Wall clock time and date at job start Wed Apr 1 2020 00:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 114.00012 * 2 1 4 4 C 1.52991 * 109.47073 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47288 * 64.99550 * 4 3 2 6 6 C 1.36938 * 119.99708 * 96.01146 * 5 4 3 7 7 H 1.07997 * 120.00454 * 8.46191 * 6 5 4 8 8 C 1.38820 * 120.00050 * 188.45645 * 6 5 4 9 9 N 1.31619 * 119.99301 * 23.95518 * 8 6 5 10 10 Si 1.86796 * 120.00105 * 203.95515 * 8 6 5 11 11 H 1.48491 * 109.47293 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47093 * 120.00270 * 10 8 6 13 13 H 1.48501 * 109.47272 * 239.99885 * 10 8 6 14 14 C 1.46501 * 120.00455 * 276.01028 * 5 4 3 15 15 C 1.50697 * 109.46901 * 89.99891 * 14 5 4 16 16 O 1.21242 * 120.00050 * 0.02562 * 15 14 5 17 17 N 1.34780 * 119.99976 * 180.02562 * 15 14 5 18 18 C 1.34778 * 119.99850 * 180.02562 * 17 15 14 19 19 O 1.21532 * 120.00199 * 359.97438 * 18 17 15 20 20 N 1.34780 * 119.99850 * 179.97438 * 18 17 15 21 21 C 1.46497 * 120.00059 * 179.97438 * 20 18 17 22 22 H 1.09003 * 109.46976 * 34.99590 * 21 20 18 23 23 C 1.53001 * 109.47282 * 275.00157 * 21 20 18 24 24 C 1.52997 * 109.47178 * 180.02562 * 23 21 20 25 25 C 1.52995 * 109.47407 * 59.99450 * 24 23 21 26 26 C 1.53001 * 109.47400 * 300.00413 * 25 24 23 27 27 C 1.52995 * 109.47231 * 154.99652 * 21 20 18 28 28 H 1.09003 * 109.46701 * 60.00270 * 27 21 20 29 29 C 1.53001 * 109.47400 * 300.00433 * 27 21 20 30 30 H 1.08998 * 109.47204 * 300.00425 * 1 2 3 31 31 H 1.08995 * 109.46710 * 60.00124 * 1 2 3 32 32 H 1.08999 * 109.46757 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46671 * 299.99978 * 3 2 1 34 34 H 1.08998 * 109.47079 * 59.99598 * 3 2 1 35 35 H 1.08998 * 109.47445 * 184.99646 * 4 3 2 36 36 H 1.08998 * 109.47206 * 304.99791 * 4 3 2 37 37 H 0.97001 * 119.99711 * 179.97438 * 9 8 6 38 38 H 1.08994 * 109.47552 * 209.99854 * 14 5 4 39 39 H 1.09000 * 109.46998 * 330.00309 * 14 5 4 40 40 H 0.96994 * 119.99853 * 359.97438 * 17 15 14 41 41 H 0.96994 * 119.99853 * 359.97438 * 20 18 17 42 42 H 1.09003 * 109.47061 * 299.99982 * 23 21 20 43 43 H 1.09002 * 109.47140 * 59.99953 * 23 21 20 44 44 H 1.09003 * 109.46903 * 299.99325 * 24 23 21 45 45 H 1.09004 * 109.47156 * 180.02562 * 24 23 21 46 46 H 1.08998 * 109.47360 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.46701 * 60.00250 * 25 24 23 48 48 H 1.09003 * 109.46652 * 299.99967 * 26 25 24 49 49 H 1.09002 * 109.47140 * 179.97438 * 26 25 24 50 50 H 1.08994 * 109.47263 * 59.99693 * 29 27 21 51 51 H 1.09002 * 109.47140 * 179.97438 * 29 27 21 52 52 H 1.09003 * 109.46652 * 299.99967 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.3856 1.3475 -2.2968 7 1 4.5138 2.4107 -2.1572 8 6 4.6356 0.7751 -3.5365 9 7 4.0618 -0.3634 -3.8633 10 14 5.7863 1.6208 -4.7407 11 1 6.2985 2.8770 -4.1370 12 1 6.9260 0.7208 -5.0515 13 1 5.0496 1.9363 -5.9910 14 6 3.9805 -0.8951 -1.3833 15 6 2.6490 -1.3543 -1.9191 16 8 1.7826 -0.5430 -2.1662 17 7 2.4212 -2.6669 -2.1234 18 6 1.2304 -3.0775 -2.6031 19 8 0.3619 -2.2642 -2.8508 20 7 1.0028 -4.3900 -2.8079 21 6 -0.2917 -4.8364 -3.3287 22 1 -0.6739 -4.0980 -4.0336 23 6 -1.2796 -4.9958 -2.1714 24 6 -2.6313 -5.4626 -2.7152 25 6 -2.4584 -6.8059 -3.4268 26 6 -1.4705 -6.6465 -4.5842 27 6 -0.1192 -6.1796 -4.0407 28 1 0.2630 -6.9179 -3.3359 29 6 0.8687 -6.0202 -5.1981 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8464 0.8899 35 1 3.9785 2.1765 0.0901 36 1 3.8508 0.5686 0.8427 37 1 4.2361 -0.7632 -4.7298 38 1 4.7716 -1.1955 -2.0703 39 1 4.1553 -1.3481 -0.4074 40 1 3.1144 -3.3159 -1.9261 41 1 1.6960 -5.0390 -2.6105 42 1 -0.8974 -5.7342 -1.4665 43 1 -1.4025 -4.0388 -1.6642 44 1 -3.0138 -4.7245 -3.4202 45 1 -3.3353 -5.5757 -1.8907 46 1 -3.4215 -7.1387 -3.8139 47 1 -2.0760 -7.5439 -2.7217 48 1 -1.8529 -5.9084 -5.2893 49 1 -1.3470 -7.6037 -5.0909 50 1 1.8318 -5.6881 -4.8106 51 1 0.9919 -6.9773 -5.7051 52 1 0.4864 -5.2818 -5.9029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459545368.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:33 Heat of formation + Delta-G solvation = -112.161979 kcal Electronic energy + Delta-G solvation = -32724.698876 eV Core-core repulsion = 28531.446998 eV Total energy + Delta-G solvation = -4193.251878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.66545 -40.07569 -38.98360 -38.04439 -36.66679 -35.26140 -34.53357 -33.43098 -33.35845 -30.68976 -30.24423 -28.69482 -27.16485 -27.07921 -25.27612 -24.07722 -22.70844 -22.15893 -21.82283 -21.18885 -20.72258 -19.50258 -18.55552 -17.66999 -17.26275 -17.04842 -16.67292 -16.35826 -16.30320 -15.79887 -15.65629 -15.49233 -15.31679 -15.23696 -14.97040 -14.77210 -14.49282 -14.10186 -13.96924 -13.77995 -13.34535 -13.33621 -13.17969 -12.85518 -12.82929 -12.72589 -12.48110 -12.46223 -12.20168 -12.13927 -11.89672 -11.82279 -11.80759 -11.73722 -11.56778 -11.40644 -11.26186 -11.09007 -10.60151 -10.49096 -10.21778 -9.88678 -9.81286 -8.82705 -7.84633 -5.10552 1.47586 1.51377 1.60419 1.83979 1.94055 2.55858 3.05846 3.16691 3.30641 3.42420 3.64628 3.70522 3.80363 3.97281 4.17999 4.26266 4.36980 4.44375 4.47440 4.49616 4.55890 4.57564 4.57821 4.60731 4.65914 4.74075 4.77901 4.84727 4.85771 4.94970 5.00007 5.00532 5.08325 5.13010 5.17704 5.27509 5.27893 5.29239 5.34819 5.36947 5.42120 5.53841 5.69055 5.69638 5.78376 6.17037 6.31721 6.53745 7.04467 7.17976 7.80247 7.87960 8.19913 8.31180 9.22454 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.003582 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.927346 B = 7815.497827 C = 9331.001359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 O -0.382 6.382 3 C 0.053 3.947 4 C 0.145 3.855 5 N -0.584 5.584 6 C -0.253 4.253 7 H 0.076 0.924 8 C -0.050 4.050 9 N -0.917 5.917 10 Si 0.963 3.037 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.312 1.312 14 C 0.176 3.824 15 C 0.532 3.468 16 O -0.485 6.485 17 N -0.688 5.688 18 C 0.692 3.308 19 O -0.597 6.597 20 N -0.724 5.724 21 C 0.169 3.831 22 H 0.044 0.956 23 C -0.123 4.123 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.111 4.111 27 C -0.086 4.086 28 H 0.098 0.902 29 C -0.147 4.147 30 H 0.051 0.949 31 H 0.004 0.996 32 H 0.063 0.937 33 H 0.005 0.995 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.242 0.758 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.411 0.589 41 H 0.409 0.591 42 H 0.081 0.919 43 H 0.030 0.970 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.050 0.950 49 H 0.088 0.912 50 H 0.051 0.949 51 H 0.077 0.923 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 -17.439 5.995 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 O -0.300 6.300 3 C -0.026 4.026 4 C 0.019 3.981 5 N -0.303 5.303 6 C -0.383 4.383 7 H 0.094 0.906 8 C -0.245 4.245 9 N -0.565 5.565 10 Si 0.793 3.207 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.241 1.241 14 C 0.045 3.955 15 C 0.318 3.682 16 O -0.352 6.352 17 N -0.355 5.355 18 C 0.392 3.608 19 O -0.474 6.474 20 N -0.381 5.381 21 C 0.063 3.937 22 H 0.062 0.938 23 C -0.162 4.162 24 C -0.154 4.154 25 C -0.151 4.151 26 C -0.149 4.149 27 C -0.105 4.105 28 H 0.117 0.883 29 C -0.204 4.204 30 H 0.070 0.930 31 H 0.023 0.977 32 H 0.081 0.919 33 H 0.023 0.977 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.246 0.754 41 H 0.246 0.754 42 H 0.099 0.901 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.069 0.931 49 H 0.106 0.894 50 H 0.070 0.930 51 H 0.096 0.904 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.129 -16.313 5.511 18.636 hybrid contribution 0.556 0.588 -1.183 1.433 sum -6.574 -15.725 4.329 17.585 Atomic orbital electron populations 1.22237 0.82158 1.00758 0.97936 1.87817 1.18987 1.28303 1.94931 1.23171 0.97609 0.84500 0.97296 1.21228 0.89721 0.98725 0.88429 1.44241 1.73243 1.01295 1.11501 1.19572 1.36121 0.92324 0.90260 0.90602 1.25335 1.01990 0.98923 0.98232 1.70093 1.43319 1.22108 1.20931 0.85271 0.79030 0.78258 0.78133 1.19371 1.21095 1.24102 1.20650 0.92714 0.84052 0.98081 1.22259 0.90830 0.79340 0.75811 1.90544 1.46567 1.52622 1.45452 1.44499 1.15057 1.11327 1.64635 1.16577 0.82899 0.83348 0.77934 1.90940 1.45942 1.54054 1.56424 1.45213 1.17926 1.04718 1.70287 1.20868 0.82061 0.95997 0.94740 0.93800 1.21872 0.96046 1.00457 0.97840 1.21502 0.95843 0.97846 1.00239 1.21539 0.99792 0.96334 0.97427 1.21575 0.93466 1.01886 0.97928 1.21358 0.97075 0.94606 0.97447 0.88331 1.21822 0.98787 1.01963 0.97824 0.93042 0.97706 0.91885 0.97699 0.92790 0.90134 0.91041 0.94824 0.89583 0.91119 0.75357 0.75431 0.90070 0.95079 0.93545 0.90858 0.90659 0.90366 0.93112 0.89372 0.93016 0.90422 0.94757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.69 10.31 113.37 1.17 3.86 16 2 O -0.38 -16.97 6.59 -125.68 -0.83 -17.80 16 3 C 0.05 2.23 5.68 71.98 0.41 2.64 16 4 C 0.14 5.82 6.16 86.38 0.53 6.35 16 5 N -0.58 -28.43 2.12 -706.37 -1.49 -29.92 16 6 C -0.25 -13.70 9.70 84.04 0.82 -12.89 16 7 H 0.08 4.04 7.87 -2.91 -0.02 4.02 16 8 C -0.05 -2.76 4.93 84.86 0.42 -2.34 16 9 N -0.92 -52.81 8.92 21.65 0.19 -52.62 16 10 Si 0.96 45.46 29.62 68.60 2.03 47.49 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 13 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 14 C 0.18 7.98 5.28 85.63 0.45 8.43 16 15 C 0.53 25.80 4.56 87.66 0.40 26.20 16 16 O -0.49 -28.25 10.71 28.12 0.30 -27.95 16 17 N -0.69 -27.04 5.24 -440.52 -2.31 -29.35 16 18 C 0.69 28.20 8.47 179.05 1.52 29.72 16 19 O -0.60 -31.52 14.41 18.94 0.27 -31.24 16 20 N -0.72 -20.32 4.39 -457.87 -2.01 -22.33 16 21 C 0.17 4.39 1.90 44.99 0.09 4.47 16 22 H 0.04 1.52 7.58 -2.39 -0.02 1.51 16 23 C -0.12 -2.95 5.49 30.59 0.17 -2.78 16 24 C -0.12 -2.24 5.92 30.59 0.18 -2.06 16 25 C -0.11 -1.56 5.92 30.59 0.18 -1.38 16 26 C -0.11 -1.66 5.20 30.58 0.16 -1.50 16 27 C -0.09 -1.50 2.29 -10.81 -0.02 -1.53 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 C -0.15 -2.80 9.04 71.98 0.65 -2.15 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 2.97 7.94 -2.39 -0.02 2.95 16 36 H 0.07 2.48 7.98 -2.39 -0.02 2.46 16 37 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 38 H 0.09 4.16 6.26 -2.39 -0.01 4.15 16 39 H 0.07 2.68 7.95 -2.39 -0.02 2.66 16 40 H 0.41 12.03 8.71 -92.71 -0.81 11.22 16 41 H 0.41 8.24 8.40 -92.71 -0.78 7.47 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 46 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.05 1.05 7.44 -2.39 -0.02 1.03 16 51 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -81.33 402.87 2.59 -78.73 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -0.68 Total: 29.94 kcal Atomic # 6 Polarization: 47.93 SS G_CDS: 7.11 Total: 55.04 kcal Atomic # 7 Polarization: -128.60 SS G_CDS: -5.62 Total: -134.22 kcal Atomic # 8 Polarization: -76.74 SS G_CDS: -0.25 Total: -76.99 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -81.33 2.59 -78.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459545368.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.427 kcal (2) G-P(sol) polarization free energy of solvation -81.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds