Wall clock time and date at job start Wed Apr 1 2020 01:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34235 * 116.99995 * 2 1 4 4 O 1.20823 * 120.00182 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99961 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.46848 * 179.97438 * 5 3 2 7 7 N 1.46905 * 109.47076 * 180.02562 * 6 5 3 8 8 C 1.46907 * 110.99766 * 293.95125 * 7 6 5 9 9 C 1.53230 * 109.34088 * 172.74534 * 8 7 6 10 10 N 1.47080 * 108.52136 * 53.83131 * 9 8 7 11 11 C 1.34782 * 120.88577 * 128.83839 * 10 9 8 12 12 O 1.21279 * 120.00179 * 184.59119 * 11 10 9 13 13 C 1.50698 * 119.99475 * 4.58976 * 11 10 9 14 14 H 1.09002 * 109.47602 * 40.00598 * 13 11 10 15 15 N 1.46904 * 109.46968 * 160.00597 * 13 11 10 16 16 C 1.53002 * 109.47288 * 280.00046 * 13 11 10 17 17 C 1.53003 * 109.47133 * 175.00154 * 16 13 11 18 18 C 1.50703 * 109.47235 * 180.02562 * 17 16 13 19 19 H 1.08009 * 119.99698 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00288 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99767 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00121 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46677 * 60.00423 * 22 20 18 24 24 H 1.48498 * 109.46899 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47219 * 300.00334 * 22 20 18 26 26 C 1.47081 * 118.23486 * 308.81381 * 10 9 8 27 27 H 1.09006 * 109.62790 * 291.27543 * 26 10 9 28 28 C 1.53009 * 109.62695 * 170.89559 * 26 10 9 29 29 C 1.46955 * 110.97355 * 169.44899 * 7 6 5 30 30 H 1.09007 * 109.46812 * 300.00208 * 1 2 3 31 31 H 1.08995 * 109.47346 * 60.00023 * 1 2 3 32 32 H 1.08997 * 109.47027 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47289 * 59.99297 * 5 3 2 34 34 H 1.09004 * 109.46974 * 299.99404 * 5 3 2 35 35 H 1.08998 * 109.47653 * 59.99638 * 6 5 3 36 36 H 1.08997 * 109.47060 * 299.99134 * 6 5 3 37 37 H 1.09004 * 109.49269 * 52.78267 * 8 7 6 38 38 H 1.09004 * 109.51064 * 292.71887 * 8 7 6 39 39 H 1.09002 * 109.63422 * 294.12026 * 9 8 7 40 40 H 1.09002 * 109.63196 * 173.53723 * 9 8 7 41 41 H 1.00907 * 110.99403 * 296.04513 * 15 13 11 42 42 H 1.00893 * 111.00269 * 59.99566 * 15 13 11 43 43 H 1.08996 * 109.47432 * 295.00250 * 16 13 11 44 44 H 1.09004 * 109.46840 * 55.00245 * 16 13 11 45 45 H 1.08996 * 109.47039 * 300.00336 * 17 16 13 46 46 H 1.09004 * 109.47183 * 60.00300 * 17 16 13 47 47 H 0.96997 * 120.00044 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.46836 * 66.40571 * 28 26 10 49 49 H 1.08995 * 109.46714 * 186.39856 * 28 26 10 50 50 H 1.08998 * 109.46817 * 306.40365 * 28 26 10 51 51 H 1.08999 * 109.34003 * 67.20445 * 29 7 6 52 52 H 1.09007 * 109.66382 * 307.11025 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4671 2.8190 -0.0023 8 6 6.0229 2.2907 1.2507 9 6 7.5495 2.2200 1.1387 10 7 8.0511 3.5457 0.7461 11 6 9.0406 4.1440 1.4385 12 8 9.3851 5.2712 1.1527 13 6 9.7189 3.4123 2.5679 14 1 9.8637 2.3684 2.2895 15 7 11.0228 4.0320 2.8397 16 6 8.8463 3.4893 3.8224 17 6 9.4731 2.6431 4.9323 18 6 8.6134 2.7185 6.1678 19 1 7.7099 3.3104 6.1617 20 6 8.9794 2.0310 7.3054 21 7 10.0792 1.3099 7.3127 22 14 7.9141 2.1250 8.8370 23 1 6.5562 1.6095 8.5277 24 1 8.5218 1.3026 9.9138 25 1 7.8170 3.5370 9.2866 26 6 7.4445 4.2011 -0.4227 27 1 7.7154 3.6584 -1.3284 28 6 7.9439 5.6441 -0.5195 29 6 5.9215 4.1937 -0.2541 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.9557 0.7809 -0.8907 34 1 3.9564 0.7807 0.8892 35 1 3.6106 3.2365 0.8888 36 1 3.6101 3.2359 -0.8911 37 1 5.6249 1.2924 1.4328 38 1 5.7488 2.9478 2.0762 39 1 7.8277 1.4849 0.3835 40 1 7.9747 1.9383 2.1020 41 1 11.6404 3.9368 2.0475 42 1 10.9154 5.0008 3.1001 43 1 8.7746 4.5257 4.1521 44 1 7.8497 3.1105 3.5955 45 1 9.5448 1.6067 4.6026 46 1 10.4697 3.0220 5.1592 47 1 10.3366 0.8260 8.1129 48 1 9.0115 5.6451 -0.7391 49 1 7.4087 6.1610 -1.3160 50 1 7.7671 6.1540 0.4275 51 1 5.6459 4.8254 0.5904 52 1 5.4532 4.5744 -1.1618 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424164339.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:33 Heat of formation + Delta-G solvation = -129.911900 kcal Electronic energy + Delta-G solvation = -31050.429334 eV Core-core repulsion = 26856.407761 eV Total energy + Delta-G solvation = -4194.021572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.81946 -41.48086 -39.39646 -37.64734 -37.05118 -36.11972 -34.90937 -33.63520 -32.47367 -31.92757 -29.64233 -28.60220 -28.07822 -26.74154 -25.45661 -24.66615 -23.20375 -22.46983 -21.79817 -21.34747 -19.89239 -18.80712 -18.45077 -18.06343 -17.73721 -17.65183 -17.30882 -16.74178 -16.56756 -16.37367 -16.23503 -15.80256 -15.75115 -15.33819 -14.95826 -14.90186 -14.38675 -14.26651 -14.20183 -13.88250 -13.72999 -13.54745 -13.48614 -13.34452 -13.22340 -12.85787 -12.78007 -12.67370 -12.51842 -12.41615 -12.36806 -12.23704 -12.04139 -11.85545 -11.76087 -11.67874 -11.59269 -11.44596 -11.14677 -10.58330 -10.45173 -9.79642 -9.48101 -9.35282 -8.12845 -6.22930 1.14196 1.41703 1.43977 1.50947 1.53115 1.66996 1.95294 2.44679 2.81032 3.20145 3.44609 3.64835 3.66176 3.78682 3.87528 3.95480 4.04385 4.10068 4.19449 4.22551 4.28424 4.30143 4.31802 4.33430 4.33790 4.52412 4.60416 4.66592 4.70297 4.72635 4.76221 4.80944 4.85351 4.90673 4.93413 4.98572 5.14157 5.25373 5.30956 5.37483 5.57584 5.61034 5.84556 5.85449 5.89665 5.99660 6.11835 6.31146 6.37966 6.52791 6.68560 6.95226 7.12643 7.45043 8.97993 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007522 B = 0.003188 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3721.560557 B = 8781.635350 C =11883.834515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.465 3.535 4 O -0.544 6.544 5 C -0.105 4.105 6 C 0.071 3.929 7 N -0.528 5.528 8 C 0.035 3.965 9 C 0.103 3.897 10 N -0.607 5.607 11 C 0.488 3.512 12 O -0.567 6.567 13 C 0.084 3.916 14 H 0.107 0.893 15 N -0.818 5.818 16 C -0.080 4.080 17 C 0.043 3.957 18 C -0.543 4.543 19 H 0.053 0.947 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.955 3.045 23 H -0.266 1.266 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.146 3.854 27 H 0.093 0.907 28 C -0.125 4.125 29 C 0.051 3.949 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.122 0.878 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.024 0.976 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.346 0.654 42 H 0.344 0.656 43 H 0.036 0.964 44 H 0.065 0.935 45 H -0.003 1.003 46 H 0.004 0.996 47 H 0.262 0.738 48 H 0.057 0.943 49 H 0.066 0.934 50 H 0.041 0.959 51 H 0.022 0.978 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.579 -2.706 -21.312 25.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.309 3.691 4 O -0.435 6.435 5 C -0.143 4.143 6 C -0.057 4.057 7 N -0.252 5.252 8 C -0.094 4.094 9 C -0.019 4.019 10 N -0.340 5.340 11 C 0.275 3.725 12 O -0.447 6.447 13 C -0.032 4.032 14 H 0.125 0.875 15 N -0.347 5.347 16 C -0.118 4.118 17 C 0.006 3.994 18 C -0.581 4.581 19 H 0.071 0.929 20 C -0.193 4.193 21 N -0.568 5.568 22 Si 0.780 3.220 23 H -0.190 1.190 24 H -0.209 1.209 25 H -0.199 1.199 26 C 0.043 3.957 27 H 0.111 0.889 28 C -0.183 4.183 29 C -0.078 4.078 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.140 0.860 35 H 0.046 0.954 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.043 0.957 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.055 0.945 44 H 0.084 0.916 45 H 0.016 0.984 46 H 0.022 0.978 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.085 0.915 50 H 0.060 0.940 51 H 0.040 0.960 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.281 -2.779 -21.139 25.661 hybrid contribution -1.097 1.363 1.082 2.057 sum -15.378 -1.417 -20.056 25.313 Atomic orbital electron populations 1.23520 0.74988 1.05618 1.02385 1.86510 1.24854 1.32971 1.83660 1.24162 0.92928 0.81005 0.70983 1.90675 1.68298 1.37428 1.47077 1.21387 0.85511 0.98964 1.08428 1.21783 0.86673 0.95175 1.02023 1.61900 1.08048 1.21043 1.34239 1.22634 0.94664 1.02103 0.89972 1.22120 0.93538 0.83621 1.02624 1.48396 1.35812 1.19993 1.29828 1.22299 0.79846 0.86737 0.83625 1.90698 1.65842 1.19296 1.68841 1.21662 0.90094 0.99144 0.92305 0.87509 1.58995 1.10420 1.22926 1.42379 1.21410 0.97395 0.99695 0.93332 1.18792 0.95328 0.93599 0.91700 1.21668 1.08886 1.29040 0.98539 0.92923 1.25837 0.96400 0.95080 1.01950 1.70086 1.24993 1.31931 1.29760 0.85660 0.79231 0.78143 0.78946 1.19038 1.20866 1.19905 1.21457 0.91593 0.94362 0.88246 0.88871 1.21981 1.01129 0.94156 1.01032 1.22551 0.94813 0.88642 1.01760 0.92377 0.91819 0.85206 0.84335 0.86016 0.95378 0.89443 0.86604 0.95714 0.88162 0.89008 0.84067 0.84261 0.94503 0.91642 0.98433 0.97773 0.92903 0.92428 0.91550 0.94027 0.95989 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.36 -5.74 10.57 -51.47 -0.54 -6.28 16 3 C 0.46 8.16 7.96 71.24 0.57 8.73 16 4 O -0.54 -13.09 15.73 21.97 0.35 -12.74 16 5 C -0.11 -1.29 5.75 29.85 0.17 -1.12 16 6 C 0.07 1.13 4.25 86.30 0.37 1.50 16 7 N -0.53 -8.76 4.62 -895.11 -4.14 -12.89 16 8 C 0.03 0.64 5.47 86.38 0.47 1.11 16 9 C 0.10 2.11 5.93 86.35 0.51 2.62 16 10 N -0.61 -14.83 3.01 -794.09 -2.39 -17.22 16 11 C 0.49 14.86 6.85 87.66 0.60 15.46 16 12 O -0.57 -19.57 11.76 -3.03 -0.04 -19.61 16 13 C 0.08 2.75 2.29 44.17 0.10 2.85 16 14 H 0.11 3.29 7.10 -2.39 -0.02 3.27 16 15 N -0.82 -27.61 8.44 -171.79 -1.45 -29.06 16 16 C -0.08 -3.19 4.41 30.60 0.13 -3.06 16 17 C 0.04 2.19 4.86 29.85 0.15 2.34 16 18 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 19 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 20 C 0.01 0.31 5.46 84.65 0.46 0.77 16 21 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 22 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 26 C 0.15 3.06 3.64 44.96 0.16 3.22 16 27 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 28 C -0.13 -2.97 7.62 71.99 0.55 -2.42 16 29 C 0.05 0.94 4.92 86.37 0.43 1.37 16 30 H 0.06 0.72 8.13 -2.38 -0.02 0.70 16 31 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 32 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.14 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.12 1.24 6.41 -2.39 -0.02 1.23 16 35 H 0.03 0.56 8.08 -2.39 -0.02 0.54 16 36 H 0.09 1.37 7.92 -2.39 -0.02 1.35 16 37 H 0.12 1.60 6.18 -2.39 -0.01 1.58 16 38 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.09 2.16 4.66 -2.39 -0.01 2.15 16 41 H 0.35 10.01 9.06 -89.69 -0.81 9.20 16 42 H 0.34 11.94 8.58 -89.70 -0.77 11.17 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 2.42 6.57 -2.38 -0.02 2.40 16 45 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.00 0.22 7.75 -2.38 -0.02 0.20 16 47 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 48 H 0.06 1.56 6.76 -2.39 -0.02 1.55 16 49 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.04 1.22 6.80 -2.39 -0.02 1.21 16 51 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 52 H 0.11 1.55 7.99 -2.38 -0.02 1.53 16 Total: -1.00 -72.42 406.82 -0.45 -72.87 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.65 Total: 29.78 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 6.10 Total: 4.67 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -7.69 Total: -114.73 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.23 Total: -38.63 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.42 -0.45 -72.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424164339.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.040 kcal (2) G-P(sol) polarization free energy of solvation -72.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds