Wall clock time and date at job start Wed Apr 1 2020 00:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00046 * 2 1 4 4 C 1.52998 * 109.47581 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46983 * 64.99957 * 4 3 2 6 6 C 1.36937 * 120.00009 * 90.00183 * 5 4 3 7 7 H 1.08000 * 120.00034 * 359.25666 * 6 5 4 8 8 C 1.38813 * 119.99709 * 179.25512 * 6 5 4 9 9 N 1.31612 * 120.00410 * 27.98276 * 8 6 5 10 10 Si 1.86803 * 119.99701 * 207.98208 * 8 6 5 11 11 H 1.48500 * 109.47323 * 60.00135 * 10 8 6 12 12 H 1.48502 * 109.47236 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47385 * 300.00045 * 10 8 6 14 14 C 1.46502 * 120.00219 * 270.00178 * 5 4 3 15 15 C 1.50700 * 109.47095 * 96.60516 * 14 5 4 16 16 O 1.21227 * 120.00087 * 359.97438 * 15 14 5 17 17 N 1.34775 * 119.99963 * 180.02562 * 15 14 5 18 18 C 1.34777 * 120.00219 * 180.02562 * 17 15 14 19 19 O 1.21541 * 119.99949 * 359.97438 * 18 17 15 20 20 N 1.34775 * 120.00219 * 179.97438 * 18 17 15 21 21 C 1.46506 * 120.00023 * 179.97438 * 20 18 17 22 22 H 1.09000 * 109.46987 * 34.99398 * 21 20 18 23 23 C 1.53007 * 109.46868 * 274.99547 * 21 20 18 24 24 C 1.52994 * 109.47144 * 300.00169 * 23 21 20 25 25 C 1.53003 * 109.47271 * 299.99834 * 24 23 21 26 26 C 1.53007 * 109.46901 * 60.00017 * 25 24 23 27 27 C 1.52992 * 109.47288 * 300.00418 * 26 25 24 28 28 H 1.09007 * 109.47242 * 299.99835 * 27 26 25 29 29 C 1.53007 * 109.47288 * 179.97438 * 27 26 25 30 30 H 1.08996 * 109.47384 * 60.00337 * 1 2 3 31 31 H 1.09003 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46709 * 299.99612 * 1 2 3 33 33 H 1.09000 * 109.47182 * 60.00197 * 3 2 1 34 34 H 1.09001 * 109.46820 * 300.00376 * 3 2 1 35 35 H 1.08997 * 109.47102 * 305.00125 * 4 3 2 36 36 H 1.08998 * 109.47236 * 184.99754 * 4 3 2 37 37 H 0.97001 * 120.00356 * 179.97438 * 9 8 6 38 38 H 1.08997 * 109.47379 * 216.60958 * 14 5 4 39 39 H 1.09002 * 109.46845 * 336.60367 * 14 5 4 40 40 H 0.97002 * 119.99896 * 359.97438 * 17 15 14 41 41 H 0.97002 * 119.99896 * 359.97438 * 20 18 17 42 42 H 1.09006 * 109.46541 * 60.00090 * 23 21 20 43 43 H 1.08997 * 109.46863 * 179.97438 * 23 21 20 44 44 H 1.08997 * 109.47674 * 59.99966 * 24 23 21 45 45 H 1.08998 * 109.47299 * 180.02562 * 24 23 21 46 46 H 1.09002 * 109.47301 * 179.97438 * 25 24 23 47 47 H 1.08997 * 109.46880 * 300.00619 * 25 24 23 48 48 H 1.09007 * 109.46844 * 60.00496 * 26 25 24 49 49 H 1.08997 * 109.47109 * 180.02562 * 26 25 24 50 50 H 1.08996 * 109.46405 * 299.99906 * 29 27 26 51 51 H 1.08997 * 109.47109 * 59.99694 * 29 27 26 52 52 H 1.09002 * 109.46992 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2660 1.3462 -2.3390 7 1 4.1590 2.4191 -2.2763 8 6 4.6980 0.7596 -3.5206 9 7 4.3301 -0.4684 -3.8185 10 14 5.8014 1.7133 -4.6878 11 1 7.0591 2.0821 -3.9897 12 1 6.1190 0.8704 -5.8685 13 1 5.1029 2.9456 -5.1335 14 6 4.1052 -0.8919 -1.3428 15 6 2.8557 -1.4705 -1.9551 16 8 1.9466 -0.7388 -2.2832 17 7 2.7484 -2.8016 -2.1368 18 6 1.6311 -3.3191 -2.6848 19 8 0.7200 -2.5854 -3.0147 20 7 1.5240 -4.6502 -2.8671 21 6 0.3092 -5.2127 -3.4623 22 1 -0.0802 -4.5243 -4.2124 23 6 -0.7419 -5.4256 -2.3710 24 6 -0.1954 -6.3916 -1.3180 25 6 0.1335 -7.7324 -1.9777 26 6 1.1846 -7.5195 -3.0690 27 6 0.6382 -6.5534 -4.1219 28 1 -0.2657 -6.9718 -4.5648 29 6 1.6895 -6.3400 -5.2129 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8515 0.5683 0.8409 36 1 3.9784 2.1766 0.0889 37 1 4.6317 -0.8782 -4.6444 38 1 4.9644 -1.1425 -1.9651 39 1 4.2464 -1.3065 -0.3447 40 1 3.4756 -3.3872 -1.8739 41 1 2.2512 -5.2357 -2.6042 42 1 -0.9762 -4.4703 -1.9010 43 1 -1.6459 -5.8436 -2.8138 44 1 0.7084 -5.9732 -0.8752 45 1 -0.9443 -6.5436 -0.5408 46 1 0.5234 -8.4205 -1.2276 47 1 -0.7703 -8.1508 -2.4205 48 1 2.0885 -7.1010 -2.6262 49 1 1.4187 -8.4745 -3.5393 50 1 2.5930 -5.9213 -4.7697 51 1 1.9243 -7.2949 -5.6830 52 1 1.3000 -5.6520 -5.9633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459545370.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:42 Heat of formation + Delta-G solvation = -85.700953 kcal Electronic energy + Delta-G solvation = -32879.078994 eV Core-core repulsion = 28686.974552 eV Total energy + Delta-G solvation = -4192.104442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.31736 -38.85655 -37.31765 -36.41472 -34.79965 -33.46501 -32.89428 -32.41429 -31.50510 -29.75547 -28.73982 -26.88628 -26.21467 -25.43234 -23.51194 -22.76277 -21.73890 -21.41006 -20.37958 -19.22903 -18.95395 -18.19651 -16.72840 -15.85995 -15.53354 -15.39514 -15.27641 -15.06722 -14.88151 -14.48609 -14.36129 -14.05881 -13.99995 -13.66477 -13.49660 -13.36868 -13.17180 -12.83343 -12.39564 -12.28040 -12.15709 -11.97246 -11.72963 -11.57002 -11.50731 -11.45177 -11.10124 -10.97530 -10.93453 -10.67781 -10.63413 -10.41868 -10.33129 -10.12634 -10.04620 -10.00362 -9.79620 -9.68872 -8.76917 -8.66267 -8.49134 -8.44414 -7.94020 -6.93861 -5.81860 -3.00569 3.28803 3.43866 3.49829 3.51274 3.63490 4.51330 4.55484 4.61294 4.65755 4.75890 4.78107 4.92240 5.01362 5.12884 5.32280 5.37490 5.38214 5.40629 5.44982 5.53464 5.55502 5.72609 5.77697 5.84984 5.86005 5.95582 6.02008 6.06673 6.10943 6.15678 6.20116 6.20581 6.23435 6.26037 6.31178 6.36817 6.40616 6.42409 6.59087 6.62936 6.89295 6.94110 7.21228 7.24740 7.78199 7.87970 8.12401 8.24665 8.49924 9.16497 9.39088 9.80592 9.99753 10.28933 11.28836 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012764 B = 0.003826 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.184762 B = 7317.504685 C = 8841.972555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.366 6.366 3 C 0.043 3.957 4 C 0.151 3.849 5 N -0.570 5.570 6 C -0.247 4.247 7 H 0.079 0.921 8 C 0.003 3.997 9 N -0.895 5.895 10 Si 0.899 3.101 11 H -0.286 1.286 12 H -0.293 1.293 13 H -0.286 1.286 14 C 0.171 3.829 15 C 0.531 3.469 16 O -0.443 6.443 17 N -0.696 5.696 18 C 0.694 3.306 19 O -0.543 6.543 20 N -0.743 5.743 21 C 0.171 3.829 22 H 0.085 0.915 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.114 4.114 27 C -0.098 4.098 28 H 0.080 0.920 29 C -0.147 4.147 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.253 0.747 38 H 0.101 0.899 39 H 0.038 0.962 40 H 0.388 0.612 41 H 0.388 0.612 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.058 0.942 51 H 0.052 0.948 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 -15.324 5.861 16.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.024 3.976 5 N -0.289 5.289 6 C -0.375 4.375 7 H 0.096 0.904 8 C -0.194 4.194 9 N -0.541 5.541 10 Si 0.729 3.271 11 H -0.213 1.213 12 H -0.219 1.219 13 H -0.213 1.213 14 C 0.041 3.959 15 C 0.316 3.684 16 O -0.306 6.306 17 N -0.362 5.362 18 C 0.395 3.605 19 O -0.416 6.416 20 N -0.402 5.402 21 C 0.065 3.935 22 H 0.103 0.897 23 C -0.170 4.170 24 C -0.154 4.154 25 C -0.156 4.156 26 C -0.152 4.152 27 C -0.117 4.117 28 H 0.099 0.901 29 C -0.204 4.204 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.119 0.881 39 H 0.056 0.944 40 H 0.220 0.780 41 H 0.222 0.778 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.491 -14.270 5.201 16.150 hybrid contribution 0.800 -0.048 -0.717 1.075 sum -4.692 -14.318 4.484 15.720 Atomic orbital electron populations 1.22377 0.82974 1.01103 0.98045 1.87882 1.17968 1.27644 1.94926 1.23333 0.97627 0.84861 0.97829 1.20971 0.89973 0.97693 0.88988 1.44081 1.75312 1.00761 1.08705 1.19198 1.36899 0.90180 0.91236 0.90362 1.24622 1.01302 0.96588 0.96907 1.69917 1.44393 1.15321 1.24482 0.86376 0.81678 0.79166 0.79844 1.21265 1.21927 1.21292 1.20863 0.95046 0.83909 0.96122 1.22160 0.90203 0.78268 0.77808 1.90574 1.39559 1.56878 1.43555 1.44901 1.17678 1.11404 1.62249 1.16426 0.83712 0.81705 0.78655 1.90973 1.39122 1.58258 1.53214 1.45460 1.20140 1.05996 1.68642 1.20680 0.84636 0.93664 0.94556 0.89698 1.21939 0.97964 1.00012 0.97100 1.21476 1.01168 0.95005 0.97766 1.21549 0.98951 0.97341 0.97779 1.21595 0.98469 0.98966 0.96169 1.21416 0.99560 0.94902 0.95778 0.90144 1.21809 0.99134 1.01241 0.98222 0.94626 0.91320 0.96349 0.96185 0.93497 0.93421 0.91571 0.93614 0.88121 0.94399 0.77996 0.77760 0.91206 0.91638 0.91812 0.92424 0.92232 0.92132 0.92005 0.91903 0.92257 0.92879 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.02 10.84 101.05 1.10 2.11 16 2 O -0.37 -8.08 7.16 -57.79 -0.41 -8.50 16 3 C 0.04 0.89 6.04 37.16 0.22 1.11 16 4 C 0.15 3.09 6.11 -4.04 -0.02 3.07 16 5 N -0.57 -13.91 2.05 -174.61 -0.36 -14.27 16 6 C -0.25 -6.67 9.49 -15.06 -0.14 -6.81 16 7 H 0.08 2.09 7.97 -52.49 -0.42 1.67 16 8 C 0.00 0.08 4.98 -17.43 -0.09 0.00 16 9 N -0.90 -25.07 8.77 55.49 0.49 -24.59 16 10 Si 0.90 21.75 29.64 -169.99 -5.04 16.71 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.17 3.92 5.35 -5.19 -0.03 3.90 16 15 C 0.53 12.79 4.78 -10.99 -0.05 12.74 16 16 O -0.44 -12.67 11.83 -26.25 -0.31 -12.98 16 17 N -0.70 -13.67 5.24 -15.78 -0.08 -13.75 16 18 C 0.69 13.84 8.47 -86.92 -0.74 13.10 16 19 O -0.54 -13.72 14.41 -18.47 -0.27 -13.99 16 20 N -0.74 -10.47 3.54 -58.68 -0.21 -10.68 16 21 C 0.17 2.19 2.23 -67.92 -0.15 2.04 16 22 H 0.08 1.35 7.58 -51.93 -0.39 0.95 16 23 C -0.13 -1.58 5.60 -26.73 -0.15 -1.72 16 24 C -0.12 -1.16 5.77 -26.73 -0.15 -1.31 16 25 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 26 C -0.11 -0.93 5.03 -26.73 -0.13 -1.06 16 27 C -0.10 -0.94 2.51 -90.62 -0.23 -1.17 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 C -0.15 -1.50 9.04 37.16 0.34 -1.16 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.88 7.85 -51.93 -0.41 0.47 16 36 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 37 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.10 2.43 6.22 -51.93 -0.32 2.10 16 39 H 0.04 0.75 7.82 -51.93 -0.41 0.34 16 40 H 0.39 5.90 8.71 -40.82 -0.36 5.55 16 41 H 0.39 4.39 6.66 -40.82 -0.27 4.12 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.69 7.60 -51.93 -0.39 0.29 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.50 6.51 -51.93 -0.34 0.16 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.65 7.44 -51.93 -0.39 0.26 16 51 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 52 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -35.55 400.83 -9.71 -45.25 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -9.17 Total: 7.04 kcal Atomic # 6 Polarization: 24.10 SS G_CDS: -0.39 Total: 23.71 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.16 Total: -63.28 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.99 Total: -35.47 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.04 Total: 16.71 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.55 -9.71 -45.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459545370.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.446 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds