Wall clock time and date at job start Wed Apr 1 2020 01:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99904 * 2 1 4 4 O 1.20819 * 120.00296 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99572 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47073 * 180.02562 * 5 3 2 7 7 N 1.46892 * 109.47201 * 179.97438 * 6 5 3 8 8 C 1.46903 * 110.99927 * 65.67392 * 7 6 5 9 9 C 1.53243 * 109.34207 * 187.25112 * 8 7 6 10 10 N 1.47080 * 108.51907 * 306.17165 * 9 8 7 11 11 C 1.34783 * 120.87885 * 231.20382 * 10 9 8 12 12 O 1.21280 * 120.00000 * 180.02562 * 11 10 9 13 13 C 1.50695 * 119.99714 * 0.02562 * 11 10 9 14 14 H 1.08999 * 109.47431 * 39.99881 * 13 11 10 15 15 N 1.46908 * 109.46958 * 160.00038 * 13 11 10 16 16 C 1.53004 * 109.47223 * 279.99770 * 13 11 10 17 17 C 1.52996 * 109.47365 * 175.00238 * 16 13 11 18 18 C 1.50697 * 109.46993 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00254 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99702 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99736 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00327 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47194 * 89.99432 * 22 20 18 24 24 H 1.48496 * 109.47293 * 210.00078 * 22 20 18 25 25 H 1.48508 * 109.46903 * 329.99510 * 22 20 18 26 26 C 1.47082 * 118.24080 * 51.18084 * 10 9 8 27 27 C 1.46903 * 111.00005 * 189.96736 * 7 6 5 28 28 H 1.08993 * 109.49940 * 292.71056 * 27 7 6 29 29 C 1.53001 * 109.48644 * 52.79287 * 27 7 6 30 30 H 1.08994 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47417 * 300.00729 * 1 2 3 32 32 H 1.09001 * 109.46619 * 60.00070 * 1 2 3 33 33 H 1.08992 * 109.47631 * 59.99915 * 5 3 2 34 34 H 1.09007 * 109.47103 * 299.99698 * 5 3 2 35 35 H 1.09003 * 109.47033 * 300.00209 * 6 5 3 36 36 H 1.09002 * 109.47009 * 59.99481 * 6 5 3 37 37 H 1.09002 * 109.49192 * 307.20928 * 8 7 6 38 38 H 1.08997 * 109.49431 * 67.26303 * 8 7 6 39 39 H 1.08997 * 109.62434 * 65.87429 * 9 8 7 40 40 H 1.08995 * 109.62721 * 186.45948 * 9 8 7 41 41 H 1.00896 * 110.99430 * 296.04171 * 15 13 11 42 42 H 1.00896 * 110.99912 * 59.99486 * 15 13 11 43 43 H 1.09000 * 109.46692 * 295.00396 * 16 13 11 44 44 H 1.09002 * 109.46933 * 54.99860 * 16 13 11 45 45 H 1.09000 * 109.47235 * 300.00302 * 17 16 13 46 46 H 1.09003 * 109.46808 * 60.00381 * 17 16 13 47 47 H 0.97003 * 120.00300 * 180.02562 * 21 20 18 48 48 H 1.08996 * 109.62431 * 68.52980 * 26 10 9 49 49 H 1.08999 * 109.62859 * 188.90856 * 26 10 9 50 50 H 1.09001 * 109.47464 * 52.52678 * 29 27 7 51 51 H 1.09006 * 109.46951 * 172.52577 * 29 27 7 52 52 H 1.08997 * 109.47064 * 292.51446 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4671 2.8189 0.0023 8 6 6.0234 2.2824 -1.2470 9 6 7.5500 2.2124 -1.1340 10 7 8.0514 3.5406 -0.7498 11 6 9.0406 4.1347 -1.4464 12 8 9.4422 5.2301 -1.1153 13 6 9.6476 3.4377 -2.6367 14 1 8.8620 2.9422 -3.2072 15 7 10.3240 4.4243 -3.4895 16 6 10.6621 2.3980 -2.1563 17 6 11.1864 1.6051 -3.3551 18 6 12.1861 0.5815 -2.8820 19 1 12.4235 0.5040 -1.8312 20 6 12.7970 -0.2567 -3.7904 21 7 13.6691 -1.1503 -3.3775 22 14 12.3860 -0.1232 -5.6077 23 1 13.3093 0.8435 -6.2543 24 1 12.5352 -1.4546 -6.2481 25 1 10.9864 0.3477 -5.7653 26 6 7.4444 4.2037 0.4143 27 6 5.9220 4.1953 0.2402 28 1 5.6497 4.8205 -0.6100 29 6 5.2602 4.7396 1.5078 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 3.9564 0.7806 -0.8890 34 1 3.9557 0.7809 0.8909 35 1 3.6108 3.2364 -0.8889 36 1 3.6101 3.2360 0.8910 37 1 5.6255 1.2829 -1.4227 38 1 5.7492 2.9340 -2.0766 39 1 7.8277 1.4823 -0.3738 40 1 7.9755 1.9243 -2.0953 41 1 9.6639 5.0847 -3.8717 42 1 11.0571 4.8977 -2.9831 43 1 11.4929 2.9022 -1.6627 44 1 10.1805 1.7181 -1.4535 45 1 10.3556 1.1009 -3.8487 46 1 11.6680 2.2850 -4.0579 47 1 14.0992 -1.7398 -4.0166 48 1 7.7121 3.6650 1.3232 49 1 7.8029 5.2310 0.4787 50 1 5.4237 4.0437 2.3306 51 1 5.6957 5.7071 1.7582 52 1 4.1900 4.8562 1.3375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424167086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:07 Heat of formation + Delta-G solvation = -114.797941 kcal Electronic energy + Delta-G solvation = -30728.192337 eV Core-core repulsion = 26534.826156 eV Total energy + Delta-G solvation = -4193.366182 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.97843 -40.48371 -38.78615 -36.98653 -35.46155 -35.22159 -33.35501 -32.74226 -31.55696 -30.50277 -28.65343 -27.91978 -27.47434 -26.06008 -23.99573 -23.15816 -22.83332 -20.99274 -20.56834 -20.01637 -19.00139 -18.13948 -17.37426 -17.15235 -17.00483 -16.72836 -16.24425 -15.86367 -15.66342 -15.20464 -15.04283 -14.77084 -14.64967 -14.24647 -14.08808 -13.80499 -13.55824 -13.45120 -13.11492 -12.69370 -12.65286 -12.57865 -12.45857 -12.38345 -12.26776 -12.19166 -11.79473 -11.63292 -11.43082 -11.26222 -11.24474 -11.07334 -10.94992 -10.90892 -10.86176 -10.29218 -9.99996 -9.71489 -9.59334 -9.11852 -8.98436 -8.55930 -8.51343 -8.39382 -5.99456 -3.97018 1.76858 2.21068 2.66736 2.91964 3.37055 3.43719 3.47091 3.48413 4.23434 4.37749 4.44435 4.50884 4.56073 4.58890 4.66485 4.68022 4.74214 4.83851 4.91428 4.94932 5.00091 5.03033 5.09000 5.11517 5.28486 5.32181 5.34557 5.36704 5.43010 5.43891 5.58849 5.62405 5.65229 5.70098 5.77999 5.91310 5.95352 6.27611 6.35097 6.47910 6.57375 6.64905 6.86173 7.22162 7.29641 7.36977 7.40861 7.56188 7.64820 7.86025 8.18480 8.58071 9.05495 9.63464 11.13999 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.002515 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.289557 B =11130.819639 C =12961.781457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.464 3.536 4 O -0.510 6.510 5 C -0.114 4.114 6 C 0.062 3.938 7 N -0.532 5.532 8 C 0.034 3.966 9 C 0.107 3.893 10 N -0.613 5.613 11 C 0.487 3.513 12 O -0.553 6.553 13 C 0.074 3.926 14 H 0.097 0.903 15 N -0.811 5.811 16 C -0.088 4.088 17 C -0.003 4.003 18 C -0.520 4.520 19 H 0.069 0.931 20 C 0.065 3.935 21 N -0.906 5.906 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.265 1.265 26 C 0.119 3.881 27 C 0.072 3.928 28 H 0.046 0.954 29 C -0.149 4.149 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.334 0.666 42 H 0.350 0.650 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.012 0.988 46 H 0.029 0.971 47 H 0.262 0.738 48 H 0.074 0.926 49 H 0.093 0.907 50 H 0.070 0.930 51 H 0.065 0.935 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.446 6.311 8.069 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.398 6.398 5 C -0.152 4.152 6 C -0.066 4.066 7 N -0.258 5.258 8 C -0.094 4.094 9 C -0.016 4.016 10 N -0.347 5.347 11 C 0.274 3.726 12 O -0.431 6.431 13 C -0.041 4.041 14 H 0.115 0.885 15 N -0.339 5.339 16 C -0.126 4.126 17 C -0.041 4.041 18 C -0.558 4.558 19 H 0.087 0.913 20 C -0.135 4.135 21 N -0.545 5.545 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.189 1.189 26 C -0.004 4.004 27 C -0.036 4.036 28 H 0.064 0.936 29 C -0.207 4.207 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.146 0.854 42 H 0.164 0.836 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.030 0.970 46 H 0.047 0.953 47 H 0.072 0.928 48 H 0.093 0.907 49 H 0.111 0.889 50 H 0.089 0.911 51 H 0.084 0.916 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.927 6.143 8.087 27.845 hybrid contribution -1.112 1.072 -0.878 1.777 sum -27.039 7.215 7.209 28.899 Atomic orbital electron populations 1.23282 0.76143 1.03845 1.02572 1.86523 1.23602 1.33417 1.84010 1.23777 0.92191 0.81316 0.72050 1.90680 1.67424 1.36356 1.45372 1.21397 0.86914 0.99913 1.06928 1.21937 0.87542 0.94098 1.02992 1.61934 1.07687 1.21032 1.35100 1.22642 0.95487 1.00968 0.90350 1.21983 0.92408 0.84350 1.02828 1.48283 1.36875 1.19226 1.30299 1.22624 0.78531 0.86063 0.85354 1.90640 1.61488 1.21246 1.69750 1.21895 0.97803 0.94790 0.89654 0.88484 1.59056 1.15556 1.21437 1.37857 1.21491 0.96072 0.94787 1.00281 1.19477 0.96182 0.94883 0.93534 1.21168 1.22632 1.16147 0.95875 0.91286 1.25019 0.94643 0.94976 0.98896 1.69924 1.28360 1.21507 1.34725 0.86737 0.79641 0.76978 0.85637 1.20329 1.21740 1.18911 1.21701 0.90353 0.99566 0.88775 1.21967 0.95314 0.88143 0.98216 0.93612 1.21901 1.00417 1.01356 0.97022 0.87956 0.91843 0.91875 0.87344 0.86385 0.93807 0.88967 0.88909 0.94097 0.89783 0.88186 0.85410 0.83585 0.92209 0.92035 0.96981 0.95278 0.92847 0.90728 0.88857 0.91139 0.91586 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.83 10.57 -39.27 -0.41 -3.24 16 3 C 0.46 3.92 7.96 36.00 0.29 4.21 16 4 O -0.51 -5.67 15.73 -18.74 -0.29 -5.97 16 5 C -0.11 -0.73 5.74 -27.88 -0.16 -0.89 16 6 C 0.06 0.47 3.94 -3.83 -0.02 0.46 16 7 N -0.53 -4.44 4.48 -226.35 -1.01 -5.46 16 8 C 0.03 0.29 5.46 -3.70 -0.02 0.27 16 9 C 0.11 1.13 5.73 -3.60 -0.02 1.11 16 10 N -0.61 -7.68 3.01 -172.46 -0.52 -8.20 16 11 C 0.49 7.44 6.95 -10.98 -0.08 7.37 16 12 O -0.55 -9.94 15.70 5.56 0.09 -9.85 16 13 C 0.07 1.16 2.30 -68.86 -0.16 1.00 16 14 H 0.10 1.38 6.52 -51.93 -0.34 1.04 16 15 N -0.81 -12.68 8.44 -5.65 -0.05 -12.73 16 16 C -0.09 -1.67 4.58 -26.73 -0.12 -1.79 16 17 C 0.00 -0.08 3.93 -27.89 -0.11 -0.19 16 18 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 19 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 20 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 21 N -0.91 -27.89 13.96 55.43 0.77 -27.12 16 22 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 26 C 0.12 1.32 5.88 -3.60 -0.02 1.30 16 27 C 0.07 0.66 2.60 -67.59 -0.18 0.48 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 C -0.15 -1.09 8.47 37.16 0.31 -0.77 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.34 8.13 -51.93 -0.42 -0.09 16 32 H 0.06 0.35 8.13 -51.93 -0.42 -0.08 16 33 H 0.11 0.57 6.40 -51.93 -0.33 0.24 16 34 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 36 H 0.09 0.72 5.76 -51.93 -0.30 0.42 16 37 H 0.09 0.61 6.16 -51.93 -0.32 0.29 16 38 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.08 5.33 -51.93 -0.28 0.80 16 41 H 0.33 4.52 9.06 -39.29 -0.36 4.17 16 42 H 0.35 5.63 8.58 -39.29 -0.34 5.30 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.12 7.25 -51.93 -0.38 0.74 16 45 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 46 H 0.03 0.69 7.18 -51.93 -0.37 0.32 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.09 1.15 7.06 -51.93 -0.37 0.78 16 50 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 LS Contribution 406.32 15.07 6.12 6.12 Total: -1.00 -34.68 406.32 -8.36 -43.05 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.75 Total: 5.64 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 0.36 Total: 0.66 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.81 Total: -53.51 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.62 Total: -19.06 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.68 -8.36 -43.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.752 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds