Wall clock time and date at job start Wed Apr 1 2020 01:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.54056 * 2 1 4 4 C 1.53090 * 109.50635 * 120.11318 * 2 1 3 5 5 O 1.43017 * 109.26104 * 176.78334 * 4 2 1 6 6 C 1.43020 * 113.73326 * 301.32998 * 5 4 2 7 7 C 1.53092 * 109.25888 * 58.66988 * 6 5 4 8 8 N 1.47012 * 109.50312 * 239.89485 * 2 1 3 9 9 C 1.46902 * 111.00270 * 57.67271 * 8 2 1 10 10 C 1.53004 * 109.47126 * 189.67715 * 9 8 2 11 11 N 1.46504 * 109.46928 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99854 * 179.97438 * 11 10 9 13 13 O 1.21353 * 119.99804 * 0.02562 * 12 11 10 14 14 C 1.49445 * 120.00110 * 180.02562 * 12 11 10 15 15 O 1.21353 * 119.99618 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00114 * 180.02562 * 14 12 11 17 17 C 1.46498 * 119.99828 * 180.27895 * 16 14 12 18 18 C 1.52996 * 109.47059 * 179.72339 * 17 16 14 19 19 C 1.53010 * 109.47146 * 299.99645 * 18 17 16 20 20 C 1.53000 * 109.47166 * 59.99736 * 18 17 16 21 21 C 1.50697 * 109.47491 * 179.97438 * 18 17 16 22 22 H 1.08002 * 119.99965 * 359.97438 * 21 18 17 23 23 C 1.37877 * 120.00490 * 179.97438 * 21 18 17 24 24 N 1.31514 * 119.99545 * 359.97438 * 23 21 18 25 25 Si 1.86796 * 120.00173 * 179.97438 * 23 21 18 26 26 H 1.48497 * 109.47199 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47080 * 119.99932 * 25 23 21 28 28 H 1.48498 * 109.47127 * 239.99826 * 25 23 21 29 29 H 1.08997 * 109.47578 * 180.10405 * 1 2 3 30 30 H 1.09003 * 109.47226 * 300.10698 * 1 2 3 31 31 H 1.09001 * 109.47367 * 60.10371 * 1 2 3 32 32 H 1.09002 * 109.50796 * 56.84621 * 4 2 1 33 33 H 1.09007 * 109.50593 * 296.71471 * 4 2 1 34 34 H 1.08994 * 109.50432 * 298.73068 * 6 5 4 35 35 H 1.09005 * 109.49895 * 178.60125 * 6 5 4 36 36 H 1.09002 * 109.50961 * 183.21481 * 7 6 5 37 37 H 1.09001 * 109.54593 * 63.10817 * 7 6 5 38 38 H 1.09006 * 109.46860 * 69.67958 * 9 8 2 39 39 H 1.08997 * 109.46952 * 309.67977 * 9 8 2 40 40 H 1.09007 * 109.46621 * 60.00045 * 10 9 8 41 41 H 1.08997 * 109.46991 * 300.00297 * 10 9 8 42 42 H 0.97000 * 119.99819 * 0.02562 * 11 10 9 43 43 H 0.97001 * 119.99727 * 359.97438 * 16 14 12 44 44 H 1.09004 * 109.46963 * 299.72135 * 17 16 14 45 45 H 1.08994 * 109.47567 * 59.72287 * 17 16 14 46 46 H 1.09003 * 109.46863 * 59.99870 * 19 18 17 47 47 H 1.09001 * 109.47172 * 179.97438 * 19 18 17 48 48 H 1.09000 * 109.46753 * 300.00454 * 19 18 17 49 49 H 1.08990 * 109.47258 * 60.00092 * 20 18 17 50 50 H 1.09001 * 109.46739 * 180.02562 * 20 18 17 51 51 H 1.08999 * 109.47407 * 299.99599 * 20 18 17 52 52 H 0.97004 * 119.99855 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7240 1.2483 5 8 3.4693 -0.7868 1.2056 6 6 3.9817 -1.4579 0.0512 7 6 3.4902 -0.7413 -1.2092 8 7 2.0208 -0.6951 -1.1988 9 6 1.5053 -0.0643 -2.4213 10 6 1.8333 -0.9464 -3.6277 11 7 1.3186 -0.3176 -4.8467 12 6 1.4927 -0.9189 -6.0402 13 8 2.0753 -1.9815 -6.1050 14 6 0.9682 -0.2773 -7.2838 15 8 0.3860 0.7855 -7.2190 16 7 1.1418 -0.8789 -8.4773 17 6 0.6330 -0.2468 -9.6971 18 6 0.9658 -1.1262 -10.9040 19 6 2.4830 -1.2930 -11.0108 20 6 0.3128 -2.4990 -10.7304 21 6 0.4419 -0.4765 -12.1587 22 1 -0.0769 0.4690 -12.1011 23 6 0.6248 -1.0889 -13.3804 24 7 1.2571 -2.2400 -13.4507 25 14 -0.0252 -0.2838 -14.9355 26 1 -0.6928 0.9964 -14.5883 27 1 1.1029 -0.0173 -15.8637 28 1 -1.0020 -1.1901 -15.5911 29 1 -0.3634 -1.0276 0.0019 30 1 -0.3634 0.5155 0.8890 31 1 -0.3634 0.5122 -0.8909 32 1 1.6331 -1.7344 1.2758 33 1 1.7273 -0.1795 2.1390 34 1 3.6301 -2.4895 0.0440 35 1 5.0714 -1.4442 0.0762 36 1 3.8311 -1.2824 -2.0919 37 1 3.8862 0.2740 -1.2293 38 1 1.9698 0.9135 -2.5492 39 1 0.4248 0.0544 -2.3410 40 1 1.3688 -1.9242 -3.4997 41 1 2.9138 -1.0651 -3.7079 42 1 0.8532 0.5319 -4.7949 43 1 1.6076 -1.7282 -8.5291 44 1 -0.4478 -0.1281 -9.6210 45 1 1.0982 0.7311 -9.8208 46 1 2.8616 -1.7632 -10.1032 47 1 2.7200 -1.9199 -11.8704 48 1 2.9481 -0.3150 -11.1345 49 1 -0.7679 -2.3802 -10.6543 50 1 0.5503 -3.1256 -11.5901 51 1 0.6914 -2.9693 -9.8229 52 1 1.3861 -2.6707 -14.3102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422481112.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:27 Heat of formation + Delta-G solvation = -133.703016 kcal Electronic energy + Delta-G solvation = -29970.358995 eV Core-core repulsion = 25776.173027 eV Total energy + Delta-G solvation = -4194.185967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74437 -40.82779 -39.75439 -38.19717 -37.59359 -35.94961 -34.95279 -33.62737 -32.74619 -31.03714 -28.60551 -27.91469 -27.58717 -27.35231 -26.91630 -24.68467 -23.71617 -22.91411 -21.59760 -21.00185 -20.70209 -19.65054 -18.12249 -17.81126 -17.49122 -17.25018 -17.15943 -16.76578 -16.57072 -16.45404 -16.19757 -15.94783 -15.67706 -15.32214 -15.04328 -14.91493 -14.75940 -14.50762 -14.30156 -14.04172 -13.77848 -13.22041 -13.17900 -13.14018 -13.01500 -12.84904 -12.80442 -12.71227 -12.55953 -12.51397 -12.28110 -12.15136 -12.11901 -11.84053 -11.50861 -11.50058 -11.30412 -10.78998 -10.67516 -10.58954 -10.41635 -10.35475 -10.12400 -9.48819 -8.01490 -6.17769 0.33318 1.28251 1.43174 1.47659 1.56699 2.13474 2.42135 2.51673 2.88492 2.95625 3.22475 3.46397 3.64014 3.77716 3.87604 3.99018 4.14812 4.19155 4.27607 4.34365 4.35632 4.46633 4.47345 4.64818 4.67543 4.67933 4.76282 4.79080 4.83272 4.88969 4.92381 4.93069 5.04016 5.04293 5.05662 5.11618 5.17251 5.21483 5.31424 5.48098 5.64829 5.68045 5.85831 5.87594 5.93433 6.11296 6.16264 6.19038 6.37616 6.41438 6.72017 6.86562 6.95407 7.50199 8.97930 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033692 B = 0.001679 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.859198 B =16675.170362 C =17099.161516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 H 0.046 0.954 4 C 0.066 3.934 5 O -0.406 6.406 6 C 0.062 3.938 7 C 0.011 3.989 8 N -0.535 5.535 9 C 0.046 3.954 10 C 0.124 3.876 11 N -0.687 5.687 12 C 0.515 3.485 13 O -0.540 6.540 14 C 0.498 3.502 15 O -0.551 6.551 16 N -0.681 5.681 17 C 0.143 3.857 18 C 0.048 3.952 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.523 4.523 22 H 0.052 0.948 23 C 0.025 3.975 24 N -0.901 5.901 25 Si 0.948 3.052 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.283 1.283 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.420 0.580 43 H 0.413 0.587 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.029 0.971 47 H 0.063 0.937 48 H 0.023 0.977 49 H 0.024 0.976 50 H 0.063 0.937 51 H 0.030 0.970 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 2.892 29.098 29.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.062 4.062 3 H 0.064 0.936 4 C -0.011 4.011 5 O -0.325 6.325 6 C -0.015 4.015 7 C -0.117 4.117 8 N -0.261 5.261 9 C -0.082 4.082 10 C 0.001 3.999 11 N -0.340 5.340 12 C 0.295 3.705 13 O -0.418 6.418 14 C 0.279 3.721 15 O -0.430 6.430 16 N -0.333 5.333 17 C 0.020 3.980 18 C 0.048 3.952 19 C -0.181 4.181 20 C -0.181 4.181 21 C -0.562 4.562 22 H 0.070 0.930 23 C -0.175 4.175 24 N -0.540 5.540 25 Si 0.775 3.225 26 H -0.196 1.196 27 H -0.210 1.210 28 H -0.209 1.209 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.258 0.742 43 H 0.251 0.749 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.048 0.952 47 H 0.082 0.918 48 H 0.043 0.957 49 H 0.043 0.957 50 H 0.082 0.918 51 H 0.048 0.952 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.796 2.342 29.133 29.283 hybrid contribution -0.099 1.013 -1.547 1.852 sum 1.696 3.355 27.587 27.842 Atomic orbital electron populations 1.21857 0.92109 1.03169 1.03159 1.22355 0.97385 0.96088 0.90417 0.93561 1.22862 0.80094 1.00778 0.97352 1.87970 1.21785 1.78734 1.43984 1.22771 0.99884 0.95546 0.83274 1.22928 0.87689 1.00597 1.00441 1.62122 1.08733 1.53539 1.01706 1.22273 1.02547 0.95328 0.88070 1.21432 0.99658 0.97210 0.81601 1.45566 1.57332 1.25877 1.05272 1.19961 0.80415 0.84972 0.85112 1.90765 1.41790 1.22247 1.86950 1.20300 0.81077 0.85386 0.85358 1.90716 1.42741 1.22445 1.87061 1.46076 1.55905 1.25324 1.06007 1.21550 0.97747 0.96265 0.82399 1.18407 0.93473 0.92493 0.90871 1.21704 0.96809 0.99502 1.00117 1.21699 0.97882 0.98834 0.99708 1.21260 1.36689 1.06417 0.91835 0.93011 1.25506 0.95291 0.95393 1.01282 1.69935 1.42099 1.16709 1.25221 0.85652 0.77991 0.78658 0.80160 1.19618 1.20964 1.20939 0.91635 0.90291 0.91704 0.92028 0.86932 0.92009 0.87060 0.88746 0.94029 0.93212 0.88002 0.90540 0.91101 0.74229 0.74901 0.92638 0.92678 0.95158 0.91819 0.95749 0.95721 0.91841 0.95153 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.92 71.98 0.64 -0.53 16 2 C 0.05 0.51 2.59 44.92 0.12 0.62 16 3 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 4 C 0.07 0.75 6.29 72.01 0.45 1.20 16 5 O -0.41 -6.37 10.83 -148.98 -1.61 -7.98 16 6 C 0.06 0.77 7.01 72.01 0.50 1.27 16 7 C 0.01 0.14 5.43 86.31 0.47 0.61 16 8 N -0.53 -6.84 4.54 -870.01 -3.95 -10.79 16 9 C 0.05 0.56 4.85 86.30 0.42 0.97 16 10 C 0.12 2.06 5.60 86.38 0.48 2.54 16 11 N -0.69 -14.06 5.55 -464.39 -2.58 -16.64 16 12 C 0.52 14.64 7.89 87.27 0.69 15.33 16 13 O -0.54 -17.68 16.48 -3.26 -0.05 -17.74 16 14 C 0.50 16.56 7.89 87.27 0.69 17.25 16 15 O -0.55 -19.94 16.48 -3.26 -0.05 -20.00 16 16 N -0.68 -24.37 4.95 -464.42 -2.30 -26.66 16 17 C 0.14 5.87 4.50 86.38 0.39 6.26 16 18 C 0.05 2.22 0.50 -52.93 -0.03 2.19 16 19 C -0.12 -5.58 8.08 71.99 0.58 -5.00 16 20 C -0.12 -5.58 8.08 71.98 0.58 -5.00 16 21 C -0.52 -27.04 8.01 25.60 0.21 -26.84 16 22 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 23 C 0.02 1.30 5.15 84.65 0.44 1.74 16 24 N -0.90 -48.12 9.35 21.45 0.20 -47.92 16 25 Si 0.95 42.09 29.54 68.60 2.03 44.12 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 28 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.52 6.17 -2.39 -0.01 0.50 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.09 1.14 6.37 -2.39 -0.02 1.13 16 37 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.05 0.58 8.12 -2.38 -0.02 0.56 16 39 H 0.10 1.06 5.77 -2.39 -0.01 1.05 16 40 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.07 1.24 6.51 -2.39 -0.02 1.22 16 42 H 0.42 7.39 7.94 -92.71 -0.74 6.65 16 43 H 0.41 14.48 5.64 -92.71 -0.52 13.96 16 44 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 45 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.03 1.19 6.86 -2.39 -0.02 1.18 16 47 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 48 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 51 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 52 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 Total: -1.00 -61.10 404.11 -2.01 -63.11 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -0.32 Total: 27.86 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 6.63 Total: 12.63 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -8.62 Total: -102.01 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -1.72 Total: -45.72 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -61.10 -2.01 -63.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422481112.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.589 kcal (2) G-P(sol) polarization free energy of solvation -61.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds