Wall clock time and date at job start Wed Apr 1 2020 01:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 116.99902 * 2 1 4 4 O 1.20823 * 120.00095 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00095 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47331 * 180.02562 * 5 3 2 7 7 N 1.46904 * 109.47224 * 179.97438 * 6 5 3 8 8 C 1.46893 * 111.00260 * 293.95626 * 7 6 5 9 9 C 1.53234 * 109.34139 * 187.25324 * 8 7 6 10 10 N 1.47088 * 108.52060 * 306.16731 * 9 8 7 11 11 C 1.34775 * 120.88026 * 231.18798 * 10 9 8 12 12 O 1.21283 * 119.99626 * 175.37068 * 11 10 9 13 13 C 1.50703 * 119.99996 * 355.36760 * 11 10 9 14 14 H 1.08993 * 109.47126 * 319.99803 * 13 11 10 15 15 N 1.46904 * 109.46544 * 200.00043 * 13 11 10 16 16 C 1.52994 * 109.47191 * 80.00351 * 13 11 10 17 17 C 1.52994 * 109.47388 * 184.99632 * 16 13 11 18 18 C 1.50707 * 109.47414 * 179.97438 * 17 16 13 19 19 H 1.07998 * 119.99656 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99823 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00304 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99625 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47278 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47308 * 120.00337 * 22 20 18 25 25 H 1.48504 * 109.47263 * 239.99902 * 22 20 18 26 26 C 1.47070 * 118.23434 * 51.46154 * 10 9 8 27 27 H 1.09002 * 109.63234 * 68.25025 * 26 10 9 28 28 C 1.53002 * 109.62930 * 188.83107 * 26 10 9 29 29 C 1.46903 * 110.99898 * 58.25542 * 7 6 5 30 30 H 1.08995 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46882 * 299.99504 * 1 2 3 32 32 H 1.08995 * 109.47591 * 59.99601 * 1 2 3 33 33 H 1.09002 * 109.46956 * 60.00403 * 5 3 2 34 34 H 1.09002 * 109.47208 * 300.00292 * 5 3 2 35 35 H 1.09002 * 109.46913 * 60.00203 * 6 5 3 36 36 H 1.09000 * 109.47351 * 299.99759 * 6 5 3 37 37 H 1.09007 * 109.49520 * 67.29319 * 8 7 6 38 38 H 1.08998 * 109.49331 * 307.21115 * 8 7 6 39 39 H 1.09004 * 109.62818 * 186.46273 * 9 8 7 40 40 H 1.09001 * 109.79447 * 65.97581 * 9 8 7 41 41 H 1.00894 * 111.00585 * 300.00158 * 15 13 11 42 42 H 1.00903 * 111.00252 * 63.96009 * 15 13 11 43 43 H 1.09008 * 109.47380 * 64.99789 * 16 13 11 44 44 H 1.09003 * 109.47150 * 305.00089 * 16 13 11 45 45 H 1.09003 * 109.47349 * 300.00336 * 17 16 13 46 46 H 1.08999 * 109.47273 * 59.99930 * 17 16 13 47 47 H 0.97001 * 120.00298 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.46899 * 53.68737 * 28 26 10 49 49 H 1.08998 * 109.47461 * 173.69025 * 28 26 10 50 50 H 1.08994 * 109.47237 * 293.69277 * 28 26 10 51 51 H 1.08994 * 109.49562 * 292.70933 * 29 7 6 52 52 H 1.09004 * 109.48908 * 52.76022 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4671 2.8190 0.0002 8 6 6.0220 2.2899 1.2532 9 6 7.5312 2.5524 1.2906 10 7 8.1313 2.0047 0.0645 11 6 9.1946 1.1787 0.1240 12 8 9.6246 0.6698 -0.8894 13 6 9.8491 0.8874 1.4498 14 1 9.8920 1.8012 2.0424 15 7 11.2113 0.3861 1.2236 16 6 9.0349 -0.1689 2.1995 17 6 9.6275 -0.3741 3.5950 18 6 8.8251 -1.4141 4.3336 19 1 7.9774 -1.8822 3.8553 20 6 9.1731 -1.7680 5.6200 21 7 10.2050 -1.1976 6.2025 22 14 8.1780 -3.0566 6.5357 23 1 7.0761 -3.5412 5.6662 24 1 9.0586 -4.1958 6.8993 25 1 7.6088 -2.4577 7.7697 26 6 7.5440 2.3874 -1.2285 27 1 7.7291 3.4450 -1.4161 28 6 8.1669 1.5467 -2.3448 29 6 6.0306 2.1266 -1.1664 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 3.9556 0.7811 -0.8909 34 1 3.9564 0.7806 0.8891 35 1 3.6107 3.2356 0.8907 36 1 3.6100 3.2369 -0.8893 37 1 5.8380 1.2169 1.3080 38 1 5.5457 2.7847 2.0995 39 1 7.9666 2.0626 2.1617 40 1 7.7181 3.6250 1.3423 41 1 11.1986 -0.4612 0.6760 42 1 11.7879 1.0899 0.7874 43 1 9.0661 -1.1096 1.6496 44 1 8.0013 0.1653 2.2892 45 1 10.6612 -0.7083 3.5053 46 1 9.5963 0.5665 4.1449 47 1 10.4496 -1.4463 7.1076 48 1 8.0695 0.4889 -2.1004 49 1 7.6528 1.7514 -3.2839 50 1 9.2220 1.8007 -2.4453 51 1 5.8464 1.0560 -1.0780 52 1 5.5601 2.5028 -2.0749 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424164341.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:38 Heat of formation + Delta-G solvation = -105.628363 kcal Electronic energy + Delta-G solvation = -31396.210843 eV Core-core repulsion = 27203.242284 eV Total energy + Delta-G solvation = -4192.968559 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97829 -40.56623 -38.57844 -36.87858 -35.60427 -35.19681 -33.02026 -32.48159 -31.49583 -30.12984 -28.69332 -27.78711 -26.44995 -26.22794 -23.93493 -23.70335 -22.20388 -21.61167 -20.58991 -20.19567 -18.63084 -18.06510 -17.09014 -16.97436 -16.95064 -16.43323 -16.08330 -15.64877 -15.49672 -15.25271 -14.98894 -14.62984 -14.49489 -14.37394 -14.04574 -13.62833 -13.41320 -13.16591 -13.13649 -12.83855 -12.51806 -12.41933 -12.34400 -12.23845 -12.03126 -11.99194 -11.58755 -11.49272 -11.44739 -11.19781 -11.13600 -11.04173 -10.92566 -10.83614 -10.59466 -10.52940 -9.84621 -9.61624 -9.29257 -9.00038 -8.89351 -8.46725 -8.33495 -8.12860 -5.96688 -3.98993 1.84790 2.35654 2.74508 2.96059 3.31287 3.39373 3.42397 3.56391 4.37049 4.44942 4.47614 4.50451 4.60447 4.74259 4.74622 4.75966 4.83297 4.92593 4.98633 4.99237 5.15127 5.16229 5.20615 5.22382 5.38926 5.41285 5.41726 5.50754 5.53268 5.63561 5.68113 5.71008 5.79413 5.82714 6.02648 6.09627 6.27123 6.39455 6.56240 6.61199 6.65175 6.73265 7.04365 7.36586 7.38075 7.53018 7.72915 7.79063 7.92835 8.10194 8.30070 8.45113 9.09196 9.64491 11.14132 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007476 B = 0.003506 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3744.667043 B = 7985.348798 C =10913.833084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.468 3.532 4 O -0.508 6.508 5 C -0.159 4.159 6 C 0.070 3.930 7 N -0.530 5.530 8 C 0.033 3.967 9 C 0.106 3.894 10 N -0.611 5.611 11 C 0.486 3.514 12 O -0.546 6.546 13 C 0.075 3.925 14 H 0.097 0.903 15 N -0.807 5.807 16 C -0.096 4.096 17 C 0.032 3.968 18 C -0.522 4.522 19 H 0.052 0.948 20 C 0.059 3.941 21 N -0.891 5.891 22 Si 0.887 3.113 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.285 1.285 26 C 0.147 3.853 27 H 0.076 0.924 28 C -0.134 4.134 29 C 0.037 3.963 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.347 0.653 42 H 0.334 0.666 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.035 0.965 46 H 0.013 0.987 47 H 0.259 0.741 48 H 0.070 0.930 49 H 0.040 0.960 50 H 0.074 0.926 51 H 0.045 0.955 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.602 8.701 -15.458 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.310 3.690 4 O -0.396 6.396 5 C -0.198 4.198 6 C -0.058 4.058 7 N -0.252 5.252 8 C -0.095 4.095 9 C -0.017 4.017 10 N -0.346 5.346 11 C 0.274 3.726 12 O -0.425 6.425 13 C -0.041 4.041 14 H 0.114 0.886 15 N -0.334 5.334 16 C -0.134 4.134 17 C -0.005 4.005 18 C -0.560 4.560 19 H 0.070 0.930 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.715 3.285 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.211 1.211 26 C 0.043 3.957 27 H 0.094 0.906 28 C -0.192 4.192 29 C -0.091 4.091 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.161 0.839 42 H 0.145 0.855 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.059 0.941 50 H 0.093 0.907 51 H 0.063 0.937 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.295 9.137 -15.053 22.065 hybrid contribution -1.377 -1.360 -0.306 1.960 sum -14.673 7.777 -15.359 22.620 Atomic orbital electron populations 1.23280 0.76175 1.03833 1.02560 1.86541 1.23621 1.33549 1.83949 1.23669 0.91941 0.81336 0.72042 1.90675 1.67280 1.36264 1.45355 1.22273 0.88193 1.02906 1.06461 1.22108 0.86995 0.91883 1.04824 1.62254 1.04677 1.55603 1.02705 1.22605 0.95418 0.99160 0.92333 1.21986 0.92092 0.99937 0.87728 1.48357 1.31449 1.47915 1.06873 1.22682 0.79476 0.76956 0.93458 1.90689 1.64426 1.51067 1.36270 1.21885 0.89968 1.01026 0.91175 0.88557 1.59006 1.08685 1.09307 1.56447 1.21698 0.96864 0.95369 0.99480 1.19015 0.97261 0.96522 0.87747 1.21292 1.13548 1.22338 0.98834 0.93020 1.24979 0.95160 0.96426 0.97684 1.69977 1.26574 1.42679 1.13821 0.86625 0.80230 0.81817 0.79824 1.19900 1.21045 1.21090 1.21419 0.91041 0.99310 0.83935 0.90626 1.22142 1.01144 1.00922 0.94950 1.22768 0.95260 0.97219 0.93864 0.88018 0.91767 0.91897 0.87466 0.87163 0.89269 0.89477 0.93355 0.88865 0.87614 0.90591 0.83895 0.85476 0.92922 0.92891 0.94677 0.96902 0.93129 0.91123 0.94084 0.90749 0.93685 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.57 10.57 -39.26 -0.41 -3.99 16 3 C 0.47 4.77 7.96 36.00 0.29 5.06 16 4 O -0.51 -6.27 15.73 -18.75 -0.29 -6.56 16 5 C -0.16 -1.34 5.12 -27.88 -0.14 -1.48 16 6 C 0.07 0.60 4.64 -3.82 -0.02 0.58 16 7 N -0.53 -4.93 4.83 -234.02 -1.13 -6.06 16 8 C 0.03 0.33 5.16 -3.71 -0.02 0.31 16 9 C 0.11 1.17 5.92 -3.60 -0.02 1.15 16 10 N -0.61 -7.66 3.00 -164.65 -0.49 -8.16 16 11 C 0.49 7.32 6.85 -10.98 -0.08 7.25 16 12 O -0.55 -9.17 11.76 5.56 0.07 -9.11 16 13 C 0.08 1.22 2.29 -68.86 -0.16 1.06 16 14 H 0.10 1.50 7.10 -51.93 -0.37 1.13 16 15 N -0.81 -13.24 8.44 -5.66 -0.05 -13.28 16 16 C -0.10 -1.85 4.41 -26.74 -0.12 -1.96 16 17 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 18 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 19 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 22 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.15 1.62 3.67 -67.26 -0.25 1.37 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 C -0.13 -1.59 7.62 37.16 0.28 -1.31 16 29 C 0.04 0.35 4.26 -3.46 -0.01 0.34 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 33 H 0.11 0.82 6.54 -51.93 -0.34 0.48 16 34 H 0.11 0.94 6.72 -51.93 -0.35 0.59 16 35 H 0.09 0.79 8.00 -51.93 -0.42 0.38 16 36 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.05 0.53 6.83 -51.93 -0.35 0.17 16 38 H 0.09 0.82 8.04 -51.93 -0.42 0.41 16 39 H 0.11 1.30 4.66 -51.93 -0.24 1.06 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.35 5.77 8.58 -39.29 -0.34 5.44 16 42 H 0.33 4.77 9.06 -39.29 -0.36 4.42 16 43 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 44 H 0.05 0.95 6.57 -51.93 -0.34 0.61 16 45 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.07 1.00 6.79 -51.93 -0.35 0.64 16 49 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 1.01 6.76 -51.93 -0.35 0.66 16 51 H 0.04 0.46 6.70 -51.93 -0.35 0.11 16 52 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 LS Contribution 403.86 15.07 6.09 6.09 Total: -1.00 -32.57 403.86 -8.98 -41.55 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -8.74 Total: 7.60 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 0.28 Total: 1.25 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.94 Total: -53.15 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.64 Total: -19.66 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.57 -8.98 -41.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424164341.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.077 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds