Wall clock time and date at job start Wed Apr 1 2020 01:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.50703 * 2 1 4 4 C 1.53098 * 109.50313 * 239.86947 * 2 1 3 5 5 O 1.43015 * 109.29196 * 183.23929 * 4 2 1 6 6 C 1.43020 * 113.73974 * 58.60103 * 5 4 2 7 7 C 1.53095 * 109.29124 * 301.39847 * 6 5 4 8 8 N 1.47015 * 109.25739 * 56.82758 * 7 6 5 9 9 C 1.46904 * 110.99903 * 177.60628 * 8 7 6 10 10 C 1.52998 * 109.47022 * 66.04584 * 9 8 7 11 11 N 1.46503 * 109.46925 * 179.97438 * 10 9 8 12 12 C 1.34785 * 119.99547 * 179.97438 * 11 10 9 13 13 O 1.21346 * 120.00402 * 0.02562 * 12 11 10 14 14 C 1.49452 * 119.99620 * 179.97438 * 12 11 10 15 15 O 1.21351 * 120.00023 * 0.02562 * 14 12 11 16 16 N 1.34777 * 119.99996 * 179.97438 * 14 12 11 17 17 C 1.46495 * 120.00030 * 179.97438 * 16 14 12 18 18 C 1.52998 * 109.47355 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.47065 * 300.00500 * 18 17 16 20 20 C 1.52996 * 109.46800 * 60.00142 * 18 17 16 21 21 C 1.50700 * 109.47442 * 180.02562 * 18 17 16 22 22 H 1.07998 * 119.99657 * 0.02562 * 21 18 17 23 23 C 1.37874 * 120.00114 * 180.02562 * 21 18 17 24 24 N 1.31515 * 119.99870 * 359.97438 * 23 21 18 25 25 Si 1.86796 * 120.00209 * 179.97438 * 23 21 18 26 26 H 1.48502 * 109.47110 * 89.99900 * 25 23 21 27 27 H 1.48498 * 109.47462 * 209.99901 * 25 23 21 28 28 H 1.48503 * 109.47232 * 330.00404 * 25 23 21 29 29 H 1.09000 * 109.46852 * 299.91242 * 1 2 3 30 30 H 1.08998 * 109.47111 * 59.91475 * 1 2 3 31 31 H 1.08999 * 109.46939 * 179.91513 * 1 2 3 32 32 H 1.09009 * 109.50876 * 303.15024 * 4 2 1 33 33 H 1.08998 * 109.50857 * 63.23676 * 4 2 1 34 34 H 1.09002 * 109.50941 * 181.44210 * 6 5 4 35 35 H 1.09003 * 109.50633 * 61.35674 * 6 5 4 36 36 H 1.08994 * 109.50879 * 176.75932 * 7 6 5 37 37 H 1.08995 * 109.51088 * 296.88999 * 7 6 5 38 38 H 1.09007 * 109.46938 * 186.04003 * 9 8 7 39 39 H 1.08996 * 109.47276 * 306.04379 * 9 8 7 40 40 H 1.08998 * 109.47331 * 300.00067 * 10 9 8 41 41 H 1.09004 * 109.47482 * 60.00389 * 10 9 8 42 42 H 0.96994 * 119.99992 * 0.02562 * 11 10 9 43 43 H 0.97001 * 119.99747 * 0.02562 * 16 14 12 44 44 H 1.08998 * 109.47473 * 300.00873 * 17 16 14 45 45 H 1.09004 * 109.47220 * 60.00476 * 17 16 14 46 46 H 1.09000 * 109.47389 * 60.00076 * 19 18 17 47 47 H 1.09005 * 109.46843 * 179.97438 * 19 18 17 48 48 H 1.08996 * 109.47017 * 299.99674 * 19 18 17 49 49 H 1.09007 * 109.47446 * 60.00403 * 20 18 17 50 50 H 1.09005 * 109.47110 * 179.97438 * 20 18 17 51 51 H 1.08996 * 109.47763 * 300.00273 * 20 18 17 52 52 H 0.97006 * 119.99953 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2481 5 8 3.4693 -0.7881 -1.2059 6 6 3.9819 -1.4579 -0.0509 7 6 3.4904 -0.7410 1.2093 8 7 2.0210 -0.6948 1.1990 9 6 1.5056 -0.0635 2.4213 10 6 1.9159 1.4102 2.4462 11 7 1.4013 2.0398 3.6648 12 6 1.6421 3.3445 3.9025 13 8 2.2847 3.9977 3.1069 14 6 1.1167 3.9870 5.1454 15 8 0.4738 3.3339 5.9408 16 7 1.3579 5.2915 5.3833 17 6 0.8424 5.9214 6.6014 18 6 1.2535 7.3949 6.6267 19 6 2.7798 7.4990 6.6054 20 6 0.6766 8.1064 5.4013 21 6 0.7238 8.0427 7.8800 22 1 0.1515 7.4614 8.5879 23 6 0.9697 9.3774 8.1230 24 7 1.6670 10.0851 7.2612 25 14 0.3125 10.1806 9.6761 26 1 1.3171 10.0535 10.7623 27 1 0.0450 11.6178 9.4151 28 1 -0.9471 9.5091 10.0858 29 1 -0.3633 0.5125 0.8908 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6331 -1.7349 -1.2753 33 1 1.7266 -0.1808 -2.1390 34 1 5.0715 -1.4444 -0.0758 35 1 3.6308 -2.4899 -0.0429 36 1 3.8313 -1.2817 2.0921 37 1 3.8863 0.2744 1.2283 38 1 0.4182 -0.1382 2.4380 39 1 1.9180 -0.5703 3.2937 40 1 3.0032 1.4849 2.4294 41 1 1.5033 1.9171 1.5738 42 1 0.8881 1.5176 4.3009 43 1 1.8722 5.8134 4.7477 44 1 -0.2449 5.8475 6.6164 45 1 1.2531 5.4142 7.4745 46 1 3.1633 7.0304 5.6990 47 1 3.0726 8.5488 6.6230 48 1 3.1908 6.9921 7.4784 49 1 -0.4108 8.0323 5.4165 50 1 0.9691 9.1563 5.4196 51 1 1.0600 7.6378 4.4950 52 1 1.8397 11.0242 7.4320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422481111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:24 Heat of formation + Delta-G solvation = -111.713507 kcal Electronic energy + Delta-G solvation = -30327.908010 eV Core-core repulsion = 26134.675579 eV Total energy + Delta-G solvation = -4193.232431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.71223 -40.17865 -38.44090 -37.03060 -36.50508 -34.80998 -33.32518 -33.04950 -30.91436 -30.23728 -27.96039 -26.83382 -25.90381 -25.74536 -25.22094 -23.70904 -23.15040 -22.68766 -20.33674 -19.98115 -19.01580 -18.22570 -17.11943 -17.07777 -16.46439 -16.04506 -16.01988 -15.89275 -15.60423 -15.23459 -14.92070 -14.88768 -14.68691 -14.26771 -14.06443 -13.80290 -13.49143 -13.02323 -12.95440 -12.75349 -12.68010 -12.50032 -12.33281 -12.24729 -12.09824 -11.67802 -11.52961 -11.42426 -11.28635 -11.20520 -10.96179 -10.90029 -10.72294 -10.42209 -10.22009 -10.07225 -9.67667 -9.60193 -9.41391 -9.29476 -8.87656 -8.81885 -8.63761 -8.39202 -6.04426 -4.15296 1.59796 2.46098 3.22186 3.26671 3.33948 3.37267 3.42002 3.43916 3.91001 4.24687 4.32968 4.37411 4.42149 4.50761 4.63991 4.72721 4.74805 4.80237 4.92146 5.01373 5.12128 5.19066 5.22174 5.24527 5.33243 5.40020 5.42636 5.51063 5.53818 5.79550 6.00858 6.08340 6.20618 6.40338 6.42372 6.44337 6.59466 6.69789 6.79111 6.82704 6.91207 6.97900 7.01952 7.30827 7.52800 7.62660 7.68011 7.91704 7.97838 8.10135 8.28859 8.38137 8.84863 9.50622 10.96963 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029628 B = 0.001789 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.813686 B =15647.050485 C =15813.050220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.034 3.966 3 H 0.059 0.941 4 C 0.069 3.931 5 O -0.385 6.385 6 C 0.064 3.936 7 C 0.009 3.991 8 N -0.521 5.521 9 C 0.040 3.960 10 C 0.080 3.920 11 N -0.703 5.703 12 C 0.507 3.493 13 O -0.519 6.519 14 C 0.496 3.504 15 O -0.535 6.535 16 N -0.679 5.679 17 C 0.128 3.872 18 C 0.055 3.945 19 C -0.134 4.134 20 C -0.134 4.134 21 C -0.507 4.507 22 H 0.058 0.942 23 C 0.066 3.934 24 N -0.884 5.884 25 Si 0.895 3.105 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.413 0.587 43 H 0.411 0.589 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.008 0.992 47 H 0.087 0.913 48 H 0.027 0.973 49 H 0.027 0.973 50 H 0.087 0.913 51 H 0.008 0.992 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.255 -22.665 -14.956 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 H 0.077 0.923 4 C -0.008 4.008 5 O -0.303 6.303 6 C -0.013 4.013 7 C -0.119 4.119 8 N -0.245 5.245 9 C -0.089 4.089 10 C -0.046 4.046 11 N -0.358 5.358 12 C 0.288 3.712 13 O -0.394 6.394 14 C 0.275 3.725 15 O -0.414 6.414 16 N -0.331 5.331 17 C 0.006 3.994 18 C 0.055 3.945 19 C -0.191 4.191 20 C -0.191 4.191 21 C -0.545 4.545 22 H 0.077 0.923 23 C -0.136 4.136 24 N -0.522 5.522 25 Si 0.723 3.277 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.250 0.750 43 H 0.248 0.752 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.027 0.973 47 H 0.106 0.894 48 H 0.047 0.953 49 H 0.047 0.953 50 H 0.106 0.894 51 H 0.027 0.973 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.281 -22.851 -15.159 27.452 hybrid contribution -0.165 1.242 1.144 1.697 sum 1.116 -21.608 -14.015 25.780 Atomic orbital electron populations 1.21840 0.93114 1.02959 1.02634 1.22453 0.96744 0.97187 0.91027 0.92303 1.22726 0.80858 1.00326 0.96864 1.88013 1.20710 1.78523 1.43064 1.22669 0.99137 0.95593 0.83911 1.22916 0.87898 1.01051 1.00075 1.62562 1.08647 1.51770 1.01553 1.22494 1.02120 0.90849 0.93416 1.22182 1.00092 0.94593 0.87686 1.45599 1.55944 1.10241 1.24044 1.20537 0.80648 0.82689 0.87300 1.90760 1.38477 1.62827 1.47363 1.19922 0.82165 0.83939 0.86461 1.90725 1.40095 1.63083 1.47464 1.46230 1.52825 1.08792 1.25236 1.21955 0.98198 0.95748 0.83503 1.18388 0.93253 0.87241 0.95650 1.21859 0.97191 1.03698 0.96382 1.21857 0.98319 1.04115 0.94837 1.20936 1.34127 0.94845 1.04631 0.92343 1.24892 0.94897 0.97165 0.96615 1.69809 1.39236 1.08099 1.35095 0.86547 0.79342 0.78509 0.83314 1.20709 1.21254 1.19904 0.91820 0.91613 0.91422 0.92174 0.88345 0.88286 0.92197 0.89176 0.93125 0.88995 0.89427 0.91059 0.90825 0.75025 0.75182 0.91957 0.91957 0.97307 0.89416 0.95335 0.95334 0.89411 0.97294 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.89 37.16 0.33 -0.54 16 2 C 0.03 0.24 2.05 -67.60 -0.14 0.11 16 3 H 0.06 0.51 6.40 -51.93 -0.33 0.17 16 4 C 0.07 0.48 6.29 37.21 0.23 0.72 16 5 O -0.38 -3.42 10.83 -35.23 -0.38 -3.80 16 6 C 0.06 0.42 7.01 37.21 0.26 0.69 16 7 C 0.01 0.06 5.33 -3.71 -0.02 0.04 16 8 N -0.52 -3.67 4.75 -226.34 -1.07 -4.74 16 9 C 0.04 0.27 4.97 -3.82 -0.02 0.25 16 10 C 0.08 0.74 4.96 -4.04 -0.02 0.72 16 11 N -0.70 -7.87 5.55 -60.73 -0.34 -8.21 16 12 C 0.51 7.67 7.89 -11.58 -0.09 7.58 16 13 O -0.52 -9.01 16.48 5.50 0.09 -8.92 16 14 C 0.50 8.58 7.89 -11.58 -0.09 8.49 16 15 O -0.54 -10.03 16.48 5.50 0.09 -9.94 16 16 N -0.68 -12.55 4.95 -60.73 -0.30 -12.85 16 17 C 0.13 2.65 4.50 -4.05 -0.02 2.64 16 18 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 19 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 20 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 21 C -0.51 -13.08 8.01 -34.44 -0.28 -13.35 16 22 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 23 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 24 N -0.88 -23.51 9.35 55.43 0.52 -22.99 16 25 Si 0.89 20.54 29.54 -169.99 -5.02 15.51 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 37 H 0.05 0.40 6.59 -51.93 -0.34 0.06 16 38 H 0.09 0.57 6.40 -51.92 -0.33 0.24 16 39 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16 40 H 0.07 0.73 6.61 -51.93 -0.34 0.39 16 41 H 0.07 0.75 6.42 -51.93 -0.33 0.42 16 42 H 0.41 4.03 7.94 -40.82 -0.32 3.71 16 43 H 0.41 7.51 5.64 -40.82 -0.23 7.28 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 47 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 50 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 51 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 52 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -29.40 400.83 -8.32 -37.72 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -8.53 Total: 7.52 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 0.58 Total: 4.66 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -1.19 Total: -48.79 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.20 Total: -22.66 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.40 -8.32 -37.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422481111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.993 kcal (2) G-P(sol) polarization free energy of solvation -29.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds