Wall clock time and date at job start Wed Apr 1 2020 01:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45211 * 1 3 3 C 1.34232 * 116.99661 * 2 1 4 4 O 1.20817 * 120.00292 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99477 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46902 * 180.02562 * 5 3 2 7 7 N 1.46907 * 109.46939 * 179.97438 * 6 5 3 8 8 C 1.46898 * 111.00217 * 289.78366 * 7 6 5 9 9 C 1.53232 * 109.33820 * 172.74673 * 8 7 6 10 10 N 1.47079 * 108.52243 * 53.83068 * 9 8 7 11 11 C 1.34774 * 120.88495 * 128.81396 * 10 9 8 12 12 O 1.21286 * 120.00245 * 180.26959 * 11 10 9 13 13 C 1.50704 * 119.99949 * 0.02562 * 11 10 9 14 14 H 1.08999 * 109.47279 * 39.99408 * 13 11 10 15 15 N 1.46902 * 109.47386 * 159.99841 * 13 11 10 16 16 C 1.53003 * 109.46761 * 279.99837 * 13 11 10 17 17 C 1.52999 * 109.47074 * 175.00229 * 16 13 11 18 18 C 1.50699 * 109.47246 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99763 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00487 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99321 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00491 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46586 * 60.00546 * 22 20 18 24 24 H 1.48495 * 109.47023 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47377 * 300.00586 * 22 20 18 26 26 C 1.47081 * 118.23568 * 309.08542 * 10 9 8 27 27 C 1.46902 * 110.99597 * 165.47605 * 7 6 5 28 28 H 1.09001 * 109.48571 * 67.27232 * 27 7 6 29 29 C 1.52993 * 109.49469 * 307.21724 * 27 7 6 30 30 H 1.09000 * 109.46957 * 59.99966 * 1 2 3 31 31 H 1.08999 * 109.46584 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46559 * 299.99840 * 1 2 3 33 33 H 1.09002 * 109.47475 * 59.99740 * 5 3 2 34 34 H 1.09002 * 109.47415 * 300.00013 * 5 3 2 35 35 H 1.08996 * 109.46709 * 60.00067 * 6 5 3 36 36 H 1.08991 * 109.46877 * 299.99596 * 6 5 3 37 37 H 1.09000 * 109.49303 * 52.78366 * 8 7 6 38 38 H 1.09002 * 109.48651 * 292.70512 * 8 7 6 39 39 H 1.09001 * 109.63097 * 294.11796 * 9 8 7 40 40 H 1.09003 * 109.78768 * 173.62832 * 9 8 7 41 41 H 1.00898 * 110.99824 * 296.04530 * 15 13 11 42 42 H 1.00896 * 110.99761 * 59.99677 * 15 13 11 43 43 H 1.09004 * 109.47339 * 294.99866 * 16 13 11 44 44 H 1.08998 * 109.47548 * 54.99904 * 16 13 11 45 45 H 1.08997 * 109.46836 * 299.99589 * 17 16 13 46 46 H 1.08998 * 109.47199 * 59.99461 * 17 16 13 47 47 H 0.97001 * 119.99930 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.62761 * 170.62140 * 26 10 9 49 49 H 1.08997 * 109.62612 * 291.20067 * 26 10 9 50 50 H 1.09002 * 109.47238 * 67.24832 * 29 27 7 51 51 H 1.09000 * 109.47136 * 187.25172 * 29 27 7 52 52 H 1.08997 * 109.47347 * 307.24714 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4672 2.8190 0.0023 8 6 6.0162 2.3828 1.2931 9 6 7.5434 2.3045 1.1946 10 7 8.0473 3.5984 0.7097 11 6 9.0328 4.2456 1.3626 12 8 9.4329 5.3142 0.9513 13 6 9.6341 3.6441 2.6067 14 1 9.7454 2.5681 2.4729 15 7 10.9513 4.2457 2.8542 16 6 8.7163 3.9173 3.8000 17 6 9.2621 3.2019 5.0374 18 6 8.3585 3.4715 6.2130 19 1 7.4828 4.0915 6.0898 20 6 8.6496 2.9267 7.4456 21 7 9.7163 2.1722 7.5955 22 14 7.5299 3.2615 8.9029 23 1 6.1644 2.7609 8.6030 24 1 8.0589 2.5660 10.1035 25 1 7.4760 4.7229 9.1603 26 6 7.4429 4.1703 -0.5031 27 6 5.9237 4.1724 -0.3411 28 1 5.6462 4.8628 0.4554 29 6 5.2692 4.6148 -1.6513 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 3.9565 0.7805 -0.8891 34 1 3.9557 0.7809 0.8908 35 1 3.6101 3.2359 0.8911 36 1 3.6108 3.2364 -0.8889 37 1 5.6170 1.4003 1.5448 38 1 5.7378 3.0982 2.0670 39 1 7.8253 1.5167 0.4960 40 1 7.9661 2.0917 2.1765 41 1 11.5954 4.0246 2.1097 42 1 10.8748 5.2436 2.9817 43 1 8.6756 4.9901 3.9890 44 1 7.7144 3.5490 3.5797 45 1 9.3027 2.1292 4.8485 46 1 10.2640 3.5702 5.2578 47 1 9.9214 1.7891 8.4628 48 1 7.7964 5.1920 -0.6415 49 1 7.7150 3.5653 -1.3679 50 1 4.1974 4.7402 -1.4979 51 1 5.7035 5.5615 -1.9728 52 1 5.4406 3.8580 -2.4168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424167081.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:59 Heat of formation + Delta-G solvation = -142.861076 kcal Electronic energy + Delta-G solvation = -30970.560431 eV Core-core repulsion = 26775.977340 eV Total energy + Delta-G solvation = -4194.583091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.71914 -41.41421 -39.68576 -37.63294 -36.90635 -36.13827 -34.85172 -34.01184 -32.28388 -31.94109 -29.32389 -28.86563 -28.12620 -27.32281 -25.25663 -24.06874 -23.90373 -22.21221 -21.59395 -21.21996 -19.96137 -18.83966 -18.53856 -18.24615 -17.77372 -17.62072 -17.26972 -16.89572 -16.64391 -16.43673 -16.17265 -15.88057 -15.50113 -15.37510 -15.17401 -14.94362 -14.39054 -14.23834 -14.16230 -14.03257 -13.82186 -13.45160 -13.34859 -13.21728 -13.10096 -12.93070 -12.79380 -12.76872 -12.53149 -12.44402 -12.25122 -12.19085 -12.01895 -11.83253 -11.73804 -11.65096 -11.60117 -11.57455 -11.22444 -10.98429 -10.48178 -9.88027 -9.63040 -9.39744 -8.13391 -6.23357 1.15125 1.41062 1.43555 1.45090 1.51559 1.67241 1.93676 2.44276 2.79570 3.19637 3.41048 3.62260 3.68695 3.75651 3.81732 3.93944 4.04227 4.05894 4.16887 4.22494 4.26613 4.29974 4.32156 4.33468 4.37982 4.49268 4.59319 4.67759 4.70010 4.71553 4.77483 4.80917 4.85621 4.90233 4.92135 4.98140 5.08931 5.23018 5.25935 5.38278 5.42722 5.56931 5.84569 5.86351 5.92388 5.98856 6.08001 6.29978 6.31698 6.50130 6.69484 6.94507 7.02564 7.44520 8.97477 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008004 B = 0.003085 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.364183 B = 9075.021056 C =11889.908364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.464 3.536 4 O -0.544 6.544 5 C -0.103 4.103 6 C 0.063 3.937 7 N -0.520 5.520 8 C 0.035 3.965 9 C 0.104 3.896 10 N -0.608 5.608 11 C 0.487 3.513 12 O -0.584 6.584 13 C 0.086 3.914 14 H 0.112 0.888 15 N -0.818 5.818 16 C -0.080 4.080 17 C 0.043 3.957 18 C -0.544 4.544 19 H 0.052 0.948 20 C 0.006 3.994 21 N -0.927 5.927 22 Si 0.955 3.045 23 H -0.266 1.266 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.121 3.879 27 C 0.072 3.928 28 H 0.023 0.977 29 C -0.141 4.141 30 H 0.063 0.937 31 H 0.130 0.870 32 H 0.057 0.943 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.026 0.974 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.023 0.977 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.347 0.653 42 H 0.344 0.656 43 H 0.036 0.964 44 H 0.064 0.936 45 H -0.001 1.001 46 H 0.005 0.995 47 H 0.262 0.738 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.063 0.937 51 H 0.070 0.930 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.325 -5.694 -22.070 26.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.309 3.691 4 O -0.435 6.435 5 C -0.141 4.141 6 C -0.065 4.065 7 N -0.245 5.245 8 C -0.094 4.094 9 C -0.018 4.018 10 N -0.340 5.340 11 C 0.275 3.725 12 O -0.465 6.465 13 C -0.029 4.029 14 H 0.130 0.870 15 N -0.347 5.347 16 C -0.118 4.118 17 C 0.006 3.994 18 C -0.582 4.582 19 H 0.070 0.930 20 C -0.192 4.192 21 N -0.567 5.567 22 Si 0.780 3.220 23 H -0.191 1.191 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.001 4.001 27 C -0.037 4.037 28 H 0.041 0.959 29 C -0.199 4.199 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.139 0.861 35 H 0.044 0.956 36 H 0.112 0.888 37 H 0.135 0.865 38 H 0.042 0.958 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.160 0.840 42 H 0.157 0.843 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.017 0.983 46 H 0.023 0.977 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.110 0.890 50 H 0.082 0.918 51 H 0.089 0.911 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.037 -5.734 -21.852 26.598 hybrid contribution -1.101 1.533 0.940 2.108 sum -15.138 -4.202 -20.913 26.157 Atomic orbital electron populations 1.23518 0.75014 1.05607 1.02369 1.86512 1.24827 1.32974 1.83674 1.24176 0.92948 0.81003 0.70988 1.90673 1.68295 1.37441 1.47059 1.21357 0.85419 0.98925 1.08394 1.21919 0.86935 0.95274 1.02338 1.61988 1.08179 1.24072 1.30300 1.22628 0.94700 1.02444 0.89606 1.22131 0.93479 0.84441 1.01729 1.48358 1.35900 1.22362 1.27413 1.22439 0.79551 0.84688 0.85844 1.90619 1.63247 1.23353 1.69280 1.21648 0.90422 1.00395 0.90469 0.87034 1.58997 1.08116 1.17965 1.49596 1.21396 0.97054 0.99654 0.93693 1.18790 0.95497 0.94175 0.90936 1.21658 1.10239 1.30565 0.95722 0.92987 1.25832 0.96696 0.95012 1.01687 1.70086 1.27487 1.34297 1.24835 0.85659 0.79341 0.78360 0.78616 1.19106 1.20807 1.19908 1.21691 0.91269 0.99988 0.87198 1.21853 0.94600 0.88868 0.98382 0.95896 1.21851 1.00382 1.02318 0.95328 0.91832 0.85201 0.92409 0.84364 0.86071 0.95560 0.88797 0.86522 0.95817 0.87908 0.88944 0.83987 0.84264 0.94508 0.91724 0.98280 0.97674 0.92880 0.90480 0.89045 0.91826 0.91142 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -5.70 10.57 -51.43 -0.54 -6.25 16 3 C 0.46 8.16 7.96 71.23 0.57 8.72 16 4 O -0.54 -13.12 15.73 21.99 0.35 -12.77 16 5 C -0.10 -1.27 5.83 29.85 0.17 -1.10 16 6 C 0.06 1.02 4.02 86.30 0.35 1.37 16 7 N -0.52 -8.74 4.44 -870.94 -3.87 -12.61 16 8 C 0.03 0.65 5.47 86.38 0.47 1.12 16 9 C 0.10 2.12 5.96 86.35 0.51 2.63 16 10 N -0.61 -15.23 3.02 -818.83 -2.47 -17.70 16 11 C 0.49 15.43 6.95 87.66 0.61 16.03 16 12 O -0.58 -21.78 15.71 -3.05 -0.05 -21.83 16 13 C 0.09 2.87 2.29 44.17 0.10 2.97 16 14 H 0.11 3.41 6.86 -2.39 -0.02 3.39 16 15 N -0.82 -27.93 8.44 -171.79 -1.45 -29.38 16 16 C -0.08 -3.21 4.45 30.59 0.14 -3.07 16 17 C 0.04 2.21 4.86 29.85 0.15 2.35 16 18 C -0.54 -30.56 9.11 25.60 0.23 -30.33 16 19 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 20 C 0.01 0.34 5.46 84.65 0.46 0.80 16 21 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 22 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 26 C 0.12 2.61 5.85 86.20 0.50 3.12 16 27 C 0.07 1.38 2.59 44.84 0.12 1.50 16 28 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 29 C -0.14 -2.00 8.51 71.98 0.61 -1.38 16 30 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 33 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.12 1.23 6.56 -2.39 -0.02 1.21 16 35 H 0.03 0.54 8.03 -2.39 -0.02 0.52 16 36 H 0.09 1.51 5.53 -2.39 -0.01 1.49 16 37 H 0.12 1.62 6.38 -2.39 -0.02 1.60 16 38 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.09 2.12 4.85 -2.39 -0.01 2.11 16 41 H 0.35 10.14 9.06 -89.70 -0.81 9.33 16 42 H 0.34 12.15 8.58 -89.70 -0.77 11.38 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.06 2.42 6.93 -2.39 -0.02 2.41 16 45 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.00 0.27 7.75 -2.39 -0.02 0.26 16 47 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 48 H 0.08 1.94 7.06 -2.39 -0.02 1.92 16 49 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.06 0.90 6.46 -2.39 -0.02 0.89 16 51 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -73.91 409.71 -0.18 -74.09 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -0.65 Total: 29.54 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 6.19 Total: 6.24 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -7.50 Total: -115.19 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.25 Total: -40.84 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -73.91 -0.18 -74.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167081.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.769 kcal (2) G-P(sol) polarization free energy of solvation -73.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds