Wall clock time and date at job start Wed Apr 1 2020 01:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00007 * 2 1 4 4 O 1.20826 * 120.00009 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00280 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47366 * 180.02562 * 5 3 2 7 7 N 1.46905 * 109.47247 * 180.02562 * 6 5 3 8 8 C 1.46896 * 111.00085 * 66.03926 * 7 6 5 9 9 C 1.53244 * 109.33920 * 187.25362 * 8 7 6 10 10 N 1.47075 * 108.52151 * 306.17309 * 9 8 7 11 11 C 1.34774 * 120.88302 * 231.18455 * 10 9 8 12 12 O 1.21279 * 120.00023 * 175.26994 * 11 10 9 13 13 C 1.50697 * 119.99900 * 355.26604 * 11 10 9 14 14 H 1.09000 * 109.46691 * 40.00202 * 13 11 10 15 15 N 1.46902 * 109.46865 * 160.00122 * 13 11 10 16 16 C 1.52999 * 109.47446 * 280.00289 * 13 11 10 17 17 C 1.52999 * 109.47186 * 174.99919 * 16 13 11 18 18 C 1.50703 * 109.47119 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00167 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99796 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99735 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00234 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46794 * 90.00400 * 22 20 18 24 24 H 1.48504 * 109.46908 * 210.00089 * 22 20 18 25 25 H 1.48493 * 109.47165 * 330.00232 * 22 20 18 26 26 C 1.47081 * 118.23523 * 51.45987 * 10 9 8 27 27 H 1.09001 * 109.62959 * 68.24971 * 26 10 9 28 28 C 1.53001 * 109.63031 * 188.82499 * 26 10 9 29 29 C 1.46900 * 111.00042 * 190.34668 * 7 6 5 30 30 H 1.09002 * 109.47129 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47593 * 299.99946 * 1 2 3 32 32 H 1.09007 * 109.47576 * 60.00100 * 1 2 3 33 33 H 1.09009 * 109.46592 * 60.00417 * 5 3 2 34 34 H 1.08998 * 109.46951 * 300.01153 * 5 3 2 35 35 H 1.08994 * 109.47628 * 60.00114 * 6 5 3 36 36 H 1.09009 * 109.47188 * 300.00058 * 6 5 3 37 37 H 1.09001 * 109.48674 * 67.30095 * 8 7 6 38 38 H 1.08994 * 109.49596 * 307.22344 * 8 7 6 39 39 H 1.08999 * 109.62552 * 186.46409 * 9 8 7 40 40 H 1.08998 * 109.78587 * 65.97723 * 9 8 7 41 41 H 1.00894 * 110.99963 * 60.00632 * 15 13 11 42 42 H 1.00910 * 110.99735 * 183.95627 * 15 13 11 43 43 H 1.09000 * 109.46711 * 294.99976 * 16 13 11 44 44 H 1.08998 * 109.46836 * 54.99646 * 16 13 11 45 45 H 1.08994 * 109.46948 * 299.99830 * 17 16 13 46 46 H 1.08998 * 109.46936 * 60.00179 * 17 16 13 47 47 H 0.97000 * 120.00114 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.46881 * 53.65909 * 28 26 10 49 49 H 1.08999 * 109.47830 * 173.66038 * 28 26 10 50 50 H 1.09002 * 109.47177 * 293.66032 * 28 26 10 51 51 H 1.09001 * 109.49264 * 292.70217 * 29 7 6 52 52 H 1.09004 * 109.48933 * 52.75854 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7420 0.0011 7 7 5.4671 2.8190 0.0011 8 6 6.0219 2.2908 -1.2524 9 6 7.5487 2.2202 -1.1415 10 7 8.0505 3.5458 -0.7491 11 6 9.0391 4.1444 -1.4424 12 8 9.3821 5.2724 -1.1583 13 6 9.7184 3.4119 -2.5707 14 1 8.9758 2.8528 -3.1400 15 7 10.3841 4.3801 -3.4524 16 6 10.7569 2.4447 -1.9989 17 6 11.3579 1.6125 -3.1334 18 6 12.3813 0.6603 -2.5702 19 1 12.5831 0.6501 -1.5093 20 6 13.0605 -0.1971 -3.4095 21 7 13.9540 -1.0277 -2.9181 22 14 12.7119 -0.1789 -5.2446 23 1 13.6168 0.7920 -5.9107 24 1 12.9414 -1.5347 -5.8054 25 1 11.3005 0.2203 -5.4764 26 6 7.4490 4.1982 0.4239 27 1 7.7183 3.6495 1.3264 28 6 7.9523 5.6396 0.5248 29 6 5.9222 4.1937 0.2479 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.9563 0.7806 -0.8893 34 1 3.9556 0.7808 0.8907 35 1 3.6101 3.2360 0.8910 36 1 3.6106 3.2364 -0.8890 37 1 5.7472 2.9484 -2.0772 38 1 5.6237 1.2927 -1.4343 39 1 7.9731 1.9386 -2.1052 40 1 7.8303 1.4843 -0.3883 41 1 11.0777 4.9114 -2.9477 42 1 10.7926 3.9197 -4.2520 43 1 11.5471 3.0104 -1.5052 44 1 10.2784 1.7831 -1.2769 45 1 10.5677 1.0469 -3.6270 46 1 11.8364 2.2742 -3.8553 47 1 14.4316 -1.6311 -3.5085 48 1 7.7731 6.1539 -0.4194 49 1 7.4216 6.1546 1.3255 50 1 9.0208 5.6371 0.7401 51 1 5.6489 4.8247 -0.5979 52 1 5.4513 4.5756 1.1538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424164343.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:40 Heat of formation + Delta-G solvation = -126.922701 kcal Electronic energy + Delta-G solvation = -30801.182163 eV Core-core repulsion = 26607.290212 eV Total energy + Delta-G solvation = -4193.891951 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.74996 -41.45282 -39.35449 -37.64605 -37.28958 -36.06146 -34.88165 -33.68382 -32.45938 -32.05078 -29.68029 -28.60815 -28.25164 -26.70194 -25.51008 -24.64014 -23.16475 -22.47414 -21.61057 -21.32123 -19.98117 -18.96858 -18.75854 -18.16889 -17.72533 -17.63203 -17.19250 -16.59269 -16.30887 -16.22784 -15.97946 -15.80656 -15.71226 -15.41985 -15.16548 -14.80079 -14.58790 -14.52309 -14.28335 -14.01806 -13.71952 -13.62182 -13.49187 -13.42506 -13.20489 -13.01776 -12.84388 -12.69330 -12.56081 -12.40003 -12.21146 -12.08551 -11.92599 -11.88899 -11.82458 -11.71550 -11.64091 -11.57857 -11.38177 -10.75465 -10.13726 -9.75813 -9.58074 -9.31867 -8.27607 -6.32981 1.15297 1.40285 1.41176 1.52676 1.62649 1.68861 1.93469 2.37910 2.83633 3.07959 3.45369 3.66992 3.73553 3.78128 3.90098 3.96829 4.02018 4.07521 4.16778 4.22427 4.24419 4.30222 4.32424 4.34120 4.37074 4.53226 4.59204 4.63905 4.69600 4.71848 4.73325 4.77903 4.83876 4.86943 4.92978 4.96049 5.01117 5.18283 5.34062 5.37853 5.38906 5.48404 5.63916 5.64599 5.88698 5.94454 6.07276 6.27396 6.43507 6.49705 6.69764 6.75451 7.22984 7.31676 8.89119 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010658 B = 0.002533 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.577276 B =11050.818355 C =12972.938278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.465 3.535 4 O -0.544 6.544 5 C -0.106 4.106 6 C 0.073 3.927 7 N -0.536 5.536 8 C 0.038 3.962 9 C 0.103 3.897 10 N -0.611 5.611 11 C 0.523 3.477 12 O -0.557 6.557 13 C 0.078 3.922 14 H 0.115 0.885 15 N -0.831 5.831 16 C -0.115 4.115 17 C -0.004 4.004 18 C -0.532 4.532 19 H 0.026 0.974 20 C 0.002 3.998 21 N -0.953 5.953 22 Si 0.953 3.047 23 H -0.271 1.271 24 H -0.288 1.288 25 H -0.235 1.235 26 C 0.147 3.853 27 H 0.083 0.917 28 C -0.125 4.125 29 C 0.055 3.945 30 H 0.129 0.871 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.344 0.656 42 H 0.353 0.647 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.033 0.967 46 H 0.021 0.979 47 H 0.265 0.735 48 H 0.049 0.951 49 H 0.066 0.934 50 H 0.050 0.950 51 H 0.031 0.969 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.238 4.306 4.850 27.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.310 3.690 4 O -0.434 6.434 5 C -0.144 4.144 6 C -0.054 4.054 7 N -0.260 5.260 8 C -0.090 4.090 9 C -0.020 4.020 10 N -0.345 5.345 11 C 0.312 3.688 12 O -0.435 6.435 13 C -0.037 4.037 14 H 0.133 0.867 15 N -0.362 5.362 16 C -0.155 4.155 17 C -0.042 4.042 18 C -0.570 4.570 19 H 0.044 0.956 20 C -0.195 4.195 21 N -0.593 5.593 22 Si 0.776 3.224 23 H -0.196 1.196 24 H -0.214 1.214 25 H -0.157 1.157 26 C 0.044 3.956 27 H 0.101 0.899 28 C -0.183 4.183 29 C -0.073 4.073 30 H 0.147 0.853 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.135 0.865 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.158 0.842 42 H 0.169 0.831 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.039 0.961 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.084 0.916 50 H 0.069 0.931 51 H 0.050 0.950 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -27.743 5.099 5.245 28.691 hybrid contribution 0.928 -0.274 -0.888 1.313 sum -26.815 4.825 4.357 27.592 Atomic orbital electron populations 1.23519 0.74978 1.05586 1.02422 1.86513 1.24861 1.33053 1.83659 1.24147 0.92895 0.80982 0.70999 1.90675 1.68277 1.37378 1.47060 1.21393 0.85508 0.99106 1.08378 1.21763 0.86487 0.95014 1.02177 1.61863 1.08241 1.21116 1.34826 1.22645 0.93981 1.02258 0.90131 1.22117 0.93881 0.83413 1.02565 1.48254 1.36289 1.20110 1.29832 1.20713 0.79213 0.85939 0.82984 1.90689 1.65161 1.19431 1.68248 1.21515 0.96962 0.92115 0.93142 0.86731 1.58772 1.38513 1.27351 1.11586 1.21982 0.97066 0.97252 0.99239 1.19487 0.95311 0.94454 0.94906 1.21411 1.21619 1.19542 0.94380 0.95591 1.26073 0.94281 0.94497 1.04614 1.70083 1.27245 1.24234 1.37763 0.85623 0.80819 0.77440 0.78533 1.19590 1.21442 1.15738 1.21521 0.91955 0.94296 0.87801 0.89888 1.21979 1.00805 0.94149 1.01372 1.22568 0.94154 0.88666 1.01941 0.85313 0.91980 0.92119 0.85649 0.84940 0.89828 0.94685 0.94497 0.86519 0.88393 0.89663 0.84235 0.83147 0.94276 0.91757 0.94835 0.96067 0.92571 0.93215 0.91571 0.93076 0.95044 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.46 16 2 O -0.36 -5.13 10.57 -51.38 -0.54 -5.67 16 3 C 0.47 7.20 7.96 71.24 0.57 7.77 16 4 O -0.54 -11.81 15.73 21.97 0.35 -11.46 16 5 C -0.11 -1.10 5.75 29.85 0.17 -0.93 16 6 C 0.07 0.99 4.25 86.30 0.37 1.36 16 7 N -0.54 -8.02 4.63 -894.32 -4.14 -12.16 16 8 C 0.04 0.56 5.46 86.39 0.47 1.03 16 9 C 0.10 1.96 5.90 86.35 0.51 2.47 16 10 N -0.61 -14.92 3.00 -793.25 -2.38 -17.30 16 11 C 0.52 15.98 6.85 87.66 0.60 16.58 16 12 O -0.56 -19.90 11.76 -3.03 -0.04 -19.94 16 13 C 0.08 2.32 2.38 44.17 0.11 2.43 16 14 H 0.12 2.98 6.31 -2.39 -0.02 2.97 16 15 N -0.83 -25.14 8.94 -171.80 -1.54 -26.68 16 16 C -0.12 -4.18 4.72 30.59 0.14 -4.03 16 17 C 0.00 -0.17 3.81 29.85 0.11 -0.06 16 18 C -0.53 -29.32 9.66 25.60 0.25 -29.07 16 19 H 0.03 1.61 7.99 -2.91 -0.02 1.59 16 20 C 0.00 0.11 5.47 84.65 0.46 0.58 16 21 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16 22 Si 0.95 41.83 27.47 68.60 1.88 43.71 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 25 H -0.23 -9.07 6.54 99.48 0.65 -8.42 16 26 C 0.15 3.19 3.67 45.11 0.17 3.35 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 C -0.13 -3.06 7.62 71.98 0.55 -2.51 16 29 C 0.06 0.95 4.94 86.54 0.43 1.38 16 30 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.61 8.13 -2.38 -0.02 0.59 16 32 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.13 0.90 6.41 -2.38 -0.02 0.88 16 34 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.19 7.92 -2.39 -0.02 1.17 16 36 H 0.03 0.56 8.08 -2.38 -0.02 0.54 16 37 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.12 1.12 6.18 -2.39 -0.01 1.11 16 39 H 0.10 1.85 5.52 -2.39 -0.01 1.83 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.34 10.98 8.58 -89.70 -0.77 10.21 16 42 H 0.35 10.05 7.55 -89.69 -0.68 9.37 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.06 2.29 7.59 -2.39 -0.02 2.27 16 45 H 0.03 1.32 7.20 -2.39 -0.02 1.31 16 46 H 0.02 0.86 6.29 -2.39 -0.02 0.84 16 47 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 48 H 0.05 1.43 6.79 -2.38 -0.02 1.41 16 49 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.05 1.51 6.77 -2.39 -0.02 1.49 16 51 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.10 1.44 7.99 -2.39 -0.02 1.42 16 Total: -1.00 -73.79 402.69 -0.57 -74.36 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -0.57 Total: 31.64 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 6.10 Total: 1.80 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -7.75 Total: -114.45 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.23 Total: -37.07 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.88 Total: 43.71 kcal Total: -73.79 -0.57 -74.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424164343.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.563 kcal (2) G-P(sol) polarization free energy of solvation -73.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds