Wall clock time and date at job start Wed Apr 1 2020 01:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99904 * 2 1 4 4 O 1.20819 * 120.00296 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99572 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47073 * 180.02562 * 5 3 2 7 7 N 1.46892 * 109.47201 * 179.97438 * 6 5 3 8 8 C 1.46903 * 110.99927 * 65.67392 * 7 6 5 9 9 C 1.53243 * 109.34207 * 187.25112 * 8 7 6 10 10 N 1.47080 * 108.51907 * 306.17165 * 9 8 7 11 11 C 1.34783 * 120.87885 * 231.20382 * 10 9 8 12 12 O 1.21280 * 120.00000 * 180.02562 * 11 10 9 13 13 C 1.50695 * 119.99714 * 0.02562 * 11 10 9 14 14 H 1.08999 * 109.47431 * 39.99881 * 13 11 10 15 15 N 1.46908 * 109.46958 * 160.00038 * 13 11 10 16 16 C 1.53004 * 109.47223 * 279.99770 * 13 11 10 17 17 C 1.52996 * 109.47365 * 175.00238 * 16 13 11 18 18 C 1.50697 * 109.46993 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00254 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99702 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99736 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00327 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47194 * 89.99432 * 22 20 18 24 24 H 1.48496 * 109.47293 * 210.00078 * 22 20 18 25 25 H 1.48508 * 109.46903 * 329.99510 * 22 20 18 26 26 C 1.47082 * 118.24080 * 51.18084 * 10 9 8 27 27 C 1.46903 * 111.00005 * 189.96736 * 7 6 5 28 28 H 1.08993 * 109.49940 * 292.71056 * 27 7 6 29 29 C 1.53001 * 109.48644 * 52.79287 * 27 7 6 30 30 H 1.08994 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47417 * 300.00729 * 1 2 3 32 32 H 1.09001 * 109.46619 * 60.00070 * 1 2 3 33 33 H 1.08992 * 109.47631 * 59.99915 * 5 3 2 34 34 H 1.09007 * 109.47103 * 299.99698 * 5 3 2 35 35 H 1.09003 * 109.47033 * 300.00209 * 6 5 3 36 36 H 1.09002 * 109.47009 * 59.99481 * 6 5 3 37 37 H 1.09002 * 109.49192 * 307.20928 * 8 7 6 38 38 H 1.08997 * 109.49431 * 67.26303 * 8 7 6 39 39 H 1.08997 * 109.62434 * 65.87429 * 9 8 7 40 40 H 1.08995 * 109.62721 * 186.45948 * 9 8 7 41 41 H 1.00896 * 110.99430 * 296.04171 * 15 13 11 42 42 H 1.00896 * 110.99912 * 59.99486 * 15 13 11 43 43 H 1.09000 * 109.46692 * 295.00396 * 16 13 11 44 44 H 1.09002 * 109.46933 * 54.99860 * 16 13 11 45 45 H 1.09000 * 109.47235 * 300.00302 * 17 16 13 46 46 H 1.09003 * 109.46808 * 60.00381 * 17 16 13 47 47 H 0.97003 * 120.00300 * 180.02562 * 21 20 18 48 48 H 1.08996 * 109.62431 * 68.52980 * 26 10 9 49 49 H 1.08999 * 109.62859 * 188.90856 * 26 10 9 50 50 H 1.09001 * 109.47464 * 52.52678 * 29 27 7 51 51 H 1.09006 * 109.46951 * 172.52577 * 29 27 7 52 52 H 1.08997 * 109.47064 * 292.51446 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4671 2.8189 0.0023 8 6 6.0234 2.2824 -1.2470 9 6 7.5500 2.2124 -1.1340 10 7 8.0514 3.5406 -0.7498 11 6 9.0406 4.1347 -1.4464 12 8 9.4422 5.2301 -1.1153 13 6 9.6476 3.4377 -2.6367 14 1 8.8620 2.9422 -3.2072 15 7 10.3240 4.4243 -3.4895 16 6 10.6621 2.3980 -2.1563 17 6 11.1864 1.6051 -3.3551 18 6 12.1861 0.5815 -2.8820 19 1 12.4235 0.5040 -1.8312 20 6 12.7970 -0.2567 -3.7904 21 7 13.6691 -1.1503 -3.3775 22 14 12.3860 -0.1232 -5.6077 23 1 13.3093 0.8435 -6.2543 24 1 12.5352 -1.4546 -6.2481 25 1 10.9864 0.3477 -5.7653 26 6 7.4444 4.2037 0.4143 27 6 5.9220 4.1953 0.2402 28 1 5.6497 4.8205 -0.6100 29 6 5.2602 4.7396 1.5078 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 3.9564 0.7806 -0.8890 34 1 3.9557 0.7809 0.8909 35 1 3.6108 3.2364 -0.8889 36 1 3.6101 3.2360 0.8910 37 1 5.6255 1.2829 -1.4227 38 1 5.7492 2.9340 -2.0766 39 1 7.8277 1.4823 -0.3738 40 1 7.9755 1.9243 -2.0953 41 1 9.6639 5.0847 -3.8717 42 1 11.0571 4.8977 -2.9831 43 1 11.4929 2.9022 -1.6627 44 1 10.1805 1.7181 -1.4535 45 1 10.3556 1.1009 -3.8487 46 1 11.6680 2.2850 -4.0579 47 1 14.0992 -1.7398 -4.0166 48 1 7.7121 3.6650 1.3232 49 1 7.8029 5.2310 0.4787 50 1 5.4237 4.0437 2.3306 51 1 5.6957 5.7071 1.7582 52 1 4.1900 4.8562 1.3375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424167086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:06 Heat of formation + Delta-G solvation = -140.694019 kcal Electronic energy + Delta-G solvation = -30729.315276 eV Core-core repulsion = 26534.826156 eV Total energy + Delta-G solvation = -4194.489120 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71437 -41.41015 -39.69535 -37.63373 -36.92743 -36.14461 -34.80351 -34.02461 -32.31284 -32.21273 -29.36686 -28.96572 -28.15355 -27.40179 -25.14468 -23.97579 -23.89068 -22.10582 -21.55476 -21.09206 -20.08145 -18.91496 -18.76017 -18.35689 -17.78883 -17.62058 -17.27102 -16.93170 -16.58143 -16.26066 -16.10785 -15.80570 -15.54075 -15.46790 -15.10351 -14.98073 -14.70481 -14.30884 -14.15359 -14.06366 -13.85829 -13.59480 -13.37271 -13.21342 -13.11218 -12.93580 -12.80522 -12.77906 -12.51435 -12.38242 -12.21093 -12.05903 -11.84391 -11.82601 -11.74730 -11.64437 -11.59076 -11.56860 -11.23773 -11.08287 -10.68346 -9.87541 -9.67891 -9.36461 -8.21835 -6.24855 1.14850 1.43752 1.45236 1.45906 1.57584 1.67871 1.92797 2.43893 2.79710 3.14863 3.39723 3.60932 3.67654 3.75185 3.81396 3.92304 3.99790 4.04108 4.15491 4.22575 4.23395 4.29137 4.32109 4.32578 4.40053 4.48095 4.57382 4.68868 4.71512 4.71691 4.76066 4.80661 4.85003 4.85594 4.90039 4.99546 5.07678 5.15275 5.26011 5.38377 5.41198 5.52587 5.67284 5.75448 5.88519 5.95165 6.04939 6.31248 6.35832 6.47718 6.69348 6.83614 7.02478 7.39433 8.94981 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.002515 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.289557 B =11130.819639 C =12961.781457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.465 3.535 4 O -0.543 6.543 5 C -0.107 4.107 6 C 0.068 3.932 7 N -0.530 5.530 8 C 0.037 3.963 9 C 0.102 3.898 10 N -0.608 5.608 11 C 0.486 3.514 12 O -0.585 6.585 13 C 0.084 3.916 14 H 0.119 0.881 15 N -0.818 5.818 16 C -0.078 4.078 17 C 0.004 3.996 18 C -0.528 4.528 19 H 0.028 0.972 20 C 0.002 3.998 21 N -0.955 5.955 22 Si 0.953 3.047 23 H -0.275 1.275 24 H -0.288 1.288 25 H -0.238 1.238 26 C 0.119 3.881 27 C 0.079 3.921 28 H 0.034 0.966 29 C -0.143 4.143 30 H 0.128 0.872 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.033 0.967 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.038 0.962 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.347 0.653 42 H 0.345 0.655 43 H 0.037 0.963 44 H 0.067 0.933 45 H 0.027 0.973 46 H 0.025 0.975 47 H 0.264 0.736 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.074 0.926 51 H 0.069 0.931 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.786 5.972 7.053 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.310 3.690 4 O -0.433 6.433 5 C -0.145 4.145 6 C -0.060 4.060 7 N -0.256 5.256 8 C -0.091 4.091 9 C -0.021 4.021 10 N -0.340 5.340 11 C 0.273 3.727 12 O -0.466 6.466 13 C -0.031 4.031 14 H 0.137 0.863 15 N -0.347 5.347 16 C -0.116 4.116 17 C -0.033 4.033 18 C -0.566 4.566 19 H 0.046 0.954 20 C -0.194 4.194 21 N -0.596 5.596 22 Si 0.776 3.224 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.161 1.161 26 C -0.004 4.004 27 C -0.030 4.030 28 H 0.052 0.948 29 C -0.201 4.201 30 H 0.147 0.853 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.052 0.948 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.056 0.944 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.044 0.956 47 H 0.073 0.927 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.093 0.907 51 H 0.088 0.912 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -28.318 5.786 7.087 29.760 hybrid contribution -0.388 1.128 -0.441 1.272 sum -28.707 6.915 6.646 30.266 Atomic orbital electron populations 1.23515 0.74975 1.05579 1.02425 1.86517 1.24863 1.33065 1.83659 1.24136 0.92875 0.80990 0.71015 1.90670 1.68260 1.37348 1.47039 1.21402 0.85563 0.99163 1.08337 1.21869 0.86700 0.94996 1.02431 1.61940 1.08193 1.20338 1.35091 1.22657 0.93895 1.02339 0.90207 1.22170 0.93922 0.83110 1.02875 1.48365 1.35888 1.19796 1.29976 1.22466 0.79064 0.85747 0.85424 1.90628 1.62763 1.22653 1.70539 1.21698 0.97175 0.94077 0.90156 0.86314 1.59054 1.15969 1.21879 1.37759 1.21265 0.96337 0.95309 0.98730 1.19356 0.95238 0.93852 0.94863 1.21534 1.23617 1.17287 0.94175 0.95360 1.26002 0.94482 0.94544 1.04352 1.70083 1.30025 1.22860 1.36639 0.85622 0.80710 0.77105 0.78923 1.20073 1.21379 1.16146 1.21776 0.91668 0.98658 0.88326 1.21866 0.93847 0.88616 0.98683 0.94751 1.21859 1.00525 1.01557 0.96173 0.85341 0.91952 0.92127 0.85720 0.84972 0.94832 0.89189 0.86413 0.94364 0.89485 0.88153 0.83941 0.84099 0.94410 0.91397 0.95495 0.95634 0.92708 0.90271 0.90333 0.90713 0.91225 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.36 -5.08 10.57 -51.45 -0.54 -5.62 16 3 C 0.47 7.09 7.96 71.24 0.57 7.66 16 4 O -0.54 -11.56 15.73 21.98 0.35 -11.22 16 5 C -0.11 -1.09 5.74 29.85 0.17 -0.92 16 6 C 0.07 0.89 3.94 86.31 0.34 1.23 16 7 N -0.53 -7.67 4.48 -870.03 -3.89 -11.56 16 8 C 0.04 0.53 5.46 86.38 0.47 1.00 16 9 C 0.10 1.90 5.73 86.35 0.49 2.39 16 10 N -0.61 -14.47 3.01 -817.94 -2.46 -16.93 16 11 C 0.49 14.43 6.95 87.65 0.61 15.03 16 12 O -0.59 -20.93 15.70 -3.03 -0.05 -20.98 16 13 C 0.08 2.50 2.30 44.17 0.10 2.61 16 14 H 0.12 3.03 6.52 -2.39 -0.02 3.01 16 15 N -0.82 -24.42 8.44 -171.79 -1.45 -25.87 16 16 C -0.08 -2.91 4.58 30.59 0.14 -2.77 16 17 C 0.00 0.20 3.93 29.85 0.12 0.31 16 18 C -0.53 -30.00 9.66 25.60 0.25 -29.75 16 19 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 20 C 0.00 0.14 5.47 84.66 0.46 0.60 16 21 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 22 Si 0.95 44.09 27.47 68.60 1.88 45.97 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 26 C 0.12 2.51 5.88 86.35 0.51 3.02 16 27 C 0.08 1.32 2.60 44.99 0.12 1.44 16 28 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 29 C -0.14 -1.88 8.47 71.98 0.61 -1.27 16 30 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 32 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 33 H 0.12 0.89 6.40 -2.39 -0.02 0.87 16 34 H 0.13 1.03 8.14 -2.38 -0.02 1.02 16 35 H 0.03 0.53 8.08 -2.39 -0.02 0.51 16 36 H 0.09 1.25 5.76 -2.39 -0.01 1.24 16 37 H 0.12 1.10 6.16 -2.39 -0.01 1.09 16 38 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.10 1.89 5.33 -2.39 -0.01 1.87 16 41 H 0.35 8.80 9.06 -89.70 -0.81 7.99 16 42 H 0.35 10.95 8.58 -89.70 -0.77 10.18 16 43 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.07 2.42 7.25 -2.39 -0.02 2.40 16 45 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 46 H 0.03 1.17 7.18 -2.39 -0.02 1.15 16 47 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 48 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.08 1.92 7.06 -2.39 -0.02 1.91 16 50 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 52 H 0.07 0.82 6.57 -2.39 -0.02 0.81 16 Total: -1.00 -75.96 406.32 -0.41 -76.38 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -0.70 Total: 27.41 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.15 Total: 2.04 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -7.51 Total: -113.98 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.25 Total: -37.82 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.97 kcal Total: -75.96 -0.41 -76.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.317 kcal (2) G-P(sol) polarization free energy of solvation -75.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds