Wall clock time and date at job start Wed Apr 1 2020 01:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99884 * 2 1 4 4 O 1.20820 * 120.00100 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99605 * 180.27785 * 3 2 1 6 6 C 1.53001 * 109.47087 * 179.72485 * 5 3 2 7 7 N 1.46898 * 109.47123 * 179.97438 * 6 5 3 8 8 C 1.46906 * 110.99990 * 290.24441 * 7 6 5 9 9 C 1.53236 * 109.34010 * 172.74640 * 8 7 6 10 10 N 1.47085 * 108.52240 * 53.83076 * 9 8 7 11 11 C 1.34774 * 120.88464 * 128.79245 * 10 9 8 12 12 O 1.21282 * 120.00122 * 180.02562 * 11 10 9 13 13 C 1.50703 * 119.99842 * 0.02562 * 11 10 9 14 14 H 1.09001 * 109.46862 * 320.00553 * 13 11 10 15 15 N 1.46899 * 109.47135 * 199.99934 * 13 11 10 16 16 C 1.53002 * 109.46663 * 80.00324 * 13 11 10 17 17 C 1.53000 * 109.47078 * 184.99962 * 16 13 11 18 18 C 1.50697 * 109.47339 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99983 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00147 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99979 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00343 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46655 * 59.99692 * 22 20 18 24 24 H 1.48496 * 109.47363 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47092 * 300.00267 * 22 20 18 26 26 C 1.47086 * 118.23518 * 308.81509 * 10 9 8 27 27 C 1.46899 * 111.00339 * 165.94413 * 7 6 5 28 28 H 1.08994 * 109.49543 * 67.26007 * 27 7 6 29 29 C 1.53008 * 109.48897 * 307.21329 * 27 7 6 30 30 H 1.08999 * 109.47031 * 300.00633 * 1 2 3 31 31 H 1.08996 * 109.46685 * 59.99944 * 1 2 3 32 32 H 1.08995 * 109.47194 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47091 * 299.72157 * 5 3 2 34 34 H 1.08995 * 109.47440 * 59.72025 * 5 3 2 35 35 H 1.08999 * 109.46609 * 299.99442 * 6 5 3 36 36 H 1.08995 * 109.47356 * 59.99489 * 6 5 3 37 37 H 1.09000 * 109.49155 * 292.70624 * 8 7 6 38 38 H 1.08996 * 109.48920 * 52.78718 * 8 7 6 39 39 H 1.08998 * 109.63155 * 294.11819 * 9 8 7 40 40 H 1.09000 * 109.78710 * 173.62963 * 9 8 7 41 41 H 1.00890 * 111.00225 * 300.00268 * 15 13 11 42 42 H 1.00901 * 110.99649 * 63.96052 * 15 13 11 43 43 H 1.08999 * 109.47264 * 304.99906 * 16 13 11 44 44 H 1.08995 * 109.47196 * 65.00140 * 16 13 11 45 45 H 1.08999 * 109.47027 * 300.00089 * 17 16 13 46 46 H 1.09009 * 109.47145 * 59.99905 * 17 16 13 47 47 H 0.96998 * 119.99781 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.62645 * 291.47394 * 26 10 9 49 49 H 1.08997 * 109.78840 * 170.99034 * 26 10 9 50 50 H 1.09001 * 109.47251 * 67.32894 * 29 27 7 51 51 H 1.09001 * 109.46728 * 187.33217 * 29 27 7 52 52 H 1.09002 * 109.47165 * 307.32670 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0063 6 6 4.0002 2.7420 -0.0119 7 7 5.4671 2.8188 -0.0175 8 6 6.0224 2.3760 1.2685 9 6 7.5490 2.2981 1.1622 10 7 8.0507 3.5945 0.6817 11 6 9.0392 4.2385 1.3334 12 8 9.4403 5.3070 0.9232 13 6 9.6460 3.6307 2.5717 14 1 8.8604 3.1777 3.1765 15 7 10.3214 4.6774 3.3504 16 6 10.6614 2.5594 2.1689 17 6 11.1856 1.8565 3.4227 18 6 12.1862 0.8018 3.0261 19 1 12.4241 0.6478 1.9839 20 6 12.7971 0.0325 3.9935 21 7 12.5063 0.2189 5.2625 22 14 14.0369 -1.2754 3.5019 23 1 15.1690 -0.6386 2.7819 24 1 14.5458 -1.9575 4.7188 25 1 13.3820 -2.2693 2.6138 26 6 7.4446 4.1698 -0.5287 27 6 5.9221 4.1740 -0.3559 28 1 5.6485 4.8603 0.4454 29 6 5.2613 4.6233 -1.6607 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.9596 0.7830 0.8834 34 1 3.9524 0.7783 -0.8965 35 1 3.6069 3.2337 -0.9016 36 1 3.6140 3.2385 0.8783 37 1 5.7478 3.0872 2.0475 38 1 5.6244 1.3921 1.5169 39 1 7.8276 1.5139 0.4583 40 1 7.9764 2.0802 2.1410 41 1 11.0545 5.1130 2.8112 42 1 9.6607 5.3636 3.6831 43 1 10.1806 1.8297 1.5175 44 1 11.4921 3.0267 1.6402 45 1 11.6664 2.5862 4.0741 46 1 10.3548 1.3892 3.9515 47 1 12.9364 -0.3220 5.9432 48 1 7.7131 3.5656 -1.3953 49 1 7.7999 5.1906 -0.6699 50 1 4.1905 4.7494 -1.5011 51 1 5.6952 5.5709 -1.9800 52 1 5.4278 3.8698 -2.4305 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424167078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:57 Heat of formation + Delta-G solvation = -117.755862 kcal Electronic energy + Delta-G solvation = -30653.160821 eV Core-core repulsion = 26459.666374 eV Total energy + Delta-G solvation = -4193.494447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94560 -40.42325 -38.72167 -36.96110 -35.31817 -35.16397 -33.30010 -32.76666 -31.54900 -30.10999 -28.60882 -27.80608 -27.38743 -25.80421 -23.97055 -23.11105 -22.90910 -21.00385 -20.64502 -20.01844 -18.92282 -18.10077 -17.31431 -17.12612 -16.96184 -16.42167 -16.07097 -15.79051 -15.57484 -15.09839 -14.99010 -14.70282 -14.63759 -14.38519 -14.09186 -13.76989 -13.53352 -13.40700 -13.04566 -12.65244 -12.62799 -12.42137 -12.30924 -12.24883 -12.15245 -12.01841 -11.72604 -11.49207 -11.38777 -11.23888 -11.20086 -10.98339 -10.89063 -10.87273 -10.65798 -10.54969 -10.05825 -9.78854 -9.36862 -9.01706 -8.93930 -8.51152 -8.34851 -8.20270 -5.93886 -3.96058 1.79408 2.23543 2.74395 2.98121 3.36150 3.40847 3.43277 3.51118 4.27509 4.41155 4.47819 4.51893 4.59676 4.63496 4.68583 4.74150 4.76905 4.93614 4.96296 5.00132 5.04259 5.08796 5.11876 5.16692 5.31532 5.36818 5.41479 5.44470 5.46104 5.48375 5.64096 5.67290 5.74136 5.78878 5.83686 5.94490 5.98042 6.38775 6.44745 6.59645 6.66884 6.68941 7.07116 7.32070 7.34230 7.51441 7.74951 7.78677 7.95335 8.12710 8.26158 8.48207 9.11639 9.67122 11.16916 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010788 B = 0.002417 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.838009 B =11581.921409 C =13440.197343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.464 3.536 4 O -0.511 6.511 5 C -0.112 4.112 6 C 0.061 3.939 7 N -0.532 5.532 8 C 0.035 3.965 9 C 0.108 3.892 10 N -0.613 5.613 11 C 0.486 3.514 12 O -0.555 6.555 13 C 0.078 3.922 14 H 0.097 0.903 15 N -0.807 5.807 16 C -0.096 4.096 17 C 0.033 3.967 18 C -0.522 4.522 19 H 0.051 0.949 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 C 0.120 3.880 27 C 0.072 3.928 28 H 0.046 0.954 29 C -0.149 4.149 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.348 0.652 42 H 0.333 0.667 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.035 0.965 46 H 0.012 0.988 47 H 0.260 0.740 48 H 0.073 0.927 49 H 0.093 0.907 50 H 0.061 0.939 51 H 0.065 0.935 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.682 3.105 -12.129 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.306 3.694 4 O -0.398 6.398 5 C -0.150 4.150 6 C -0.067 4.067 7 N -0.258 5.258 8 C -0.093 4.093 9 C -0.015 4.015 10 N -0.347 5.347 11 C 0.273 3.727 12 O -0.433 6.433 13 C -0.038 4.038 14 H 0.115 0.885 15 N -0.335 5.335 16 C -0.134 4.134 17 C -0.004 4.004 18 C -0.560 4.560 19 H 0.070 0.930 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.004 4.004 27 C -0.037 4.037 28 H 0.064 0.936 29 C -0.207 4.207 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.162 0.838 42 H 0.145 0.855 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.111 0.889 50 H 0.080 0.920 51 H 0.084 0.916 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.235 3.010 -11.999 26.323 hybrid contribution -0.327 0.345 -0.352 0.592 sum -23.562 3.355 -12.351 26.814 Atomic orbital electron populations 1.23279 0.76173 1.03823 1.02570 1.86522 1.23582 1.33452 1.84022 1.23799 0.92220 0.81300 0.72032 1.90679 1.67429 1.36358 1.45382 1.21370 0.86786 0.99937 1.06891 1.21951 0.87600 0.94114 1.03058 1.61909 1.07703 1.24743 1.31433 1.22625 0.95490 1.01370 0.89821 1.21971 0.92371 0.85199 1.01973 1.48293 1.36968 1.21763 1.27702 1.22768 0.78427 0.84867 0.86598 1.90631 1.61559 1.22658 1.68486 1.21871 0.97796 0.94821 0.89276 0.88494 1.59019 1.15379 1.17500 1.41564 1.21681 0.95776 0.94357 1.01624 1.19003 0.95664 0.94630 0.91152 1.21231 1.23849 1.18141 0.92818 0.93038 1.24987 0.96902 0.97415 0.94998 1.69966 1.43218 1.40396 0.99625 0.86716 0.81865 0.81973 0.77752 1.20339 1.21361 1.20341 1.21679 0.90364 1.00589 0.87749 1.21970 0.95351 0.88560 0.97805 0.93590 1.21911 1.00405 1.01797 0.96583 0.91862 0.91867 0.87976 0.87363 0.86473 0.88984 0.93710 0.94036 0.88986 0.89988 0.88028 0.83813 0.85549 0.92688 0.92843 0.94710 0.96939 0.93052 0.90848 0.88915 0.92035 0.91597 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.89 10.57 -39.26 -0.41 -3.31 16 3 C 0.46 4.01 7.96 36.01 0.29 4.30 16 4 O -0.51 -5.78 15.73 -18.75 -0.29 -6.07 16 5 C -0.11 -0.74 5.83 -27.88 -0.16 -0.91 16 6 C 0.06 0.48 4.01 -3.82 -0.02 0.46 16 7 N -0.53 -4.61 4.45 -226.35 -1.01 -5.62 16 8 C 0.04 0.32 5.47 -3.70 -0.02 0.30 16 9 C 0.11 1.19 5.73 -3.60 -0.02 1.17 16 10 N -0.61 -8.01 3.01 -172.46 -0.52 -8.52 16 11 C 0.49 7.76 6.95 -10.99 -0.08 7.69 16 12 O -0.56 -10.31 15.71 5.56 0.09 -10.23 16 13 C 0.08 1.30 2.30 -68.86 -0.16 1.14 16 14 H 0.10 1.52 6.52 -51.93 -0.34 1.18 16 15 N -0.81 -13.65 8.44 -5.65 -0.05 -13.70 16 16 C -0.10 -1.91 4.58 -26.73 -0.12 -2.03 16 17 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 18 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 19 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 22 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.12 1.36 5.87 -3.60 -0.02 1.34 16 27 C 0.07 0.68 2.60 -67.59 -0.18 0.50 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 C -0.15 -1.12 8.51 37.16 0.32 -0.80 16 30 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 31 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.11 0.61 6.55 -51.93 -0.34 0.27 16 34 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.74 5.56 -51.93 -0.29 0.45 16 36 H 0.04 0.40 8.04 -51.93 -0.42 -0.02 16 37 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.65 6.35 -51.93 -0.33 0.32 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 1.19 5.32 -51.93 -0.28 0.91 16 41 H 0.35 6.00 8.58 -39.30 -0.34 5.66 16 42 H 0.33 4.92 9.06 -39.29 -0.36 4.56 16 43 H 0.05 1.03 7.25 -51.93 -0.38 0.65 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 46 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.09 1.17 7.07 -51.93 -0.37 0.81 16 50 H 0.06 0.44 6.48 -51.93 -0.34 0.10 16 51 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 410.10 15.07 6.18 6.18 Total: -1.00 -33.98 410.10 -8.73 -42.71 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.78 Total: 6.11 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 0.35 Total: 1.81 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.84 Total: -53.73 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.62 Total: -19.60 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.98 -8.73 -42.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.049 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds