Wall clock time and date at job start Wed Apr 1 2020 01:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45211 * 1 3 3 C 1.34232 * 116.99661 * 2 1 4 4 O 1.20817 * 120.00292 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99477 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46902 * 180.02562 * 5 3 2 7 7 N 1.46907 * 109.46939 * 179.97438 * 6 5 3 8 8 C 1.46898 * 111.00217 * 289.78366 * 7 6 5 9 9 C 1.53232 * 109.33820 * 172.74673 * 8 7 6 10 10 N 1.47079 * 108.52243 * 53.83068 * 9 8 7 11 11 C 1.34774 * 120.88495 * 128.81396 * 10 9 8 12 12 O 1.21286 * 120.00245 * 180.26959 * 11 10 9 13 13 C 1.50704 * 119.99949 * 0.02562 * 11 10 9 14 14 H 1.08999 * 109.47279 * 39.99408 * 13 11 10 15 15 N 1.46902 * 109.47386 * 159.99841 * 13 11 10 16 16 C 1.53003 * 109.46761 * 279.99837 * 13 11 10 17 17 C 1.52999 * 109.47074 * 175.00229 * 16 13 11 18 18 C 1.50699 * 109.47246 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99763 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00487 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99321 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00491 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46586 * 60.00546 * 22 20 18 24 24 H 1.48495 * 109.47023 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47377 * 300.00586 * 22 20 18 26 26 C 1.47081 * 118.23568 * 309.08542 * 10 9 8 27 27 C 1.46902 * 110.99597 * 165.47605 * 7 6 5 28 28 H 1.09001 * 109.48571 * 67.27232 * 27 7 6 29 29 C 1.52993 * 109.49469 * 307.21724 * 27 7 6 30 30 H 1.09000 * 109.46957 * 59.99966 * 1 2 3 31 31 H 1.08999 * 109.46584 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46559 * 299.99840 * 1 2 3 33 33 H 1.09002 * 109.47475 * 59.99740 * 5 3 2 34 34 H 1.09002 * 109.47415 * 300.00013 * 5 3 2 35 35 H 1.08996 * 109.46709 * 60.00067 * 6 5 3 36 36 H 1.08991 * 109.46877 * 299.99596 * 6 5 3 37 37 H 1.09000 * 109.49303 * 52.78366 * 8 7 6 38 38 H 1.09002 * 109.48651 * 292.70512 * 8 7 6 39 39 H 1.09001 * 109.63097 * 294.11796 * 9 8 7 40 40 H 1.09003 * 109.78768 * 173.62832 * 9 8 7 41 41 H 1.00898 * 110.99824 * 296.04530 * 15 13 11 42 42 H 1.00896 * 110.99761 * 59.99677 * 15 13 11 43 43 H 1.09004 * 109.47339 * 294.99866 * 16 13 11 44 44 H 1.08998 * 109.47548 * 54.99904 * 16 13 11 45 45 H 1.08997 * 109.46836 * 299.99589 * 17 16 13 46 46 H 1.08998 * 109.47199 * 59.99461 * 17 16 13 47 47 H 0.97001 * 119.99930 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.62761 * 170.62140 * 26 10 9 49 49 H 1.08997 * 109.62612 * 291.20067 * 26 10 9 50 50 H 1.09002 * 109.47238 * 67.24832 * 29 27 7 51 51 H 1.09000 * 109.47136 * 187.25172 * 29 27 7 52 52 H 1.08997 * 109.47347 * 307.24714 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4672 2.8190 0.0023 8 6 6.0162 2.3828 1.2931 9 6 7.5434 2.3045 1.1946 10 7 8.0473 3.5984 0.7097 11 6 9.0328 4.2456 1.3626 12 8 9.4329 5.3142 0.9513 13 6 9.6341 3.6441 2.6067 14 1 9.7454 2.5681 2.4729 15 7 10.9513 4.2457 2.8542 16 6 8.7163 3.9173 3.8000 17 6 9.2621 3.2019 5.0374 18 6 8.3585 3.4715 6.2130 19 1 7.4828 4.0915 6.0898 20 6 8.6496 2.9267 7.4456 21 7 9.7163 2.1722 7.5955 22 14 7.5299 3.2615 8.9029 23 1 6.1644 2.7609 8.6030 24 1 8.0589 2.5660 10.1035 25 1 7.4760 4.7229 9.1603 26 6 7.4429 4.1703 -0.5031 27 6 5.9237 4.1724 -0.3411 28 1 5.6462 4.8628 0.4554 29 6 5.2692 4.6148 -1.6513 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 3.9565 0.7805 -0.8891 34 1 3.9557 0.7809 0.8908 35 1 3.6101 3.2359 0.8911 36 1 3.6108 3.2364 -0.8889 37 1 5.6170 1.4003 1.5448 38 1 5.7378 3.0982 2.0670 39 1 7.8253 1.5167 0.4960 40 1 7.9661 2.0917 2.1765 41 1 11.5954 4.0246 2.1097 42 1 10.8748 5.2436 2.9817 43 1 8.6756 4.9901 3.9890 44 1 7.7144 3.5490 3.5797 45 1 9.3027 2.1292 4.8485 46 1 10.2640 3.5702 5.2578 47 1 9.9214 1.7891 8.4628 48 1 7.7964 5.1920 -0.6415 49 1 7.7150 3.5653 -1.3679 50 1 4.1974 4.7402 -1.4979 51 1 5.7035 5.5615 -1.9728 52 1 5.4406 3.8580 -2.4168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424167081.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:00 Heat of formation + Delta-G solvation = -118.369902 kcal Electronic energy + Delta-G solvation = -30969.498414 eV Core-core repulsion = 26775.977340 eV Total energy + Delta-G solvation = -4193.521074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88527 -40.41118 -38.67766 -36.89813 -35.34203 -35.13450 -33.26236 -32.77999 -31.49080 -30.12853 -28.55666 -27.78498 -27.34301 -25.83057 -23.91416 -23.05590 -22.89668 -20.92935 -20.49071 -20.23993 -18.80916 -18.03168 -17.29600 -17.05852 -16.91351 -16.42746 -16.04133 -15.80162 -15.48190 -15.14359 -14.98271 -14.71247 -14.47051 -14.41995 -14.12119 -13.64280 -13.50358 -13.33183 -13.11359 -12.58842 -12.56622 -12.39965 -12.32085 -12.17688 -12.11365 -12.00578 -11.67150 -11.50773 -11.34378 -11.17876 -11.15792 -10.92736 -10.88599 -10.82220 -10.67171 -10.57388 -10.06023 -9.81827 -9.38491 -9.03632 -8.89648 -8.48170 -8.35883 -8.20795 -5.95697 -3.98044 1.86381 2.29748 2.73147 2.99478 3.34253 3.39223 3.41542 3.58852 4.34288 4.47107 4.48027 4.55145 4.65380 4.70918 4.74032 4.77269 4.82214 4.97159 5.02977 5.05772 5.10656 5.13891 5.18135 5.23144 5.36090 5.39882 5.41129 5.49262 5.51336 5.56826 5.63884 5.70809 5.75062 5.80014 5.82957 5.97370 6.03662 6.36576 6.44964 6.62313 6.67782 6.75305 7.04902 7.34233 7.38872 7.51696 7.73078 7.78959 7.93550 8.11001 8.26125 8.46104 9.09616 9.65213 11.15088 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008004 B = 0.003085 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.364183 B = 9075.021056 C =11889.908364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.463 3.537 4 O -0.510 6.510 5 C -0.111 4.111 6 C 0.059 3.941 7 N -0.533 5.533 8 C 0.034 3.966 9 C 0.108 3.892 10 N -0.614 5.614 11 C 0.486 3.514 12 O -0.555 6.555 13 C 0.078 3.922 14 H 0.098 0.902 15 N -0.807 5.807 16 C -0.096 4.096 17 C 0.033 3.967 18 C -0.523 4.523 19 H 0.050 0.950 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.888 3.112 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.278 1.278 26 C 0.121 3.879 27 C 0.070 3.930 28 H 0.048 0.952 29 C -0.148 4.148 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.334 0.666 42 H 0.347 0.653 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.013 0.987 46 H 0.035 0.965 47 H 0.260 0.740 48 H 0.092 0.908 49 H 0.071 0.929 50 H 0.061 0.939 51 H 0.065 0.935 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.964 -4.340 -20.898 24.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.306 3.694 4 O -0.397 6.397 5 C -0.149 4.149 6 C -0.068 4.068 7 N -0.258 5.258 8 C -0.094 4.094 9 C -0.016 4.016 10 N -0.348 5.348 11 C 0.273 3.727 12 O -0.433 6.433 13 C -0.038 4.038 14 H 0.116 0.884 15 N -0.335 5.335 16 C -0.134 4.134 17 C -0.004 4.004 18 C -0.562 4.562 19 H 0.069 0.931 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.716 3.284 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.003 4.003 27 C -0.039 4.039 28 H 0.066 0.934 29 C -0.206 4.206 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.146 0.854 42 H 0.161 0.839 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.031 0.969 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.111 0.889 49 H 0.090 0.910 50 H 0.080 0.920 51 H 0.084 0.916 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.647 -4.343 -20.654 24.605 hybrid contribution -1.489 1.154 0.599 1.977 sum -14.136 -3.188 -20.055 24.742 Atomic orbital electron populations 1.23276 0.76205 1.03770 1.02594 1.86517 1.23562 1.33484 1.84077 1.23796 0.92226 0.81300 0.72068 1.90683 1.67411 1.36349 1.45279 1.21359 0.86789 0.99969 1.06773 1.21958 0.87595 0.94112 1.03169 1.61936 1.07902 1.24877 1.31118 1.22603 0.95192 1.01748 0.89884 1.21961 0.93049 0.84928 1.01616 1.48299 1.37105 1.21969 1.27395 1.22777 0.78902 0.85052 0.85921 1.90631 1.62018 1.22181 1.68473 1.21861 0.91053 0.99567 0.91307 0.88398 1.59014 1.07604 1.18173 1.48663 1.21693 0.95922 1.01491 0.94304 1.19001 0.97290 0.94804 0.89329 1.21222 1.09805 1.30681 0.94459 0.93136 1.24976 0.95244 0.95294 0.98689 1.69961 1.25803 1.33306 1.24023 0.86728 0.80959 0.78428 0.82269 1.20397 1.21296 1.20334 1.21582 0.90696 1.00527 0.87471 1.21891 0.95287 0.88852 0.97891 0.93368 1.21900 1.00559 1.01705 0.96441 0.91907 0.88022 0.91808 0.86625 0.87317 0.93495 0.89032 0.88985 0.93368 0.90553 0.87810 0.85443 0.83859 0.92909 0.92897 0.96877 0.94654 0.93016 0.88949 0.91031 0.91977 0.91642 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.14 10.57 -39.26 -0.41 -3.56 16 3 C 0.46 4.41 7.96 36.00 0.29 4.69 16 4 O -0.51 -6.28 15.73 -18.74 -0.29 -6.57 16 5 C -0.11 -0.82 5.83 -27.88 -0.16 -0.98 16 6 C 0.06 0.53 4.02 -3.82 -0.02 0.51 16 7 N -0.53 -5.01 4.44 -226.63 -1.01 -6.01 16 8 C 0.03 0.35 5.47 -3.71 -0.02 0.33 16 9 C 0.11 1.19 5.96 -3.61 -0.02 1.17 16 10 N -0.61 -8.04 3.02 -172.74 -0.52 -8.56 16 11 C 0.49 7.77 6.95 -10.98 -0.08 7.70 16 12 O -0.56 -10.32 15.71 5.55 0.09 -10.23 16 13 C 0.08 1.30 2.29 -68.86 -0.16 1.14 16 14 H 0.10 1.53 6.86 -51.93 -0.36 1.18 16 15 N -0.81 -13.62 8.44 -5.65 -0.05 -13.67 16 16 C -0.10 -1.90 4.45 -26.73 -0.12 -2.02 16 17 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 18 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 19 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 22 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.12 1.38 5.85 -3.84 -0.02 1.36 16 27 C 0.07 0.71 2.59 -67.83 -0.18 0.53 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 C -0.15 -1.18 8.51 37.15 0.32 -0.87 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 33 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 0.71 6.56 -51.93 -0.34 0.37 16 35 H 0.05 0.49 8.03 -51.93 -0.42 0.08 16 36 H 0.09 0.81 5.53 -51.93 -0.29 0.52 16 37 H 0.09 0.77 6.38 -51.93 -0.33 0.44 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 1.27 4.85 -51.93 -0.25 1.01 16 41 H 0.33 4.90 9.06 -39.29 -0.36 4.55 16 42 H 0.35 5.99 8.58 -39.29 -0.34 5.65 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.99 6.93 -51.93 -0.36 0.63 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.04 0.97 7.75 -51.93 -0.40 0.56 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.09 1.19 7.06 -51.93 -0.37 0.82 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.06 0.49 6.46 -51.93 -0.34 0.15 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 52 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 409.71 15.07 6.17 6.17 Total: -1.00 -33.89 409.71 -8.71 -42.60 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -8.76 Total: 6.84 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 0.35 Total: 2.26 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.84 Total: -54.05 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.62 Total: -20.36 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.89 -8.71 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167081.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.768 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds