1.08997 * 109.47353 * 303.77118 * 7 5 4 37 37 H 1.08998 * 109.47535 * 63.77065 * 7 5 4 38 38 H 1.09006 * 109.47507 * 183.77167 * 7 5 4 39 39 H 1.00905 * 110.99735 * 214.83872 * 8 5 4 40 40 H 1.09005 * 109.47117 * 176.45408 * 11 9 8 41 41 H 1.08999 * 109.47088 * 296.44790 * 11 9 8 42 42 H 0.97002 * 120.00144 * 359.97438 * 12 11 9 43 43 H 0.97002 * 120.00392 * 359.97438 * 17 15 13 44 44 H 1.08994 * 109.47131 * 299.99646 * 18 17 15 45 45 H 1.09003 * 109.46879 * 60.00058 * 18 17 15 46 46 H 1.08990 * 109.47111 * 69.36475 * 20 19 18 47 47 H 1.08998 * 109.47262 * 189.36667 * 20 19 18 48 48 H 1.09001 * 109.46948 * 309.36556 * 20 19 18 49 49 H 1.08997 * 109.46998 * 59.99313 * 21 19 18 50 50 H 1.09001 * 109.47542 * 180.02562 * 21 19 18 51 51 H 1.09003 * 109.46688 * 299.99537 * 21 19 18 52 52 H 0.97007 * 120.00039 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9122 1.0209 0.0000 4 8 2.0418 -0.7348 -1.1363 5 6 3.3697 -1.1290 -0.7291 6 6 4.3400 0.0438 -0.8838 7 6 3.8449 -2.3225 -1.5599 8 7 3.2533 -1.5118 0.6961 9 6 2.0732 -0.7832 1.2152 10 1 2.3691 -0.0979 2.0095 11 6 1.0212 -1.7690 1.7276 12 7 1.6190 -2.6352 2.7466 13 6 0.8745 -3.5876 3.3426 14 8 -0.2912 -3.7273 3.0353 15 6 1.4844 -4.4717 4.3817 16 8 2.6499 -4.3317 4.6893 17 7 0.7401 -5.4244 4.9772 18 6 1.3378 -6.2907 5.9963 19 6 0.2860 -7.2768 6.5082 20 6 -0.8840 -6.5030 7.1191 21 6 -0.2202 -8.1321 5.3450 22 6 0.9007 -8.1675 7.5570 23 1 1.9318 -8.0285 7.8466 24 6 0.1468 -9.1599 8.1467 25 7 0.5779 -9.7518 9.2391 26 14 -1.4870 -9.6635 7.3942 27 1 -1.2509 -10.6637 6.3222 28 1 -2.3533 -10.2579 8.4437 29 1 -2.1558 -8.4693 6.8182 30 1 -0.3633 0.4697 0.9141 31 1 -0.3634 0.5568 -0.8637 32 1 -0.3633 -1.0264 -0.0501 33 1 5.3225 -0.2458 -0.5109 34 1 4.4166 0.3156 -1.9366 35 1 3.9722 0.8972 -0.3141 36 1 3.1280 -3.1383 -1.4671 37 1 3.9264 -2.0277 -2.6061 38 1 4.8191 -2.6521 -1.1984 39 1 4.0866 -1.2612 1.2070 40 1 0.1879 -1.2174 2.1629 41 1 0.6602 -2.3783 0.8990 42 1 2.5508 -2.5238 2.9919 43 1 -0.1917 -5.5361 4.7317 44 1 2.1716 -6.8417 5.5612 45 1 1.6980 -5.6814 6.8253 46 1 -1.4308 -5.9880 6.3294 47 1 -1.5514 -7.1970 7.6300 48 1 -0.5034 -5.7728 7.8333 49 1 0.6134 -8.6833 4.9097 50 1 -0.9699 -8.8344 5.7096 51 1 -0.6650 -7.4876 4.5868 52 1 0.0477 -10.4503 9.6538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418968090.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:42 Heat of formation + Delta-G solvation = -119.951952 kcal Electronic energy + Delta-G solvation = -30784.835644 eV Core-core repulsion = 26591.245968 eV Total energy + Delta-G solvation = -4193.589677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.84301 -41.32035 -39.71975 -38.41739 -36.62314 -35.07216 -34.89358 -33.80556 -33.38894 -30.84898 -29.08228 -28.34390 -28.05262 -27.77279 -27.01378 -25.34776 -24.07265 -21.84911 -21.47992 -21.24182 -20.99335 -19.49119 -18.28740 -18.12600 -17.81047 -17.35078 -17.01139 -16.90228 -16.41270 -16.08721 -15.94490 -15.84727 -15.39382 -15.12746 -14.87504 -14.68792 -14.56224 -14.35314 -14.03351 -14.02454 -13.81433 -13.77040 -13.56127 -13.26048 -13.23872 -12.97468 -12.87588 -12.77319 -12.71000 -12.51198 -12.39292 -12.36589 -12.19631 -11.97254 -11.91284 -11.78012 -11.09625 -10.93792 -10.66158 -10.61175 -10.40073 -10.26706 -10.14897 -9.73603 -8.29725 -6.30726 0.38979 1.36668 1.37418 1.39291 1.50493 2.18797 2.34893 2.58896 2.78919 2.96399 3.06359 3.46655 3.55670 3.65793 3.86948 3.90087 4.02463 4.09633 4.24689 4.30122 4.35772 4.38975 4.48801 4.50237 4.67621 4.70535 4.71888 4.78388 4.80057 4.82483 4.84521 4.85327 4.91286 4.99450 5.02977 5.04771 5.09450 5.16171 5.19160 5.28184 5.30657 5.38074 5.47601 5.68276 5.75860 5.91225 5.98275 6.29148 6.35673 6.42462 6.71980 6.79814 6.99309 7.34050 8.86794 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024771 B = 0.002069 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.065475 B =13527.989617 C =13876.403629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 H 0.096 0.904 4 O -0.381 6.381 5 C 0.247 3.753 6 C -0.188 4.188 7 C -0.127 4.127 8 N -0.685 5.685 9 C 0.037 3.963 10 H 0.110 0.890 11 C 0.137 3.863 12 N -0.674 5.674 13 C 0.512 3.488 14 O -0.545 6.545 15 C 0.500 3.500 16 O -0.549 6.549 17 N -0.683 5.683 18 C 0.153 3.847 19 C 0.026 3.974 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.513 4.513 23 H 0.036 0.964 24 C 0.020 3.980 25 N -0.942 5.942 26 Si 0.940 3.060 27 H -0.283 1.283 28 H -0.315 1.315 29 H -0.210 1.210 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.363 0.637 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.418 0.582 43 H 0.415 0.585 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.051 0.949 50 H 0.036 0.964 51 H 0.066 0.934 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.910 24.929 -22.359 33.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.005 3.995 3 H 0.114 0.886 4 O -0.299 6.299 5 C 0.120 3.880 6 C -0.247 4.247 7 C -0.185 4.185 8 N -0.323 5.323 9 C -0.074 4.074 10 H 0.128 0.872 11 C 0.014 3.986 12 N -0.327 5.327 13 C 0.292 3.708 14 O -0.423 6.423 15 C 0.281 3.719 16 O -0.427 6.427 17 N -0.336 5.336 18 C 0.030 3.970 19 C 0.024 3.976 20 C -0.201 4.201 21 C -0.207 4.207 22 C -0.551 4.551 23 H 0.054 0.946 24 C -0.178 4.178 25 N -0.581 5.581 26 Si 0.769 3.231 27 H -0.210 1.210 28 H -0.244 1.244 29 H -0.134 1.134 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.182 0.818 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.256 0.744 43 H 0.253 0.747 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.054 0.946 51 H 0.084 0.916 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.461 24.131 -22.569 33.132 hybrid contribution 0.092 -0.114 0.464 0.486 sum 2.553 24.017 -22.105 32.741 Atomic orbital electron populations 1.21941 0.92048 1.03157 1.04005 1.23488 0.96774 0.95700 0.83536 0.88585 1.89388 1.29556 1.73151 1.37764 1.23175 0.83598 0.93850 0.87415 1.22741 1.00022 0.97883 1.04058 1.21624 1.01688 0.95987 0.99218 1.62971 1.07158 1.58935 1.03234 1.23169 0.91716 0.94164 0.98323 0.87237 1.21651 0.95647 0.91668 0.89644 1.45535 1.15537 1.32744 1.38845 1.19950 0.86263 0.81984 0.82637 1.90744 1.16969 1.70358 1.64201 1.20343 0.86393 0.82136 0.83058 1.90729 1.16997 1.70660 1.64356 1.45974 1.15688 1.32801 1.39141 1.21296 0.95941 0.90819 0.88927 1.18689 0.93030 0.92625 0.93210 1.22245 0.98031 0.99590 1.00211 1.22329 1.00274 0.99818 0.98284 1.20952 0.98176 1.15638 1.20322 0.94566 1.25776 1.01596 0.96258 0.94166 1.70094 1.41454 1.26987 1.19595 0.86404 0.80376 0.79696 0.76590 1.20996 1.24415 1.13395 0.88800 0.91244 0.92409 0.89595 0.90934 0.91512 0.93252 0.91220 0.89919 0.81758 0.89437 0.92177 0.74447 0.74682 0.92414 0.92411 0.92322 0.93487 0.93475 0.92973 0.94620 0.91565 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.48 71.98 0.61 -0.99 16 2 C 0.06 0.69 3.47 31.08 0.11 0.80 16 3 H 0.10 0.70 7.29 -2.38 -0.02 0.68 16 4 O -0.38 -6.32 10.92 -148.98 -1.63 -7.94 16 5 C 0.25 3.13 1.50 44.70 0.07 3.20 16 6 C -0.19 -1.45 8.73 71.98 0.63 -0.82 16 7 C -0.13 -1.73 9.30 71.98 0.67 -1.06 16 8 N -0.69 -8.22 6.37 -552.28 -3.52 -11.74 16 9 C 0.04 0.40 3.64 45.18 0.16 0.56 16 10 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 11 C 0.14 2.25 4.12 86.38 0.36 2.61 16 12 N -0.67 -13.85 5.41 -464.42 -2.51 -16.36 16 13 C 0.51 14.07 7.89 87.27 0.69 14.76 16 14 O -0.54 -16.92 16.48 -3.25 -0.05 -16.97 16 15 C 0.50 15.92 7.89 87.27 0.69 16.61 16 16 O -0.55 -19.57 16.48 -3.25 -0.05 -19.63 16 17 N -0.68 -22.44 5.00 -464.42 -2.32 -24.76 16 18 C 0.15 5.98 4.49 86.38 0.39 6.37 16 19 C 0.03 1.09 0.50 -52.93 -0.03 1.07 16 20 C -0.14 -5.60 7.53 71.98 0.54 -5.06 16 21 C -0.15 -5.85 7.52 71.98 0.54 -5.31 16 22 C -0.51 -27.86 8.62 25.60 0.22 -27.64 16 23 H 0.04 2.20 7.99 -2.91 -0.02 2.18 16 24 C 0.02 1.12 5.32 84.65 0.45 1.57 16 25 N -0.94 -57.95 13.96 21.45 0.30 -57.65 16 26 Si 0.94 43.30 22.79 68.60 1.56 44.86 16 27 H -0.28 -12.82 7.10 99.48 0.71 -12.12 16 28 H -0.31 -14.92 7.11 99.48 0.71 -14.21 16 29 H -0.21 -8.39 4.65 99.48 0.46 -7.92 16 30 H 0.09 0.63 7.76 -2.39 -0.02 0.61 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.81 6.49 -2.39 -0.02 0.80 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.42 6.97 -2.39 -0.02 0.40 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.36 2.93 8.44 -89.69 -0.76 2.17 16 40 H 0.09 1.29 7.23 -2.38 -0.02 1.27 16 41 H 0.06 1.27 7.19 -2.39 -0.02 1.25 16 42 H 0.42 7.81 7.69 -92.71 -0.71 7.09 16 43 H 0.42 12.63 5.73 -92.71 -0.53 12.10 16 44 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.06 1.90 7.13 -2.39 -0.02 1.88 16 47 H 0.05 1.93 4.30 -2.39 -0.01 1.92 16 48 H 0.05 1.83 8.12 -2.39 -0.02 1.81 16 49 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.04 1.45 2.25 -2.39 -0.01 1.44 16 51 H 0.07 2.13 6.86 -2.39 -0.02 2.12 16 52 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -70.40 396.43 -3.41 -73.81 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -1.28 Total: 29.73 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 6.10 Total: 6.64 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -8.05 Total: -110.51 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -1.73 Total: -44.54 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.56 Total: 44.86 kcal Total: -70.40 -3.41 -73.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418968090.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.138 kcal (2) G-P(sol) polarization free energy of solvation -70.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds