Wall clock time and date at job start Wed Apr 1 2020 01:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 116.99902 * 2 1 4 4 O 1.20823 * 120.00095 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00095 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47331 * 180.02562 * 5 3 2 7 7 N 1.46904 * 109.47224 * 179.97438 * 6 5 3 8 8 C 1.46893 * 111.00260 * 293.95626 * 7 6 5 9 9 C 1.53234 * 109.34139 * 187.25324 * 8 7 6 10 10 N 1.47088 * 108.52060 * 306.16731 * 9 8 7 11 11 C 1.34775 * 120.88026 * 231.18798 * 10 9 8 12 12 O 1.21283 * 119.99626 * 175.37068 * 11 10 9 13 13 C 1.50703 * 119.99996 * 355.36760 * 11 10 9 14 14 H 1.08993 * 109.47126 * 319.99803 * 13 11 10 15 15 N 1.46904 * 109.46544 * 200.00043 * 13 11 10 16 16 C 1.52994 * 109.47191 * 80.00351 * 13 11 10 17 17 C 1.52994 * 109.47388 * 184.99632 * 16 13 11 18 18 C 1.50707 * 109.47414 * 179.97438 * 17 16 13 19 19 H 1.07998 * 119.99656 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99823 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00304 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99625 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47278 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47308 * 120.00337 * 22 20 18 25 25 H 1.48504 * 109.47263 * 239.99902 * 22 20 18 26 26 C 1.47070 * 118.23434 * 51.46154 * 10 9 8 27 27 H 1.09002 * 109.63234 * 68.25025 * 26 10 9 28 28 C 1.53002 * 109.62930 * 188.83107 * 26 10 9 29 29 C 1.46903 * 110.99898 * 58.25542 * 7 6 5 30 30 H 1.08995 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46882 * 299.99504 * 1 2 3 32 32 H 1.08995 * 109.47591 * 59.99601 * 1 2 3 33 33 H 1.09002 * 109.46956 * 60.00403 * 5 3 2 34 34 H 1.09002 * 109.47208 * 300.00292 * 5 3 2 35 35 H 1.09002 * 109.46913 * 60.00203 * 6 5 3 36 36 H 1.09000 * 109.47351 * 299.99759 * 6 5 3 37 37 H 1.09007 * 109.49520 * 67.29319 * 8 7 6 38 38 H 1.08998 * 109.49331 * 307.21115 * 8 7 6 39 39 H 1.09004 * 109.62818 * 186.46273 * 9 8 7 40 40 H 1.09001 * 109.79447 * 65.97581 * 9 8 7 41 41 H 1.00894 * 111.00585 * 300.00158 * 15 13 11 42 42 H 1.00903 * 111.00252 * 63.96009 * 15 13 11 43 43 H 1.09008 * 109.47380 * 64.99789 * 16 13 11 44 44 H 1.09003 * 109.47150 * 305.00089 * 16 13 11 45 45 H 1.09003 * 109.47349 * 300.00336 * 17 16 13 46 46 H 1.08999 * 109.47273 * 59.99930 * 17 16 13 47 47 H 0.97001 * 120.00298 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.46899 * 53.68737 * 28 26 10 49 49 H 1.08998 * 109.47461 * 173.69025 * 28 26 10 50 50 H 1.08994 * 109.47237 * 293.69277 * 28 26 10 51 51 H 1.08994 * 109.49562 * 292.70933 * 29 7 6 52 52 H 1.09004 * 109.48908 * 52.76022 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4671 2.8190 0.0002 8 6 6.0220 2.2899 1.2532 9 6 7.5312 2.5524 1.2906 10 7 8.1313 2.0047 0.0645 11 6 9.1946 1.1787 0.1240 12 8 9.6246 0.6698 -0.8894 13 6 9.8491 0.8874 1.4498 14 1 9.8920 1.8012 2.0424 15 7 11.2113 0.3861 1.2236 16 6 9.0349 -0.1689 2.1995 17 6 9.6275 -0.3741 3.5950 18 6 8.8251 -1.4141 4.3336 19 1 7.9774 -1.8822 3.8553 20 6 9.1731 -1.7680 5.6200 21 7 10.2050 -1.1976 6.2025 22 14 8.1780 -3.0566 6.5357 23 1 7.0761 -3.5412 5.6662 24 1 9.0586 -4.1958 6.8993 25 1 7.6088 -2.4577 7.7697 26 6 7.5440 2.3874 -1.2285 27 1 7.7291 3.4450 -1.4161 28 6 8.1669 1.5467 -2.3448 29 6 6.0306 2.1266 -1.1664 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 3.9556 0.7811 -0.8909 34 1 3.9564 0.7806 0.8891 35 1 3.6107 3.2356 0.8907 36 1 3.6100 3.2369 -0.8893 37 1 5.8380 1.2169 1.3080 38 1 5.5457 2.7847 2.0995 39 1 7.9666 2.0626 2.1617 40 1 7.7181 3.6250 1.3423 41 1 11.1986 -0.4612 0.6760 42 1 11.7879 1.0899 0.7874 43 1 9.0661 -1.1096 1.6496 44 1 8.0013 0.1653 2.2892 45 1 10.6612 -0.7083 3.5053 46 1 9.5963 0.5665 4.1449 47 1 10.4496 -1.4463 7.1076 48 1 8.0695 0.4889 -2.1004 49 1 7.6528 1.7514 -3.2839 50 1 9.2220 1.8007 -2.4453 51 1 5.8464 1.0560 -1.0780 52 1 5.5601 2.5028 -2.0749 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424164341.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:36 Heat of formation + Delta-G solvation = -128.920965 kcal Electronic energy + Delta-G solvation = -31397.220886 eV Core-core repulsion = 27203.242284 eV Total energy + Delta-G solvation = -4193.978602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.88034 -41.49885 -39.50943 -37.67314 -37.03650 -36.18046 -34.89547 -33.54953 -32.28047 -31.91429 -29.53412 -28.50108 -28.06289 -27.07374 -25.49303 -24.59352 -23.22162 -22.57952 -21.99803 -21.23526 -19.74144 -18.82769 -18.44653 -18.04395 -17.78635 -17.68496 -17.32032 -16.72616 -16.53401 -16.47257 -16.24357 -15.79149 -15.43832 -15.40622 -14.98247 -14.88821 -14.44802 -14.24457 -14.07864 -13.92439 -13.78134 -13.65675 -13.42516 -13.30364 -13.21826 -12.91834 -12.90047 -12.80285 -12.48722 -12.38325 -12.31749 -12.12057 -12.02127 -11.88824 -11.77013 -11.66314 -11.63351 -11.44135 -11.10715 -10.57073 -10.44808 -9.78685 -9.46392 -9.31017 -8.12089 -6.21907 1.07630 1.41859 1.43366 1.53360 1.55589 1.70098 1.94453 2.45457 2.79676 3.21347 3.45854 3.65154 3.68111 3.78428 3.81803 3.93162 3.97388 4.11188 4.11661 4.23060 4.23958 4.25662 4.29036 4.32966 4.36433 4.42889 4.61309 4.66776 4.70147 4.72838 4.74256 4.80131 4.86591 4.94511 4.97379 5.04106 5.16414 5.27292 5.31827 5.33316 5.59550 5.62915 5.86562 5.88858 5.93621 6.00872 6.13329 6.32067 6.39175 6.53577 6.62961 6.96983 7.14093 7.46274 8.99188 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007476 B = 0.003506 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3744.667043 B = 7985.348798 C =10913.833084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.469 3.531 4 O -0.533 6.533 5 C -0.153 4.153 6 C 0.077 3.923 7 N -0.527 5.527 8 C 0.035 3.965 9 C 0.103 3.897 10 N -0.606 5.606 11 C 0.489 3.511 12 O -0.565 6.565 13 C 0.082 3.918 14 H 0.104 0.896 15 N -0.819 5.819 16 C -0.079 4.079 17 C 0.041 3.959 18 C -0.539 4.539 19 H 0.055 0.945 20 C 0.004 3.996 21 N -0.929 5.929 22 Si 0.956 3.044 23 H -0.264 1.264 24 H -0.283 1.283 25 H -0.278 1.278 26 C 0.144 3.856 27 H 0.087 0.913 28 C -0.124 4.124 29 C 0.042 3.958 30 H 0.126 0.874 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.345 0.655 42 H 0.345 0.655 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.003 0.997 46 H -0.005 1.005 47 H 0.261 0.739 48 H 0.045 0.955 49 H 0.066 0.934 50 H 0.054 0.946 51 H 0.039 0.961 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.490 9.002 -16.200 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.313 3.687 4 O -0.423 6.423 5 C -0.192 4.192 6 C -0.052 4.052 7 N -0.250 5.250 8 C -0.093 4.093 9 C -0.019 4.019 10 N -0.339 5.339 11 C 0.276 3.724 12 O -0.445 6.445 13 C -0.033 4.033 14 H 0.121 0.879 15 N -0.348 5.348 16 C -0.117 4.117 17 C 0.004 3.996 18 C -0.577 4.577 19 H 0.073 0.927 20 C -0.194 4.194 21 N -0.569 5.569 22 Si 0.781 3.219 23 H -0.188 1.188 24 H -0.209 1.209 25 H -0.203 1.203 26 C 0.041 3.959 27 H 0.105 0.895 28 C -0.182 4.182 29 C -0.087 4.087 30 H 0.144 0.856 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.022 0.978 46 H 0.013 0.987 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.085 0.915 50 H 0.073 0.927 51 H 0.057 0.943 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.211 9.453 -15.807 23.888 hybrid contribution -0.807 -1.432 -0.093 1.646 sum -16.018 8.021 -15.901 23.953 Atomic orbital electron populations 1.23530 0.74786 1.05558 1.02641 1.86532 1.25136 1.33401 1.83665 1.23944 0.92485 0.81063 0.71206 1.90663 1.67952 1.36992 1.46690 1.22258 0.87082 1.02953 1.06904 1.22045 0.86263 0.91896 1.04946 1.62258 1.05106 1.55316 1.02281 1.22586 0.94597 0.98827 0.93321 1.22083 0.92751 1.00580 0.86525 1.48378 1.30455 1.46867 1.08215 1.22255 0.80143 0.77571 0.92398 1.90701 1.65212 1.52105 1.36521 1.21666 0.89629 1.00096 0.91937 0.87855 1.58987 1.09201 1.09768 1.56820 1.21400 0.97823 0.95967 0.96520 1.18808 0.95517 0.94835 0.90426 1.21727 1.13797 1.22815 0.99350 0.92661 1.25852 0.96220 0.98595 0.98767 1.70105 1.28247 1.44303 1.14289 0.85544 0.78834 0.78935 0.78586 1.18781 1.20889 1.20334 1.21568 0.92002 0.99607 0.82679 0.89525 1.21970 1.00351 0.99399 0.96492 1.22744 0.94034 0.97049 0.94838 0.85559 0.91945 0.91600 0.86469 0.87166 0.89504 0.89060 0.94291 0.87509 0.88986 0.89003 0.84182 0.84147 0.94226 0.91441 0.97839 0.98668 0.92991 0.93560 0.91512 0.92743 0.94272 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.37 -6.85 10.57 -51.42 -0.54 -7.39 16 3 C 0.47 8.94 7.96 71.23 0.57 9.51 16 4 O -0.53 -12.57 15.73 21.97 0.35 -12.23 16 5 C -0.15 -2.29 5.12 29.85 0.15 -2.14 16 6 C 0.08 1.14 4.64 86.30 0.40 1.54 16 7 N -0.53 -8.47 4.83 -894.31 -4.32 -12.79 16 8 C 0.04 0.63 5.16 86.38 0.45 1.08 16 9 C 0.10 2.12 5.92 86.35 0.51 2.63 16 10 N -0.61 -14.36 3.00 -793.23 -2.38 -16.74 16 11 C 0.49 14.48 6.85 87.66 0.60 15.08 16 12 O -0.57 -18.91 11.76 -3.04 -0.04 -18.95 16 13 C 0.08 2.67 2.29 44.17 0.10 2.77 16 14 H 0.10 3.20 7.10 -2.39 -0.02 3.18 16 15 N -0.82 -27.31 8.44 -171.81 -1.45 -28.76 16 16 C -0.08 -3.06 4.41 30.59 0.13 -2.93 16 17 C 0.04 2.09 4.86 29.85 0.15 2.23 16 18 C -0.54 -29.80 9.11 25.60 0.23 -29.56 16 19 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 20 C 0.00 0.20 5.46 84.66 0.46 0.66 16 21 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 22 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 C 0.14 2.89 3.67 45.12 0.17 3.05 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 C -0.12 -2.78 7.62 71.98 0.55 -2.23 16 29 C 0.04 0.68 4.26 86.54 0.37 1.05 16 30 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 32 H 0.07 0.80 8.13 -2.39 -0.02 0.78 16 33 H 0.12 1.54 6.54 -2.39 -0.02 1.53 16 34 H 0.11 1.69 6.72 -2.39 -0.02 1.68 16 35 H 0.09 1.37 8.00 -2.39 -0.02 1.35 16 36 H 0.09 1.33 8.10 -2.39 -0.02 1.31 16 37 H 0.04 0.78 6.83 -2.38 -0.02 0.77 16 38 H 0.11 1.65 8.04 -2.39 -0.02 1.63 16 39 H 0.09 2.18 4.66 -2.38 -0.01 2.16 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.34 11.73 8.58 -89.70 -0.77 10.96 16 42 H 0.35 9.94 9.06 -89.69 -0.81 9.12 16 43 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.07 2.40 6.57 -2.39 -0.02 2.39 16 45 H 0.00 0.18 7.75 -2.39 -0.02 0.16 16 46 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 47 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 48 H 0.05 1.27 6.79 -2.39 -0.02 1.25 16 49 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.05 1.44 6.76 -2.39 -0.02 1.42 16 51 H 0.04 0.70 6.70 -2.39 -0.02 0.69 16 52 H 0.11 1.32 8.11 -2.38 -0.02 1.30 16 Total: -1.00 -70.23 403.86 -0.68 -70.92 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.65 Total: 31.46 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 6.03 Total: 4.29 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -7.86 Total: -113.81 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.23 Total: -38.56 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.23 -0.68 -70.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424164341.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.003 kcal (2) G-P(sol) polarization free energy of solvation -70.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds