Wall clock time and date at job start Wed Apr 1 2020 01:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.54056 * 2 1 4 4 C 1.53090 * 109.50635 * 120.11318 * 2 1 3 5 5 O 1.43017 * 109.26104 * 176.78334 * 4 2 1 6 6 C 1.43020 * 113.73326 * 301.32998 * 5 4 2 7 7 C 1.53092 * 109.25888 * 58.66988 * 6 5 4 8 8 N 1.47012 * 109.50312 * 239.89485 * 2 1 3 9 9 C 1.46902 * 111.00270 * 57.67271 * 8 2 1 10 10 C 1.53004 * 109.47126 * 189.67715 * 9 8 2 11 11 N 1.46504 * 109.46928 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99854 * 179.97438 * 11 10 9 13 13 O 1.21353 * 119.99804 * 0.02562 * 12 11 10 14 14 C 1.49445 * 120.00110 * 180.02562 * 12 11 10 15 15 O 1.21353 * 119.99618 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00114 * 180.02562 * 14 12 11 17 17 C 1.46498 * 119.99828 * 180.27895 * 16 14 12 18 18 C 1.52996 * 109.47059 * 179.72339 * 17 16 14 19 19 C 1.53010 * 109.47146 * 299.99645 * 18 17 16 20 20 C 1.53000 * 109.47166 * 59.99736 * 18 17 16 21 21 C 1.50697 * 109.47491 * 179.97438 * 18 17 16 22 22 H 1.08002 * 119.99965 * 359.97438 * 21 18 17 23 23 C 1.37877 * 120.00490 * 179.97438 * 21 18 17 24 24 N 1.31514 * 119.99545 * 359.97438 * 23 21 18 25 25 Si 1.86796 * 120.00173 * 179.97438 * 23 21 18 26 26 H 1.48497 * 109.47199 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47080 * 119.99932 * 25 23 21 28 28 H 1.48498 * 109.47127 * 239.99826 * 25 23 21 29 29 H 1.08997 * 109.47578 * 180.10405 * 1 2 3 30 30 H 1.09003 * 109.47226 * 300.10698 * 1 2 3 31 31 H 1.09001 * 109.47367 * 60.10371 * 1 2 3 32 32 H 1.09002 * 109.50796 * 56.84621 * 4 2 1 33 33 H 1.09007 * 109.50593 * 296.71471 * 4 2 1 34 34 H 1.08994 * 109.50432 * 298.73068 * 6 5 4 35 35 H 1.09005 * 109.49895 * 178.60125 * 6 5 4 36 36 H 1.09002 * 109.50961 * 183.21481 * 7 6 5 37 37 H 1.09001 * 109.54593 * 63.10817 * 7 6 5 38 38 H 1.09006 * 109.46860 * 69.67958 * 9 8 2 39 39 H 1.08997 * 109.46952 * 309.67977 * 9 8 2 40 40 H 1.09007 * 109.46621 * 60.00045 * 10 9 8 41 41 H 1.08997 * 109.46991 * 300.00297 * 10 9 8 42 42 H 0.97000 * 119.99819 * 0.02562 * 11 10 9 43 43 H 0.97001 * 119.99727 * 359.97438 * 16 14 12 44 44 H 1.09004 * 109.46963 * 299.72135 * 17 16 14 45 45 H 1.08994 * 109.47567 * 59.72287 * 17 16 14 46 46 H 1.09003 * 109.46863 * 59.99870 * 19 18 17 47 47 H 1.09001 * 109.47172 * 179.97438 * 19 18 17 48 48 H 1.09000 * 109.46753 * 300.00454 * 19 18 17 49 49 H 1.08990 * 109.47258 * 60.00092 * 20 18 17 50 50 H 1.09001 * 109.46739 * 180.02562 * 20 18 17 51 51 H 1.08999 * 109.47407 * 299.99599 * 20 18 17 52 52 H 0.97004 * 119.99855 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7240 1.2483 5 8 3.4693 -0.7868 1.2056 6 6 3.9817 -1.4579 0.0512 7 6 3.4902 -0.7413 -1.2092 8 7 2.0208 -0.6951 -1.1988 9 6 1.5053 -0.0643 -2.4213 10 6 1.8333 -0.9464 -3.6277 11 7 1.3186 -0.3176 -4.8467 12 6 1.4927 -0.9189 -6.0402 13 8 2.0753 -1.9815 -6.1050 14 6 0.9682 -0.2773 -7.2838 15 8 0.3860 0.7855 -7.2190 16 7 1.1418 -0.8789 -8.4773 17 6 0.6330 -0.2468 -9.6971 18 6 0.9658 -1.1262 -10.9040 19 6 2.4830 -1.2930 -11.0108 20 6 0.3128 -2.4990 -10.7304 21 6 0.4419 -0.4765 -12.1587 22 1 -0.0769 0.4690 -12.1011 23 6 0.6248 -1.0889 -13.3804 24 7 1.2571 -2.2400 -13.4507 25 14 -0.0252 -0.2838 -14.9355 26 1 -0.6928 0.9964 -14.5883 27 1 1.1029 -0.0173 -15.8637 28 1 -1.0020 -1.1901 -15.5911 29 1 -0.3634 -1.0276 0.0019 30 1 -0.3634 0.5155 0.8890 31 1 -0.3634 0.5122 -0.8909 32 1 1.6331 -1.7344 1.2758 33 1 1.7273 -0.1795 2.1390 34 1 3.6301 -2.4895 0.0440 35 1 5.0714 -1.4442 0.0762 36 1 3.8311 -1.2824 -2.0919 37 1 3.8862 0.2740 -1.2293 38 1 1.9698 0.9135 -2.5492 39 1 0.4248 0.0544 -2.3410 40 1 1.3688 -1.9242 -3.4997 41 1 2.9138 -1.0651 -3.7079 42 1 0.8532 0.5319 -4.7949 43 1 1.6076 -1.7282 -8.5291 44 1 -0.4478 -0.1281 -9.6210 45 1 1.0982 0.7311 -9.8208 46 1 2.8616 -1.7632 -10.1032 47 1 2.7200 -1.9199 -11.8704 48 1 2.9481 -0.3150 -11.1345 49 1 -0.7679 -2.3802 -10.6543 50 1 0.5503 -3.1256 -11.5901 51 1 0.6914 -2.9693 -9.8229 52 1 1.3861 -2.6707 -14.3102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422481112.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:28 Heat of formation + Delta-G solvation = -112.099197 kcal Electronic energy + Delta-G solvation = -29969.422183 eV Core-core repulsion = 25776.173027 eV Total energy + Delta-G solvation = -4193.249156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.56109 -40.16555 -38.42717 -36.90902 -36.49167 -34.98402 -33.36668 -33.05331 -30.90529 -30.30664 -27.95208 -26.94327 -25.99217 -25.73553 -25.23565 -23.47793 -23.20336 -22.07627 -20.66060 -20.11593 -19.01927 -18.25851 -17.18788 -16.82524 -16.46583 -16.20728 -15.97456 -15.81605 -15.49503 -15.35133 -14.94408 -14.78320 -14.73224 -14.40005 -14.05062 -13.84505 -13.44123 -13.22262 -12.94945 -12.71877 -12.69053 -12.47094 -12.34678 -12.23834 -11.95441 -11.66678 -11.50198 -11.41721 -11.26071 -11.20285 -10.99056 -10.90705 -10.68554 -10.41623 -10.21431 -10.08820 -9.66849 -9.57228 -9.36859 -9.25745 -8.94082 -8.80834 -8.62570 -8.38858 -6.04010 -4.14709 1.62462 2.42133 3.23858 3.25942 3.34748 3.38769 3.41054 3.44597 3.95807 4.19751 4.30704 4.38008 4.40293 4.57655 4.64549 4.70614 4.77846 4.81873 4.91838 4.97690 5.12295 5.16044 5.22726 5.22734 5.33772 5.37155 5.44194 5.49740 5.60123 5.70950 6.05575 6.09498 6.21671 6.41034 6.41770 6.45386 6.60817 6.66898 6.80497 6.83783 6.92373 6.98933 7.04953 7.31859 7.53791 7.64456 7.69281 7.93937 7.98744 8.11200 8.30245 8.39274 8.85721 9.51249 10.97434 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033692 B = 0.001679 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.859198 B =16675.170362 C =17099.161516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 H 0.052 0.948 4 C 0.069 3.931 5 O -0.386 6.386 6 C 0.063 3.937 7 C 0.011 3.989 8 N -0.528 5.528 9 C 0.038 3.962 10 C 0.121 3.879 11 N -0.707 5.707 12 C 0.509 3.491 13 O -0.518 6.518 14 C 0.496 3.504 15 O -0.536 6.536 16 N -0.679 5.679 17 C 0.128 3.872 18 C 0.055 3.945 19 C -0.133 4.133 20 C -0.133 4.133 21 C -0.506 4.506 22 H 0.059 0.941 23 C 0.066 3.934 24 N -0.884 5.884 25 Si 0.894 3.106 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.412 0.588 43 H 0.411 0.589 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.008 0.992 47 H 0.087 0.913 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.087 0.913 51 H 0.008 0.992 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 2.363 27.607 27.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 H 0.070 0.930 4 C -0.008 4.008 5 O -0.305 6.305 6 C -0.014 4.014 7 C -0.117 4.117 8 N -0.254 5.254 9 C -0.090 4.090 10 C -0.002 4.002 11 N -0.362 5.362 12 C 0.290 3.710 13 O -0.393 6.393 14 C 0.275 3.725 15 O -0.415 6.415 16 N -0.331 5.331 17 C 0.006 3.994 18 C 0.054 3.946 19 C -0.191 4.191 20 C -0.191 4.191 21 C -0.545 4.545 22 H 0.077 0.923 23 C -0.136 4.136 24 N -0.522 5.522 25 Si 0.722 3.278 26 H -0.198 1.198 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.248 0.752 43 H 0.248 0.752 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.027 0.973 47 H 0.106 0.894 48 H 0.046 0.954 49 H 0.047 0.953 50 H 0.106 0.894 51 H 0.027 0.973 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.079 1.792 27.600 27.736 hybrid contribution -0.186 1.163 -1.170 1.660 sum 1.893 2.955 26.430 26.662 Atomic orbital electron populations 1.21876 0.93197 1.03194 1.02414 1.22326 0.96571 0.96581 0.90881 0.93026 1.22727 0.80932 1.00484 0.96673 1.87998 1.20668 1.78485 1.43313 1.22686 0.99132 0.95773 0.83761 1.22929 0.87718 1.00802 1.00250 1.62112 1.08597 1.53250 1.01440 1.22356 1.01873 0.95799 0.88974 1.21341 0.99863 0.97131 0.81907 1.45622 1.58708 1.26029 1.05808 1.20461 0.80295 0.85228 0.85013 1.90764 1.40427 1.21347 1.86762 1.19933 0.81806 0.85762 0.84975 1.90724 1.42224 1.21778 1.86737 1.46227 1.55513 1.25189 1.06170 1.21949 0.98225 0.97043 0.82169 1.18399 0.93386 0.92127 0.90690 1.21857 0.96958 1.00116 1.00181 1.21852 0.98128 0.99310 0.99814 1.20980 1.36587 1.06472 0.90435 0.92298 1.24891 0.94915 0.94855 0.98908 1.69819 1.41576 1.16008 1.24826 0.86497 0.78634 0.79498 0.83135 1.19769 1.21065 1.21052 0.91284 0.91646 0.91794 0.92027 0.88398 0.91975 0.88232 0.88897 0.93612 0.93694 0.88997 0.90002 0.91066 0.75235 0.75159 0.91963 0.91991 0.97275 0.89418 0.95353 0.95332 0.89439 0.97263 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 8.92 37.16 0.33 -0.42 16 2 C 0.04 0.29 2.59 -67.60 -0.17 0.11 16 3 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 4 C 0.07 0.44 6.29 37.20 0.23 0.67 16 5 O -0.39 -3.24 10.83 -35.23 -0.38 -3.62 16 6 C 0.06 0.43 7.01 37.21 0.26 0.69 16 7 C 0.01 0.08 5.43 -3.71 -0.02 0.06 16 8 N -0.53 -3.80 4.54 -226.34 -1.03 -4.83 16 9 C 0.04 0.27 4.85 -3.82 -0.02 0.25 16 10 C 0.12 1.12 5.60 -4.04 -0.02 1.10 16 11 N -0.71 -7.92 5.55 -60.72 -0.34 -8.26 16 12 C 0.51 7.63 7.89 -11.59 -0.09 7.54 16 13 O -0.52 -8.84 16.48 5.49 0.09 -8.75 16 14 C 0.50 8.56 7.89 -11.59 -0.09 8.47 16 15 O -0.54 -10.07 16.48 5.49 0.09 -9.98 16 16 N -0.68 -12.51 4.95 -60.73 -0.30 -12.81 16 17 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16 18 C 0.05 1.26 0.50 -155.66 -0.08 1.18 16 19 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 20 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 21 C -0.51 -13.05 8.01 -34.44 -0.28 -13.33 16 22 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 23 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 24 N -0.88 -23.47 9.35 55.43 0.52 -22.96 16 25 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.33 6.17 -51.93 -0.32 0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.62 6.37 -51.93 -0.33 0.29 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 39 H 0.09 0.59 5.77 -51.93 -0.30 0.29 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.68 6.51 -51.93 -0.34 0.34 16 42 H 0.41 4.08 7.94 -40.82 -0.32 3.75 16 43 H 0.41 7.47 5.64 -40.82 -0.23 7.24 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 46 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 47 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 51 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 52 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 404.11 15.07 6.09 6.09 Total: -1.00 -29.24 404.11 -8.38 -37.62 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.65 Total: 6.87 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 0.54 Total: 5.11 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -1.15 Total: -48.85 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.20 Total: -22.35 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.24 -8.38 -37.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422481112.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.475 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds