Wall clock time and date at job start Wed Apr 1 2020 01:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.50703 * 2 1 4 4 C 1.53098 * 109.50313 * 239.86947 * 2 1 3 5 5 O 1.43015 * 109.29196 * 183.23929 * 4 2 1 6 6 C 1.43020 * 113.73974 * 58.60103 * 5 4 2 7 7 C 1.53095 * 109.29124 * 301.39847 * 6 5 4 8 8 N 1.47015 * 109.25739 * 56.82758 * 7 6 5 9 9 C 1.46904 * 110.99903 * 177.60628 * 8 7 6 10 10 C 1.52998 * 109.47022 * 66.04584 * 9 8 7 11 11 N 1.46503 * 109.46925 * 179.97438 * 10 9 8 12 12 C 1.34785 * 119.99547 * 179.97438 * 11 10 9 13 13 O 1.21346 * 120.00402 * 0.02562 * 12 11 10 14 14 C 1.49452 * 119.99620 * 179.97438 * 12 11 10 15 15 O 1.21351 * 120.00023 * 0.02562 * 14 12 11 16 16 N 1.34777 * 119.99996 * 179.97438 * 14 12 11 17 17 C 1.46495 * 120.00030 * 179.97438 * 16 14 12 18 18 C 1.52998 * 109.47355 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.47065 * 300.00500 * 18 17 16 20 20 C 1.52996 * 109.46800 * 60.00142 * 18 17 16 21 21 C 1.50700 * 109.47442 * 180.02562 * 18 17 16 22 22 H 1.07998 * 119.99657 * 0.02562 * 21 18 17 23 23 C 1.37874 * 120.00114 * 180.02562 * 21 18 17 24 24 N 1.31515 * 119.99870 * 359.97438 * 23 21 18 25 25 Si 1.86796 * 120.00209 * 179.97438 * 23 21 18 26 26 H 1.48502 * 109.47110 * 89.99900 * 25 23 21 27 27 H 1.48498 * 109.47462 * 209.99901 * 25 23 21 28 28 H 1.48503 * 109.47232 * 330.00404 * 25 23 21 29 29 H 1.09000 * 109.46852 * 299.91242 * 1 2 3 30 30 H 1.08998 * 109.47111 * 59.91475 * 1 2 3 31 31 H 1.08999 * 109.46939 * 179.91513 * 1 2 3 32 32 H 1.09009 * 109.50876 * 303.15024 * 4 2 1 33 33 H 1.08998 * 109.50857 * 63.23676 * 4 2 1 34 34 H 1.09002 * 109.50941 * 181.44210 * 6 5 4 35 35 H 1.09003 * 109.50633 * 61.35674 * 6 5 4 36 36 H 1.08994 * 109.50879 * 176.75932 * 7 6 5 37 37 H 1.08995 * 109.51088 * 296.88999 * 7 6 5 38 38 H 1.09007 * 109.46938 * 186.04003 * 9 8 7 39 39 H 1.08996 * 109.47276 * 306.04379 * 9 8 7 40 40 H 1.08998 * 109.47331 * 300.00067 * 10 9 8 41 41 H 1.09004 * 109.47482 * 60.00389 * 10 9 8 42 42 H 0.96994 * 119.99992 * 0.02562 * 11 10 9 43 43 H 0.97001 * 119.99747 * 0.02562 * 16 14 12 44 44 H 1.08998 * 109.47473 * 300.00873 * 17 16 14 45 45 H 1.09004 * 109.47220 * 60.00476 * 17 16 14 46 46 H 1.09000 * 109.47389 * 60.00076 * 19 18 17 47 47 H 1.09005 * 109.46843 * 179.97438 * 19 18 17 48 48 H 1.08996 * 109.47017 * 299.99674 * 19 18 17 49 49 H 1.09007 * 109.47446 * 60.00403 * 20 18 17 50 50 H 1.09005 * 109.47110 * 179.97438 * 20 18 17 51 51 H 1.08996 * 109.47763 * 300.00273 * 20 18 17 52 52 H 0.97006 * 119.99953 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2481 5 8 3.4693 -0.7881 -1.2059 6 6 3.9819 -1.4579 -0.0509 7 6 3.4904 -0.7410 1.2093 8 7 2.0210 -0.6948 1.1990 9 6 1.5056 -0.0635 2.4213 10 6 1.9159 1.4102 2.4462 11 7 1.4013 2.0398 3.6648 12 6 1.6421 3.3445 3.9025 13 8 2.2847 3.9977 3.1069 14 6 1.1167 3.9870 5.1454 15 8 0.4738 3.3339 5.9408 16 7 1.3579 5.2915 5.3833 17 6 0.8424 5.9214 6.6014 18 6 1.2535 7.3949 6.6267 19 6 2.7798 7.4990 6.6054 20 6 0.6766 8.1064 5.4013 21 6 0.7238 8.0427 7.8800 22 1 0.1515 7.4614 8.5879 23 6 0.9697 9.3774 8.1230 24 7 1.6670 10.0851 7.2612 25 14 0.3125 10.1806 9.6761 26 1 1.3171 10.0535 10.7623 27 1 0.0450 11.6178 9.4151 28 1 -0.9471 9.5091 10.0858 29 1 -0.3633 0.5125 0.8908 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6331 -1.7349 -1.2753 33 1 1.7266 -0.1808 -2.1390 34 1 5.0715 -1.4444 -0.0758 35 1 3.6308 -2.4899 -0.0429 36 1 3.8313 -1.2817 2.0921 37 1 3.8863 0.2744 1.2283 38 1 0.4182 -0.1382 2.4380 39 1 1.9180 -0.5703 3.2937 40 1 3.0032 1.4849 2.4294 41 1 1.5033 1.9171 1.5738 42 1 0.8881 1.5176 4.3009 43 1 1.8722 5.8134 4.7477 44 1 -0.2449 5.8475 6.6164 45 1 1.2531 5.4142 7.4745 46 1 3.1633 7.0304 5.6990 47 1 3.0726 8.5488 6.6230 48 1 3.1908 6.9921 7.4784 49 1 -0.4108 8.0323 5.4165 50 1 0.9691 9.1563 5.4196 51 1 1.0600 7.6378 4.4950 52 1 1.8397 11.0242 7.4320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422481111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:24 Heat of formation + Delta-G solvation = -133.868377 kcal Electronic energy + Delta-G solvation = -30328.868717 eV Core-core repulsion = 26134.675579 eV Total energy + Delta-G solvation = -4194.193138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81544 -40.96671 -39.76327 -38.21463 -37.73841 -35.83789 -34.92808 -33.59385 -32.75981 -30.96348 -28.64858 -27.91433 -27.60476 -27.32301 -26.80210 -24.69481 -23.82374 -23.53972 -21.56077 -20.79088 -20.64521 -19.56142 -18.16369 -17.79356 -17.70140 -17.26021 -17.09307 -16.84914 -16.54918 -16.54246 -16.14574 -15.95681 -15.74604 -15.30885 -15.02739 -14.80054 -14.74132 -14.62635 -14.29857 -14.05958 -13.61097 -13.29360 -13.22761 -13.14693 -13.00834 -12.84315 -12.82923 -12.71226 -12.66022 -12.59524 -12.29122 -12.19681 -12.12846 -11.86214 -11.52226 -11.49855 -11.31910 -10.81249 -10.68443 -10.63278 -10.42904 -10.40282 -10.14247 -9.47908 -8.02121 -6.18612 0.29733 1.27622 1.44050 1.47153 1.55135 2.09931 2.43558 2.55002 2.80449 2.94988 3.21751 3.43156 3.66689 3.73676 3.86133 3.95754 4.07111 4.16238 4.21922 4.32808 4.37754 4.41457 4.45973 4.63545 4.66264 4.69131 4.73176 4.80538 4.82433 4.89798 4.91009 4.94066 4.99610 5.02147 5.03822 5.09318 5.15473 5.19482 5.31119 5.46361 5.63128 5.66857 5.83705 5.86914 5.89075 6.09651 6.17463 6.17538 6.35035 6.40190 6.68947 6.85171 6.92755 7.49338 8.97109 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029628 B = 0.001789 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.813686 B =15647.050485 C =15813.050220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.034 3.966 3 H 0.041 0.959 4 C 0.067 3.933 5 O -0.409 6.409 6 C 0.061 3.939 7 C 0.008 3.992 8 N -0.519 5.519 9 C 0.047 3.953 10 C 0.084 3.916 11 N -0.682 5.682 12 C 0.513 3.487 13 O -0.544 6.544 14 C 0.499 3.501 15 O -0.548 6.548 16 N -0.681 5.681 17 C 0.143 3.857 18 C 0.049 3.951 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.524 4.524 22 H 0.052 0.948 23 C 0.024 3.976 24 N -0.901 5.901 25 Si 0.949 3.051 26 H -0.279 1.279 27 H -0.286 1.286 28 H -0.272 1.272 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.036 0.964 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.423 0.577 43 H 0.413 0.587 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.028 0.972 47 H 0.063 0.937 48 H 0.024 0.976 49 H 0.024 0.976 50 H 0.063 0.937 51 H 0.029 0.971 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 -24.473 -15.227 28.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.010 4.010 5 O -0.328 6.328 6 C -0.016 4.016 7 C -0.120 4.120 8 N -0.243 5.243 9 C -0.082 4.082 10 C -0.041 4.041 11 N -0.336 5.336 12 C 0.293 3.707 13 O -0.422 6.422 14 C 0.279 3.721 15 O -0.427 6.427 16 N -0.333 5.333 17 C 0.020 3.980 18 C 0.048 3.952 19 C -0.182 4.182 20 C -0.182 4.182 21 C -0.563 4.563 22 H 0.071 0.929 23 C -0.175 4.175 24 N -0.540 5.540 25 Si 0.776 3.224 26 H -0.205 1.205 27 H -0.212 1.212 28 H -0.197 1.197 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.054 0.946 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.261 0.739 43 H 0.250 0.750 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.082 0.918 48 H 0.043 0.957 49 H 0.043 0.957 50 H 0.082 0.918 51 H 0.047 0.953 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.890 -24.710 -15.437 29.149 hybrid contribution -0.038 1.727 1.187 2.096 sum 0.852 -22.983 -14.249 27.055 Atomic orbital electron populations 1.21812 0.92077 1.03393 1.02829 1.22454 0.97533 0.96173 0.91268 0.94137 1.22829 0.80141 1.00845 0.97146 1.87980 1.21742 1.78958 1.44087 1.22803 0.99860 0.95700 0.83188 1.22960 0.87718 1.00451 1.00874 1.62627 1.08830 1.51314 1.01538 1.22519 1.02845 0.88881 0.93915 1.22302 0.99537 0.96049 0.86242 1.45546 1.54617 1.08861 1.24563 1.20082 0.80711 0.83725 0.86206 1.90761 1.39924 1.63646 1.47834 1.20266 0.81475 0.83356 0.86997 1.90717 1.40572 1.63265 1.48176 1.46082 1.53202 1.09434 1.24599 1.21562 0.97710 0.94365 0.84350 1.18394 0.93328 0.88599 0.94835 1.21708 0.97063 1.02183 0.97213 1.21705 0.98048 1.02709 0.95701 1.21227 1.34198 0.95235 1.05601 0.92949 1.25518 0.95279 0.97745 0.98984 1.69930 1.39800 1.08103 1.36152 0.85696 0.78744 0.77553 0.80423 1.20546 1.21155 1.19713 0.92168 0.90932 0.90791 0.91442 0.87541 0.87197 0.91443 0.87667 0.94612 0.87939 0.88075 0.91776 0.91565 0.73884 0.74979 0.92593 0.92583 0.95268 0.91811 0.95711 0.95693 0.91808 0.95254 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.89 71.98 0.64 -0.81 16 2 C 0.03 0.44 2.05 44.93 0.09 0.54 16 3 H 0.04 0.68 6.40 -2.39 -0.02 0.66 16 4 C 0.07 0.85 6.29 72.01 0.45 1.31 16 5 O -0.41 -6.91 10.83 -148.98 -1.61 -8.53 16 6 C 0.06 0.73 7.01 72.01 0.50 1.23 16 7 C 0.01 0.10 5.33 86.31 0.46 0.55 16 8 N -0.52 -6.36 4.75 -870.01 -4.13 -10.49 16 9 C 0.05 0.53 4.97 86.30 0.43 0.96 16 10 C 0.08 1.42 4.96 86.38 0.43 1.85 16 11 N -0.68 -14.04 5.55 -464.40 -2.58 -16.62 16 12 C 0.51 14.82 7.89 87.27 0.69 15.51 16 13 O -0.54 -18.37 16.48 -3.23 -0.05 -18.42 16 14 C 0.50 16.66 7.89 87.27 0.69 17.35 16 15 O -0.55 -19.81 16.48 -3.25 -0.05 -19.86 16 16 N -0.68 -24.54 4.95 -464.42 -2.30 -26.84 16 17 C 0.14 5.87 4.50 86.38 0.39 6.26 16 18 C 0.05 2.27 0.50 -52.93 -0.03 2.24 16 19 C -0.12 -5.63 8.08 71.98 0.58 -5.05 16 20 C -0.12 -5.62 8.08 71.98 0.58 -5.04 16 21 C -0.52 -27.09 8.01 25.60 0.21 -26.88 16 22 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 23 C 0.02 1.28 5.15 84.65 0.44 1.71 16 24 N -0.90 -48.27 9.35 21.45 0.20 -48.06 16 25 Si 0.95 42.11 29.54 68.60 2.03 44.14 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 29 H 0.06 0.65 6.43 -2.39 -0.02 0.64 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.11 0.94 8.12 -2.39 -0.02 0.92 16 37 H 0.04 0.54 6.59 -2.39 -0.02 0.53 16 38 H 0.10 0.99 6.40 -2.38 -0.02 0.97 16 39 H 0.10 0.92 8.11 -2.39 -0.02 0.90 16 40 H 0.06 1.24 6.61 -2.39 -0.02 1.22 16 41 H 0.07 1.29 6.42 -2.39 -0.02 1.27 16 42 H 0.42 7.27 7.94 -92.71 -0.74 6.53 16 43 H 0.41 14.65 5.64 -92.71 -0.52 14.13 16 44 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.03 1.16 6.86 -2.39 -0.02 1.15 16 47 H 0.06 3.22 6.07 -2.38 -0.01 3.21 16 48 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 50 H 0.06 3.22 6.07 -2.38 -0.01 3.21 16 51 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 52 H 0.26 13.43 8.31 -92.70 -0.77 12.66 16 Total: -1.00 -61.87 400.83 -2.27 -64.14 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.32 Total: 28.81 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 6.55 Total: 11.73 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -8.81 Total: -102.01 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -1.72 Total: -46.81 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -61.87 -2.27 -64.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422481111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.730 kcal (2) G-P(sol) polarization free energy of solvation -61.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds