Wall clock time and date at job start Wed Apr 1 2020 01:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99884 * 2 1 4 4 O 1.20820 * 120.00100 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99605 * 180.27785 * 3 2 1 6 6 C 1.53001 * 109.47087 * 179.72485 * 5 3 2 7 7 N 1.46898 * 109.47123 * 179.97438 * 6 5 3 8 8 C 1.46906 * 110.99990 * 290.24441 * 7 6 5 9 9 C 1.53236 * 109.34010 * 172.74640 * 8 7 6 10 10 N 1.47085 * 108.52240 * 53.83076 * 9 8 7 11 11 C 1.34774 * 120.88464 * 128.79245 * 10 9 8 12 12 O 1.21282 * 120.00122 * 180.02562 * 11 10 9 13 13 C 1.50703 * 119.99842 * 0.02562 * 11 10 9 14 14 H 1.09001 * 109.46862 * 320.00553 * 13 11 10 15 15 N 1.46899 * 109.47135 * 199.99934 * 13 11 10 16 16 C 1.53002 * 109.46663 * 80.00324 * 13 11 10 17 17 C 1.53000 * 109.47078 * 184.99962 * 16 13 11 18 18 C 1.50697 * 109.47339 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99983 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00147 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99979 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00343 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46655 * 59.99692 * 22 20 18 24 24 H 1.48496 * 109.47363 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47092 * 300.00267 * 22 20 18 26 26 C 1.47086 * 118.23518 * 308.81509 * 10 9 8 27 27 C 1.46899 * 111.00339 * 165.94413 * 7 6 5 28 28 H 1.08994 * 109.49543 * 67.26007 * 27 7 6 29 29 C 1.53008 * 109.48897 * 307.21329 * 27 7 6 30 30 H 1.08999 * 109.47031 * 300.00633 * 1 2 3 31 31 H 1.08996 * 109.46685 * 59.99944 * 1 2 3 32 32 H 1.08995 * 109.47194 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47091 * 299.72157 * 5 3 2 34 34 H 1.08995 * 109.47440 * 59.72025 * 5 3 2 35 35 H 1.08999 * 109.46609 * 299.99442 * 6 5 3 36 36 H 1.08995 * 109.47356 * 59.99489 * 6 5 3 37 37 H 1.09000 * 109.49155 * 292.70624 * 8 7 6 38 38 H 1.08996 * 109.48920 * 52.78718 * 8 7 6 39 39 H 1.08998 * 109.63155 * 294.11819 * 9 8 7 40 40 H 1.09000 * 109.78710 * 173.62963 * 9 8 7 41 41 H 1.00890 * 111.00225 * 300.00268 * 15 13 11 42 42 H 1.00901 * 110.99649 * 63.96052 * 15 13 11 43 43 H 1.08999 * 109.47264 * 304.99906 * 16 13 11 44 44 H 1.08995 * 109.47196 * 65.00140 * 16 13 11 45 45 H 1.08999 * 109.47027 * 300.00089 * 17 16 13 46 46 H 1.09009 * 109.47145 * 59.99905 * 17 16 13 47 47 H 0.96998 * 119.99781 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.62645 * 291.47394 * 26 10 9 49 49 H 1.08997 * 109.78840 * 170.99034 * 26 10 9 50 50 H 1.09001 * 109.47251 * 67.32894 * 29 27 7 51 51 H 1.09001 * 109.46728 * 187.33217 * 29 27 7 52 52 H 1.09002 * 109.47165 * 307.32670 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0063 6 6 4.0002 2.7420 -0.0119 7 7 5.4671 2.8188 -0.0175 8 6 6.0224 2.3760 1.2685 9 6 7.5490 2.2981 1.1622 10 7 8.0507 3.5945 0.6817 11 6 9.0392 4.2385 1.3334 12 8 9.4403 5.3070 0.9232 13 6 9.6460 3.6307 2.5717 14 1 8.8604 3.1777 3.1765 15 7 10.3214 4.6774 3.3504 16 6 10.6614 2.5594 2.1689 17 6 11.1856 1.8565 3.4227 18 6 12.1862 0.8018 3.0261 19 1 12.4241 0.6478 1.9839 20 6 12.7971 0.0325 3.9935 21 7 12.5063 0.2189 5.2625 22 14 14.0369 -1.2754 3.5019 23 1 15.1690 -0.6386 2.7819 24 1 14.5458 -1.9575 4.7188 25 1 13.3820 -2.2693 2.6138 26 6 7.4446 4.1698 -0.5287 27 6 5.9221 4.1740 -0.3559 28 1 5.6485 4.8603 0.4454 29 6 5.2613 4.6233 -1.6607 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.9596 0.7830 0.8834 34 1 3.9524 0.7783 -0.8965 35 1 3.6069 3.2337 -0.9016 36 1 3.6140 3.2385 0.8783 37 1 5.7478 3.0872 2.0475 38 1 5.6244 1.3921 1.5169 39 1 7.8276 1.5139 0.4583 40 1 7.9764 2.0802 2.1410 41 1 11.0545 5.1130 2.8112 42 1 9.6607 5.3636 3.6831 43 1 10.1806 1.8297 1.5175 44 1 11.4921 3.0267 1.6402 45 1 11.6664 2.5862 4.0741 46 1 10.3548 1.3892 3.9515 47 1 12.9364 -0.3220 5.9432 48 1 7.7131 3.5656 -1.3953 49 1 7.7999 5.1906 -0.6699 50 1 4.1905 4.7494 -1.5011 51 1 5.6952 5.5709 -1.9800 52 1 5.4278 3.8698 -2.4305 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424167078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:56 Heat of formation + Delta-G solvation = -142.174093 kcal Electronic energy + Delta-G solvation = -30654.219675 eV Core-core repulsion = 26459.666374 eV Total energy + Delta-G solvation = -4194.553301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.70588 -41.40579 -39.68630 -37.62958 -36.87709 -36.13729 -34.83263 -33.99530 -32.28471 -31.91412 -29.32549 -28.85388 -28.12870 -27.28498 -25.26131 -24.06709 -23.89546 -22.26262 -21.55280 -21.08403 -20.06534 -18.83783 -18.52001 -18.23231 -17.77833 -17.60459 -17.23861 -16.94308 -16.59186 -16.43014 -16.11600 -15.81579 -15.50605 -15.45339 -15.09972 -15.00070 -14.33438 -14.26785 -14.13770 -14.05659 -13.72352 -13.52578 -13.34337 -13.20385 -13.10144 -12.91645 -12.77268 -12.75377 -12.50493 -12.44948 -12.22975 -12.18271 -12.02074 -11.82668 -11.71706 -11.65107 -11.57480 -11.54523 -11.20151 -10.96985 -10.45565 -9.87585 -9.63208 -9.37172 -8.10876 -6.20766 1.15321 1.43704 1.46482 1.46975 1.54504 1.68103 1.92817 2.47080 2.79762 3.22240 3.41303 3.61881 3.68895 3.75381 3.81712 3.92909 4.01978 4.05394 4.16904 4.22642 4.28933 4.29420 4.32620 4.32927 4.40509 4.48856 4.58531 4.68566 4.71761 4.76757 4.78444 4.81310 4.86149 4.89887 4.94602 4.99663 5.09189 5.25909 5.26547 5.38848 5.42205 5.59997 5.86736 5.88607 5.94646 6.01054 6.08101 6.30956 6.33549 6.48810 6.69801 6.97337 7.02773 7.47162 8.99995 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010788 B = 0.002417 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.838009 B =11581.921409 C =13440.197343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.465 3.535 4 O -0.543 6.543 5 C -0.105 4.105 6 C 0.066 3.934 7 N -0.528 5.528 8 C 0.039 3.961 9 C 0.103 3.897 10 N -0.607 5.607 11 C 0.487 3.513 12 O -0.585 6.585 13 C 0.086 3.914 14 H 0.109 0.891 15 N -0.818 5.818 16 C -0.080 4.080 17 C 0.042 3.958 18 C -0.541 4.541 19 H 0.055 0.945 20 C 0.003 3.997 21 N -0.929 5.929 22 Si 0.957 3.043 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.264 1.264 26 C 0.119 3.881 27 C 0.077 3.923 28 H 0.032 0.968 29 C -0.143 4.143 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.033 0.967 37 H 0.035 0.965 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.345 0.655 42 H 0.345 0.655 43 H 0.069 0.931 44 H 0.039 0.961 45 H 0.004 0.996 46 H -0.003 1.003 47 H 0.262 0.738 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.066 0.934 51 H 0.069 0.931 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.601 1.528 -13.536 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.310 3.690 4 O -0.433 6.433 5 C -0.143 4.143 6 C -0.062 4.062 7 N -0.253 5.253 8 C -0.089 4.089 9 C -0.019 4.019 10 N -0.340 5.340 11 C 0.275 3.725 12 O -0.465 6.465 13 C -0.029 4.029 14 H 0.127 0.873 15 N -0.347 5.347 16 C -0.119 4.119 17 C 0.005 3.995 18 C -0.580 4.580 19 H 0.073 0.927 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.782 3.218 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.189 1.189 26 C -0.004 4.004 27 C -0.032 4.032 28 H 0.050 0.950 29 C -0.201 4.201 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.135 0.865 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.087 0.913 44 H 0.058 0.942 45 H 0.022 0.978 46 H 0.015 0.985 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.085 0.915 51 H 0.088 0.912 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.195 1.403 -13.427 27.707 hybrid contribution -0.109 0.819 0.093 0.831 sum -24.304 2.221 -13.335 27.811 Atomic orbital electron populations 1.23516 0.74982 1.05584 1.02418 1.86516 1.24861 1.33067 1.83662 1.24149 0.92889 0.80987 0.71000 1.90670 1.68263 1.37358 1.47054 1.21370 0.85471 0.99134 1.08307 1.21894 0.86723 0.95066 1.02516 1.61923 1.08222 1.24039 1.31135 1.22624 0.93927 1.02606 0.89786 1.22137 0.93844 0.84207 1.01739 1.48351 1.35865 1.22096 1.27641 1.22427 0.79088 0.84638 0.86371 1.90618 1.62853 1.23951 1.69125 1.21657 0.97160 0.94034 0.90078 0.87316 1.59004 1.15917 1.18010 1.41771 1.21395 0.96180 0.95126 0.99179 1.18801 0.94507 0.93599 0.92609 1.21678 1.24417 1.18764 0.93095 0.92658 1.25874 0.98934 0.99778 0.94928 1.70097 1.44513 1.41596 1.00743 0.85624 0.79292 0.79240 0.77607 1.19821 1.21062 1.18910 1.21784 0.91593 0.99845 0.87153 1.21886 0.93972 0.88846 0.98461 0.94979 1.21866 1.00486 1.02156 0.95549 0.92181 0.91919 0.85317 0.85891 0.84894 0.89021 0.94887 0.94707 0.86526 0.89150 0.88706 0.84169 0.84205 0.91267 0.94189 0.97800 0.98469 0.92972 0.89947 0.90323 0.91525 0.91180 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.24 10.57 -51.42 -0.54 -5.78 16 3 C 0.47 7.34 7.96 71.24 0.57 7.91 16 4 O -0.54 -11.87 15.73 21.98 0.35 -11.52 16 5 C -0.11 -1.14 5.83 29.85 0.17 -0.96 16 6 C 0.07 0.91 4.01 86.30 0.35 1.26 16 7 N -0.53 -8.03 4.45 -870.04 -3.87 -11.89 16 8 C 0.04 0.61 5.47 86.38 0.47 1.08 16 9 C 0.10 2.09 5.73 86.35 0.49 2.59 16 10 N -0.61 -15.23 3.01 -817.93 -2.46 -17.69 16 11 C 0.49 15.41 6.95 87.66 0.61 16.02 16 12 O -0.58 -21.78 15.71 -3.03 -0.05 -21.83 16 13 C 0.09 2.87 2.30 44.17 0.10 2.97 16 14 H 0.11 3.36 6.52 -2.39 -0.02 3.34 16 15 N -0.82 -28.07 8.44 -171.79 -1.45 -29.52 16 16 C -0.08 -3.20 4.58 30.60 0.14 -3.06 16 17 C 0.04 2.14 4.86 29.85 0.15 2.29 16 18 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 19 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 20 C 0.00 0.15 5.46 84.65 0.46 0.62 16 21 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 22 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 26 C 0.12 2.58 5.87 86.35 0.51 3.09 16 27 C 0.08 1.35 2.60 45.00 0.12 1.46 16 28 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 29 C -0.14 -1.89 8.51 71.98 0.61 -1.28 16 30 H 0.06 0.62 8.13 -2.39 -0.02 0.61 16 31 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 32 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.12 0.99 6.55 -2.38 -0.02 0.98 16 34 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.31 5.56 -2.39 -0.01 1.30 16 36 H 0.03 0.55 8.04 -2.39 -0.02 0.53 16 37 H 0.03 0.61 8.14 -2.39 -0.02 0.60 16 38 H 0.12 1.29 6.35 -2.39 -0.02 1.28 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.09 2.08 5.32 -2.39 -0.01 2.07 16 41 H 0.34 12.16 8.58 -89.70 -0.77 11.39 16 42 H 0.34 10.25 9.06 -89.69 -0.81 9.44 16 43 H 0.07 2.53 7.25 -2.39 -0.02 2.51 16 44 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.00 0.20 7.75 -2.39 -0.02 0.18 16 46 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 47 H 0.26 14.90 8.31 -92.71 -0.77 14.12 16 48 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.08 1.96 7.07 -2.39 -0.02 1.94 16 50 H 0.07 0.84 6.48 -2.39 -0.02 0.82 16 51 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.32 410.10 -0.18 -73.50 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: -0.65 Total: 29.07 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 6.18 Total: 5.46 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -7.49 Total: -114.79 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -0.25 Total: -39.13 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -73.32 -0.18 -73.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.673 kcal (2) G-P(sol) polarization free energy of solvation -73.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds