Wall clock time and date at job start Wed Apr 1 2020 00:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99982 * 2 1 4 4 C 1.53004 * 109.46883 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47486 * 64.99935 * 4 3 2 6 6 C 1.36932 * 120.00089 * 264.45852 * 5 4 3 7 7 H 1.08007 * 119.99734 * 11.22944 * 6 5 4 8 8 C 1.38809 * 120.00022 * 191.23132 * 6 5 4 9 9 N 1.31615 * 120.00320 * 25.45984 * 8 6 5 10 10 Si 1.86809 * 119.99973 * 205.45706 * 8 6 5 11 11 H 1.48493 * 109.46930 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46826 * 120.00109 * 10 8 6 13 13 H 1.48496 * 109.47192 * 240.00072 * 10 8 6 14 14 C 1.46505 * 120.00064 * 84.45058 * 5 4 3 15 15 C 1.50702 * 109.46517 * 90.00128 * 14 5 4 16 16 O 1.21233 * 120.00127 * 0.02562 * 15 14 5 17 17 N 1.34774 * 119.99851 * 179.97438 * 15 14 5 18 18 C 1.34779 * 120.00152 * 180.02562 * 17 15 14 19 19 O 1.21530 * 119.99717 * 359.97438 * 18 17 15 20 20 N 1.34782 * 119.99942 * 180.02562 * 18 17 15 21 21 C 1.46497 * 119.99658 * 179.97438 * 20 18 17 22 22 H 1.09000 * 109.47113 * 324.99368 * 21 20 18 23 23 C 1.52997 * 109.47342 * 85.00086 * 21 20 18 24 24 C 1.53002 * 109.47198 * 59.99593 * 23 21 20 25 25 C 1.53004 * 109.46954 * 60.00020 * 24 23 21 26 26 C 1.52997 * 109.47152 * 300.00008 * 25 24 23 27 27 C 1.53002 * 109.47198 * 60.00141 * 26 25 24 28 28 H 1.09003 * 109.47240 * 59.99591 * 27 26 25 29 29 C 1.52997 * 109.47198 * 179.97438 * 27 26 25 30 30 H 1.08996 * 109.47514 * 299.99780 * 1 2 3 31 31 H 1.09000 * 109.47188 * 60.00860 * 1 2 3 32 32 H 1.09007 * 109.46908 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47108 * 59.99548 * 3 2 1 34 34 H 1.08996 * 109.46508 * 299.99758 * 3 2 1 35 35 H 1.08994 * 109.47448 * 304.99477 * 4 3 2 36 36 H 1.09003 * 109.46521 * 184.99451 * 4 3 2 37 37 H 0.97001 * 120.00441 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.47428 * 210.00026 * 14 5 4 39 39 H 1.09002 * 109.47004 * 330.00834 * 14 5 4 40 40 H 0.97004 * 119.99951 * 0.02562 * 17 15 14 41 41 H 0.96996 * 119.99906 * 359.97438 * 20 18 17 42 42 H 1.08994 * 109.47561 * 179.97438 * 23 21 20 43 43 H 1.08999 * 109.47095 * 300.00132 * 23 21 20 44 44 H 1.09000 * 109.47417 * 180.02562 * 24 23 21 45 45 H 1.09003 * 109.47240 * 300.00409 * 24 23 21 46 46 H 1.09003 * 109.46829 * 60.00138 * 25 24 23 47 47 H 1.09000 * 109.47208 * 180.02562 * 25 24 23 48 48 H 1.08999 * 109.47095 * 179.97438 * 26 25 24 49 49 H 1.08994 * 109.47561 * 299.99897 * 26 25 24 50 50 H 1.08995 * 109.47217 * 180.02562 * 29 27 26 51 51 H 1.09008 * 109.47174 * 299.99649 * 29 27 26 52 52 H 1.08994 * 109.47561 * 59.99756 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9768 0.5639 -1.2508 6 6 4.2072 -0.7849 -1.3021 7 1 3.8944 -1.4176 -0.4845 8 6 4.8427 -1.3390 -2.4047 9 7 5.6504 -0.6025 -3.1378 10 14 4.5518 -3.1303 -2.8481 11 1 3.6081 -3.7343 -1.8736 12 1 3.9740 -3.2146 -4.2135 13 1 5.8414 -3.8654 -2.8100 14 6 4.1714 1.3863 -2.4476 15 6 5.5927 1.8857 -2.4881 16 8 6.3665 1.5841 -1.6049 17 7 6.0037 2.6667 -3.5066 18 6 7.2750 3.1129 -3.5432 19 8 8.0505 2.8114 -2.6574 20 7 7.6859 3.8944 -4.5615 21 6 9.0675 4.3799 -4.6009 22 1 9.4123 4.5772 -3.5858 23 6 9.9623 3.3201 -5.2466 24 6 9.4782 3.0431 -6.6713 25 6 9.5422 4.3332 -7.4915 26 6 8.6475 5.3930 -6.8458 27 6 9.1315 5.6699 -5.4210 28 1 10.1596 6.0311 -5.4503 29 6 8.2372 6.7302 -4.7755 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8508 0.5686 0.8427 36 1 3.9784 2.1766 0.0901 37 1 6.0943 -0.9896 -3.9086 38 1 3.9711 0.7878 -3.3362 39 1 3.4886 2.2355 -2.4199 40 1 5.3846 2.9077 -4.2134 41 1 7.0668 4.1354 -5.2682 42 1 10.9902 3.6814 -5.2763 43 1 9.9166 2.4010 -4.6623 44 1 10.1154 2.2877 -7.1312 45 1 8.4502 2.6819 -6.6420 46 1 10.5703 4.6944 -7.5208 47 1 9.1969 4.1360 -8.5064 48 1 8.6934 6.3122 -7.4298 49 1 7.6195 5.0318 -6.8165 50 1 8.5823 6.9278 -3.7607 51 1 8.2832 7.6492 -5.3600 52 1 7.2090 6.3695 -4.7462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459545369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:37 Heat of formation + Delta-G solvation = -115.228172 kcal Electronic energy + Delta-G solvation = -31774.650170 eV Core-core repulsion = 27581.265332 eV Total energy + Delta-G solvation = -4193.384838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.88662 -40.29088 -38.98048 -38.32842 -36.67810 -35.26747 -34.32003 -33.47243 -33.39350 -30.91918 -30.43893 -28.74039 -27.14889 -27.06863 -25.25706 -24.07698 -23.11899 -22.34932 -22.01065 -21.10892 -20.12101 -19.74503 -18.59297 -17.66997 -17.30273 -17.06343 -16.70243 -16.40413 -16.25641 -16.06375 -15.79618 -15.71655 -15.40587 -15.27190 -14.88598 -14.77099 -14.45616 -14.30515 -14.14437 -13.71644 -13.51760 -13.26283 -13.12768 -12.84429 -12.81780 -12.67830 -12.60344 -12.53593 -12.38004 -12.17840 -11.99561 -11.91843 -11.79119 -11.70388 -11.61806 -11.38717 -11.21820 -10.91217 -10.69819 -10.63195 -10.34748 -10.14505 -9.90903 -8.83459 -7.85378 -5.10126 1.45002 1.49387 1.60267 1.73189 1.73781 2.56126 2.82325 3.14662 3.29425 3.33795 3.65477 3.68879 3.83754 3.86024 4.18954 4.24529 4.33870 4.46532 4.47866 4.49807 4.53900 4.57282 4.58842 4.67553 4.69197 4.69377 4.72417 4.79990 4.86154 4.90885 4.94668 4.99733 5.08780 5.13856 5.16602 5.19116 5.27075 5.30598 5.32346 5.41254 5.46177 5.53613 5.63575 5.67827 5.75527 6.01542 6.29051 6.58176 6.95164 7.16822 7.70415 7.80697 7.96157 8.26510 9.22139 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.003026 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.648682 B = 9249.555906 C =10442.762084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.056 3.944 4 C 0.143 3.857 5 N -0.579 5.579 6 C -0.230 4.230 7 H 0.065 0.935 8 C -0.053 4.053 9 N -0.918 5.918 10 Si 0.958 3.042 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.310 1.310 14 C 0.172 3.828 15 C 0.526 3.474 16 O -0.521 6.521 17 N -0.683 5.683 18 C 0.690 3.310 19 O -0.601 6.601 20 N -0.712 5.712 21 C 0.166 3.834 22 H 0.055 0.945 23 C -0.131 4.131 24 C -0.115 4.115 25 C -0.112 4.112 26 C -0.111 4.111 27 C -0.087 4.087 28 H 0.096 0.904 29 C -0.145 4.145 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.242 0.758 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.417 0.583 41 H 0.408 0.592 42 H 0.084 0.916 43 H 0.022 0.978 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.088 0.912 49 H 0.064 0.936 50 H 0.042 0.958 51 H 0.077 0.923 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.539 17.651 -11.015 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.022 4.022 4 C 0.017 3.983 5 N -0.298 5.298 6 C -0.360 4.360 7 H 0.083 0.917 8 C -0.247 4.247 9 N -0.566 5.566 10 Si 0.788 3.212 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.239 1.239 14 C 0.040 3.960 15 C 0.312 3.688 16 O -0.391 6.391 17 N -0.350 5.350 18 C 0.391 3.609 19 O -0.477 6.477 20 N -0.371 5.371 21 C 0.061 3.939 22 H 0.074 0.926 23 C -0.170 4.170 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.149 4.149 27 C -0.106 4.106 28 H 0.115 0.885 29 C -0.203 4.203 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.254 0.746 41 H 0.247 0.753 42 H 0.103 0.897 43 H 0.041 0.959 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.106 0.894 49 H 0.082 0.918 50 H 0.061 0.939 51 H 0.096 0.904 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.233 16.926 -9.717 19.556 hybrid contribution -0.235 -1.215 -0.581 1.367 sum -1.468 15.712 -10.297 18.843 Atomic orbital electron populations 1.22825 0.80833 1.02841 1.00350 1.88049 1.20307 1.28802 1.95349 1.23164 0.94674 0.84365 1.00029 1.20988 0.92218 0.96834 0.88305 1.44043 1.75197 1.04186 1.06362 1.19351 1.30180 0.83299 1.03186 0.91695 1.25257 0.97912 1.00919 1.00615 1.70031 1.29604 1.36670 1.20301 0.85333 0.76355 0.81542 0.77922 1.19954 1.20929 1.23891 1.20708 0.88642 0.94328 0.92282 1.22862 0.93187 0.73578 0.79126 1.90603 1.56600 1.52445 1.39450 1.44396 1.11531 1.50728 1.28339 1.16620 0.82475 0.79055 0.82783 1.90964 1.54668 1.61493 1.40621 1.45187 1.13839 1.53123 1.24993 1.20876 0.79957 0.93951 0.99117 0.92633 1.21904 1.00062 0.98126 0.96874 1.21464 1.00832 0.98754 0.94230 1.21521 1.00868 0.93918 0.98678 1.21613 0.99284 0.99743 0.94248 1.21386 1.01886 0.92291 0.95015 0.88543 1.21808 0.99535 0.98674 1.00241 0.93058 0.93727 0.89902 0.91771 0.92971 0.94244 0.92151 0.94877 0.89374 0.89352 0.74649 0.75346 0.89730 0.95922 0.92401 0.93170 0.91009 0.90795 0.89369 0.91787 0.93897 0.90448 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -15.15 10.44 -148.98 -1.56 -16.70 16 3 C 0.06 1.85 6.28 71.98 0.45 2.31 16 4 C 0.14 5.96 6.07 86.38 0.52 6.48 16 5 N -0.58 -28.71 1.97 -706.33 -1.39 -30.11 16 6 C -0.23 -13.03 9.43 84.03 0.79 -12.23 16 7 H 0.07 3.81 7.95 -2.91 -0.02 3.78 16 8 C -0.05 -3.02 4.84 84.86 0.41 -2.60 16 9 N -0.92 -53.95 8.90 21.65 0.19 -53.76 16 10 Si 0.96 47.24 29.62 68.60 2.03 49.28 16 11 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 13 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 14 C 0.17 7.52 5.45 85.63 0.47 7.99 16 15 C 0.53 25.42 5.76 87.66 0.50 25.92 16 16 O -0.52 -32.05 14.35 19.88 0.29 -31.77 16 17 N -0.68 -25.76 5.24 -440.53 -2.31 -28.07 16 18 C 0.69 27.64 8.47 179.05 1.52 29.15 16 19 O -0.60 -32.09 14.41 18.95 0.27 -31.81 16 20 N -0.71 -19.17 3.54 -457.87 -1.62 -20.79 16 21 C 0.17 4.15 2.23 44.99 0.10 4.25 16 22 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16 23 C -0.13 -3.40 5.60 30.59 0.17 -3.23 16 24 C -0.12 -2.41 5.77 30.60 0.18 -2.24 16 25 C -0.11 -1.53 5.92 30.59 0.18 -1.35 16 26 C -0.11 -1.31 5.03 30.59 0.15 -1.16 16 27 C -0.09 -1.33 2.51 -10.79 -0.03 -1.36 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 C -0.15 -2.11 9.04 71.98 0.65 -1.46 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 35 H 0.04 1.78 7.99 -2.39 -0.02 1.77 16 36 H 0.06 2.38 8.11 -2.39 -0.02 2.36 16 37 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.09 4.12 6.52 -2.39 -0.02 4.11 16 39 H 0.09 2.97 8.05 -2.39 -0.02 2.96 16 40 H 0.42 11.08 8.71 -92.71 -0.81 10.28 16 41 H 0.41 7.92 6.67 -92.71 -0.62 7.31 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.05 1.18 7.60 -2.39 -0.02 1.16 16 46 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.06 0.74 6.51 -2.39 -0.02 0.72 16 50 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 52 H 0.05 0.82 7.45 -2.39 -0.02 0.80 16 Total: -1.00 -87.74 408.63 2.71 -85.03 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.51 Total: 26.25 kcal Atomic # 6 Polarization: 45.13 SS G_CDS: 7.32 Total: 52.45 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -5.13 Total: -132.72 kcal Atomic # 8 Polarization: -79.29 SS G_CDS: -1.00 Total: -80.28 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.28 kcal Total: -87.74 2.71 -85.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459545369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.200 kcal (2) G-P(sol) polarization free energy of solvation -87.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds