Wall clock time and date at job start Wed Apr 1 2020 00:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 114.00012 * 2 1 4 4 C 1.52991 * 109.47073 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47288 * 64.99550 * 4 3 2 6 6 C 1.36938 * 119.99708 * 96.01146 * 5 4 3 7 7 H 1.07997 * 120.00454 * 8.46191 * 6 5 4 8 8 C 1.38820 * 120.00050 * 188.45645 * 6 5 4 9 9 N 1.31619 * 119.99301 * 23.95518 * 8 6 5 10 10 Si 1.86796 * 120.00105 * 203.95515 * 8 6 5 11 11 H 1.48491 * 109.47293 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47093 * 120.00270 * 10 8 6 13 13 H 1.48501 * 109.47272 * 239.99885 * 10 8 6 14 14 C 1.46501 * 120.00455 * 276.01028 * 5 4 3 15 15 C 1.50697 * 109.46901 * 89.99891 * 14 5 4 16 16 O 1.21242 * 120.00050 * 0.02562 * 15 14 5 17 17 N 1.34780 * 119.99976 * 180.02562 * 15 14 5 18 18 C 1.34778 * 119.99850 * 180.02562 * 17 15 14 19 19 O 1.21532 * 120.00199 * 359.97438 * 18 17 15 20 20 N 1.34780 * 119.99850 * 179.97438 * 18 17 15 21 21 C 1.46497 * 120.00059 * 179.97438 * 20 18 17 22 22 H 1.09003 * 109.46976 * 34.99590 * 21 20 18 23 23 C 1.53001 * 109.47282 * 275.00157 * 21 20 18 24 24 C 1.52997 * 109.47178 * 180.02562 * 23 21 20 25 25 C 1.52995 * 109.47407 * 59.99450 * 24 23 21 26 26 C 1.53001 * 109.47400 * 300.00413 * 25 24 23 27 27 C 1.52995 * 109.47231 * 154.99652 * 21 20 18 28 28 H 1.09003 * 109.46701 * 60.00270 * 27 21 20 29 29 C 1.53001 * 109.47400 * 300.00433 * 27 21 20 30 30 H 1.08998 * 109.47204 * 300.00425 * 1 2 3 31 31 H 1.08995 * 109.46710 * 60.00124 * 1 2 3 32 32 H 1.08999 * 109.46757 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46671 * 299.99978 * 3 2 1 34 34 H 1.08998 * 109.47079 * 59.99598 * 3 2 1 35 35 H 1.08998 * 109.47445 * 184.99646 * 4 3 2 36 36 H 1.08998 * 109.47206 * 304.99791 * 4 3 2 37 37 H 0.97001 * 119.99711 * 179.97438 * 9 8 6 38 38 H 1.08994 * 109.47552 * 209.99854 * 14 5 4 39 39 H 1.09000 * 109.46998 * 330.00309 * 14 5 4 40 40 H 0.96994 * 119.99853 * 359.97438 * 17 15 14 41 41 H 0.96994 * 119.99853 * 359.97438 * 20 18 17 42 42 H 1.09003 * 109.47061 * 299.99982 * 23 21 20 43 43 H 1.09002 * 109.47140 * 59.99953 * 23 21 20 44 44 H 1.09003 * 109.46903 * 299.99325 * 24 23 21 45 45 H 1.09004 * 109.47156 * 180.02562 * 24 23 21 46 46 H 1.08998 * 109.47360 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.46701 * 60.00250 * 25 24 23 48 48 H 1.09003 * 109.46652 * 299.99967 * 26 25 24 49 49 H 1.09002 * 109.47140 * 179.97438 * 26 25 24 50 50 H 1.08994 * 109.47263 * 59.99693 * 29 27 21 51 51 H 1.09002 * 109.47140 * 179.97438 * 29 27 21 52 52 H 1.09003 * 109.46652 * 299.99967 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.3856 1.3475 -2.2968 7 1 4.5138 2.4107 -2.1572 8 6 4.6356 0.7751 -3.5365 9 7 4.0618 -0.3634 -3.8633 10 14 5.7863 1.6208 -4.7407 11 1 6.2985 2.8770 -4.1370 12 1 6.9260 0.7208 -5.0515 13 1 5.0496 1.9363 -5.9910 14 6 3.9805 -0.8951 -1.3833 15 6 2.6490 -1.3543 -1.9191 16 8 1.7826 -0.5430 -2.1662 17 7 2.4212 -2.6669 -2.1234 18 6 1.2304 -3.0775 -2.6031 19 8 0.3619 -2.2642 -2.8508 20 7 1.0028 -4.3900 -2.8079 21 6 -0.2917 -4.8364 -3.3287 22 1 -0.6739 -4.0980 -4.0336 23 6 -1.2796 -4.9958 -2.1714 24 6 -2.6313 -5.4626 -2.7152 25 6 -2.4584 -6.8059 -3.4268 26 6 -1.4705 -6.6465 -4.5842 27 6 -0.1192 -6.1796 -4.0407 28 1 0.2630 -6.9179 -3.3359 29 6 0.8687 -6.0202 -5.1981 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8464 0.8899 35 1 3.9785 2.1765 0.0901 36 1 3.8508 0.5686 0.8427 37 1 4.2361 -0.7632 -4.7298 38 1 4.7716 -1.1955 -2.0703 39 1 4.1553 -1.3481 -0.4074 40 1 3.1144 -3.3159 -1.9261 41 1 1.6960 -5.0390 -2.6105 42 1 -0.8974 -5.7342 -1.4665 43 1 -1.4025 -4.0388 -1.6642 44 1 -3.0138 -4.7245 -3.4202 45 1 -3.3353 -5.5757 -1.8907 46 1 -3.4215 -7.1387 -3.8139 47 1 -2.0760 -7.5439 -2.7217 48 1 -1.8529 -5.9084 -5.2893 49 1 -1.3470 -7.6037 -5.0909 50 1 1.8318 -5.6881 -4.8106 51 1 0.9919 -6.9773 -5.7051 52 1 0.4864 -5.2818 -5.9029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459545368.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:34 Heat of formation + Delta-G solvation = -89.438223 kcal Electronic energy + Delta-G solvation = -32723.713500 eV Core-core repulsion = 28531.446998 eV Total energy + Delta-G solvation = -4192.266502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.17379 -38.82307 -37.36679 -36.36551 -34.84487 -33.81189 -32.97612 -32.43312 -31.47883 -29.44385 -28.67995 -26.90216 -26.22024 -25.36745 -23.51942 -22.80229 -21.49309 -21.04422 -20.22759 -20.05208 -19.12578 -17.99717 -16.73314 -16.21368 -15.44263 -15.34847 -15.20725 -14.93225 -14.58438 -14.49246 -14.38875 -14.31851 -13.93501 -13.65958 -13.52861 -13.33769 -13.15417 -12.84082 -12.50960 -12.33119 -12.17037 -11.98745 -11.63557 -11.51337 -11.40390 -11.25456 -11.04735 -10.97902 -10.91454 -10.65128 -10.64011 -10.51932 -10.34321 -10.19195 -10.13234 -9.97456 -9.81044 -9.67369 -8.79458 -8.63134 -8.58329 -8.38677 -7.93604 -6.89151 -5.79417 -3.05188 3.24069 3.40585 3.48973 3.51165 3.61576 4.50369 4.53104 4.57666 4.69636 4.79669 4.82718 4.94400 4.98568 5.12041 5.31475 5.37230 5.39711 5.40452 5.43627 5.46608 5.61432 5.65374 5.80483 5.91348 5.91851 5.93882 6.03112 6.07171 6.09789 6.13625 6.19786 6.22537 6.24875 6.29054 6.30891 6.40443 6.43429 6.51430 6.63240 6.67199 6.89980 6.96392 7.19748 7.20412 7.77140 7.85732 8.18668 8.26721 8.48243 9.16318 9.36783 9.79766 9.99876 10.28979 11.30364 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.003582 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.927346 B = 7815.497827 C = 9331.001359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.367 6.367 3 C 0.047 3.953 4 C 0.149 3.851 5 N -0.569 5.569 6 C -0.247 4.247 7 H 0.078 0.922 8 C -0.001 4.001 9 N -0.897 5.897 10 Si 0.903 3.097 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.294 1.294 14 C 0.175 3.825 15 C 0.530 3.470 16 O -0.438 6.438 17 N -0.697 5.697 18 C 0.695 3.305 19 O -0.542 6.542 20 N -0.749 5.749 21 C 0.171 3.829 22 H 0.085 0.915 23 C -0.129 4.129 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.111 4.111 27 C -0.097 4.097 28 H 0.072 0.928 29 C -0.147 4.147 30 H 0.014 0.986 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.017 0.983 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.252 0.748 38 H 0.101 0.899 39 H 0.037 0.963 40 H 0.389 0.611 41 H 0.389 0.611 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.059 0.941 51 H 0.052 0.948 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.638 -14.949 4.549 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 O -0.285 6.285 3 C -0.033 4.033 4 C 0.022 3.978 5 N -0.288 5.288 6 C -0.376 4.376 7 H 0.096 0.904 8 C -0.198 4.198 9 N -0.543 5.543 10 Si 0.734 3.266 11 H -0.205 1.205 12 H -0.217 1.217 13 H -0.222 1.222 14 C 0.043 3.957 15 C 0.315 3.685 16 O -0.301 6.301 17 N -0.363 5.363 18 C 0.395 3.605 19 O -0.414 6.414 20 N -0.406 5.406 21 C 0.065 3.935 22 H 0.103 0.897 23 C -0.168 4.168 24 C -0.155 4.155 25 C -0.157 4.157 26 C -0.149 4.149 27 C -0.116 4.116 28 H 0.090 0.910 29 C -0.204 4.204 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.118 0.882 39 H 0.055 0.945 40 H 0.221 0.779 41 H 0.222 0.778 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.071 0.929 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.807 -13.742 4.028 16.309 hybrid contribution 0.805 -0.176 -0.777 1.133 sum -7.002 -13.918 3.251 15.915 Atomic orbital electron populations 1.22305 0.82906 1.00887 0.97873 1.87861 1.18099 1.27670 1.94897 1.23264 0.97330 0.84939 0.97750 1.20998 0.90093 0.97556 0.89146 1.44020 1.72976 1.00696 1.11078 1.19317 1.36805 0.92036 0.89464 0.90406 1.24691 1.00586 0.97899 0.96639 1.69924 1.42255 1.20870 1.21231 0.86189 0.80889 0.78671 0.80864 1.20487 1.21701 1.22174 1.20642 0.93805 0.84374 0.96833 1.22113 0.91074 0.78563 0.76739 1.90553 1.45137 1.50965 1.43451 1.44882 1.14356 1.11800 1.65215 1.16408 0.83593 0.82112 0.78340 1.90970 1.44291 1.51988 1.54165 1.45447 1.16784 1.06435 1.71938 1.20726 0.82785 0.95167 0.94826 0.89689 1.21947 0.94917 1.01792 0.98182 1.21497 0.97057 0.96942 1.00027 1.21562 0.99040 0.97565 0.97578 1.21549 0.94291 1.01239 0.97835 1.21380 0.96152 0.96501 0.97530 0.90958 1.21815 0.99305 1.01361 0.97932 0.96722 0.94433 0.91583 0.93332 0.96458 0.91523 0.93804 0.93770 0.88161 0.94511 0.77944 0.77815 0.92189 0.91244 0.91765 0.92026 0.92098 0.92068 0.91648 0.91743 0.92232 0.92853 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.15 10.31 101.05 1.04 2.20 16 2 O -0.37 -8.18 6.59 -59.60 -0.39 -8.57 16 3 C 0.05 0.98 5.68 37.15 0.21 1.20 16 4 C 0.15 3.10 6.16 -4.05 -0.02 3.08 16 5 N -0.57 -13.94 2.12 -174.62 -0.37 -14.31 16 6 C -0.25 -6.66 9.70 -15.06 -0.15 -6.80 16 7 H 0.08 2.06 7.87 -52.49 -0.41 1.65 16 8 C 0.00 -0.02 4.93 -17.43 -0.09 -0.11 16 9 N -0.90 -25.23 8.92 55.49 0.50 -24.74 16 10 Si 0.90 21.74 29.62 -169.99 -5.03 16.70 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 C 0.17 4.00 5.28 -5.19 -0.03 3.97 16 15 C 0.53 12.66 4.56 -10.99 -0.05 12.61 16 16 O -0.44 -12.29 10.71 -26.87 -0.29 -12.58 16 17 N -0.70 -13.57 5.24 -15.78 -0.08 -13.65 16 18 C 0.69 13.76 8.47 -86.91 -0.74 13.02 16 19 O -0.54 -13.50 14.41 -18.47 -0.27 -13.76 16 20 N -0.75 -10.56 4.39 -58.69 -0.26 -10.82 16 21 C 0.17 2.20 1.90 -67.93 -0.13 2.08 16 22 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 23 C -0.13 -1.56 5.49 -26.73 -0.15 -1.71 16 24 C -0.12 -1.17 5.92 -26.74 -0.16 -1.33 16 25 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 26 C -0.11 -0.96 5.20 -26.76 -0.14 -1.10 16 27 C -0.10 -0.94 2.29 -90.65 -0.21 -1.15 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 C -0.15 -1.50 9.04 37.16 0.34 -1.16 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 1.28 7.94 -51.93 -0.41 0.87 16 36 H 0.04 0.82 7.98 -51.93 -0.41 0.41 16 37 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.10 2.42 6.26 -51.93 -0.33 2.10 16 39 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 40 H 0.39 5.85 8.71 -40.82 -0.36 5.50 16 41 H 0.39 4.25 8.40 -40.82 -0.34 3.91 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.64 7.44 -51.93 -0.39 0.26 16 51 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 52 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 402.87 15.07 6.07 6.07 Total: -1.00 -35.27 402.87 -9.90 -45.17 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -9.36 Total: 6.85 kcal Atomic # 6 Polarization: 24.05 SS G_CDS: -0.42 Total: 23.63 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.21 Total: -63.51 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.95 Total: -34.91 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.27 -9.90 -45.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459545368.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.264 kcal (2) G-P(sol) polarization free energy of solvation -35.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds