Wall clock time and date at job start Wed Apr 1 2020 00:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00046 * 2 1 4 4 C 1.52998 * 109.47581 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46983 * 64.99957 * 4 3 2 6 6 C 1.36937 * 120.00009 * 90.00183 * 5 4 3 7 7 H 1.08000 * 120.00034 * 359.25666 * 6 5 4 8 8 C 1.38813 * 119.99709 * 179.25512 * 6 5 4 9 9 N 1.31612 * 120.00410 * 27.98276 * 8 6 5 10 10 Si 1.86803 * 119.99701 * 207.98208 * 8 6 5 11 11 H 1.48500 * 109.47323 * 60.00135 * 10 8 6 12 12 H 1.48502 * 109.47236 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47385 * 300.00045 * 10 8 6 14 14 C 1.46502 * 120.00219 * 270.00178 * 5 4 3 15 15 C 1.50700 * 109.47095 * 96.60516 * 14 5 4 16 16 O 1.21227 * 120.00087 * 359.97438 * 15 14 5 17 17 N 1.34775 * 119.99963 * 180.02562 * 15 14 5 18 18 C 1.34777 * 120.00219 * 180.02562 * 17 15 14 19 19 O 1.21541 * 119.99949 * 359.97438 * 18 17 15 20 20 N 1.34775 * 120.00219 * 179.97438 * 18 17 15 21 21 C 1.46506 * 120.00023 * 179.97438 * 20 18 17 22 22 H 1.09000 * 109.46987 * 34.99398 * 21 20 18 23 23 C 1.53007 * 109.46868 * 274.99547 * 21 20 18 24 24 C 1.52994 * 109.47144 * 300.00169 * 23 21 20 25 25 C 1.53003 * 109.47271 * 299.99834 * 24 23 21 26 26 C 1.53007 * 109.46901 * 60.00017 * 25 24 23 27 27 C 1.52992 * 109.47288 * 300.00418 * 26 25 24 28 28 H 1.09007 * 109.47242 * 299.99835 * 27 26 25 29 29 C 1.53007 * 109.47288 * 179.97438 * 27 26 25 30 30 H 1.08996 * 109.47384 * 60.00337 * 1 2 3 31 31 H 1.09003 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46709 * 299.99612 * 1 2 3 33 33 H 1.09000 * 109.47182 * 60.00197 * 3 2 1 34 34 H 1.09001 * 109.46820 * 300.00376 * 3 2 1 35 35 H 1.08997 * 109.47102 * 305.00125 * 4 3 2 36 36 H 1.08998 * 109.47236 * 184.99754 * 4 3 2 37 37 H 0.97001 * 120.00356 * 179.97438 * 9 8 6 38 38 H 1.08997 * 109.47379 * 216.60958 * 14 5 4 39 39 H 1.09002 * 109.46845 * 336.60367 * 14 5 4 40 40 H 0.97002 * 119.99896 * 359.97438 * 17 15 14 41 41 H 0.97002 * 119.99896 * 359.97438 * 20 18 17 42 42 H 1.09006 * 109.46541 * 60.00090 * 23 21 20 43 43 H 1.08997 * 109.46863 * 179.97438 * 23 21 20 44 44 H 1.08997 * 109.47674 * 59.99966 * 24 23 21 45 45 H 1.08998 * 109.47299 * 180.02562 * 24 23 21 46 46 H 1.09002 * 109.47301 * 179.97438 * 25 24 23 47 47 H 1.08997 * 109.46880 * 300.00619 * 25 24 23 48 48 H 1.09007 * 109.46844 * 60.00496 * 26 25 24 49 49 H 1.08997 * 109.47109 * 180.02562 * 26 25 24 50 50 H 1.08996 * 109.46405 * 299.99906 * 29 27 26 51 51 H 1.08997 * 109.47109 * 59.99694 * 29 27 26 52 52 H 1.09002 * 109.46992 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2660 1.3462 -2.3390 7 1 4.1590 2.4191 -2.2763 8 6 4.6980 0.7596 -3.5206 9 7 4.3301 -0.4684 -3.8185 10 14 5.8014 1.7133 -4.6878 11 1 7.0591 2.0821 -3.9897 12 1 6.1190 0.8704 -5.8685 13 1 5.1029 2.9456 -5.1335 14 6 4.1052 -0.8919 -1.3428 15 6 2.8557 -1.4705 -1.9551 16 8 1.9466 -0.7388 -2.2832 17 7 2.7484 -2.8016 -2.1368 18 6 1.6311 -3.3191 -2.6848 19 8 0.7200 -2.5854 -3.0147 20 7 1.5240 -4.6502 -2.8671 21 6 0.3092 -5.2127 -3.4623 22 1 -0.0802 -4.5243 -4.2124 23 6 -0.7419 -5.4256 -2.3710 24 6 -0.1954 -6.3916 -1.3180 25 6 0.1335 -7.7324 -1.9777 26 6 1.1846 -7.5195 -3.0690 27 6 0.6382 -6.5534 -4.1219 28 1 -0.2657 -6.9718 -4.5648 29 6 1.6895 -6.3400 -5.2129 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8515 0.5683 0.8409 36 1 3.9784 2.1766 0.0889 37 1 4.6317 -0.8782 -4.6444 38 1 4.9644 -1.1425 -1.9651 39 1 4.2464 -1.3065 -0.3447 40 1 3.4756 -3.3872 -1.8739 41 1 2.2512 -5.2357 -2.6042 42 1 -0.9762 -4.4703 -1.9010 43 1 -1.6459 -5.8436 -2.8138 44 1 0.7084 -5.9732 -0.8752 45 1 -0.9443 -6.5436 -0.5408 46 1 0.5234 -8.4205 -1.2276 47 1 -0.7703 -8.1508 -2.4205 48 1 2.0885 -7.1010 -2.6262 49 1 1.4187 -8.4745 -3.5393 50 1 2.5930 -5.9213 -4.7697 51 1 1.9243 -7.2949 -5.6830 52 1 1.3000 -5.6520 -5.9633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459545370.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:41 Heat of formation + Delta-G solvation = -108.262733 kcal Electronic energy + Delta-G solvation = -32880.057346 eV Core-core repulsion = 28686.974552 eV Total energy + Delta-G solvation = -4193.082794 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.75585 -40.18535 -38.94916 -38.09718 -36.63080 -35.09057 -34.20376 -33.44838 -33.38408 -30.86517 -30.40419 -28.68675 -27.14674 -27.10384 -25.29993 -23.93538 -23.00857 -22.31514 -22.04233 -20.96415 -20.09146 -19.66609 -18.57123 -17.46136 -17.26334 -17.04426 -16.63688 -16.39636 -16.21070 -16.03246 -15.69790 -15.60655 -15.40642 -15.18433 -14.98271 -14.73131 -14.32560 -14.12629 -14.05070 -13.71591 -13.38869 -13.21033 -13.09013 -12.84396 -12.82595 -12.74766 -12.59017 -12.49465 -12.39128 -12.25372 -11.91399 -11.80725 -11.78918 -11.75854 -11.50065 -11.37008 -11.19604 -10.89521 -10.54199 -10.43107 -10.30906 -9.91009 -9.82361 -8.86861 -7.87167 -5.05633 1.49858 1.51449 1.58495 1.85984 1.93580 2.56549 3.04772 3.14108 3.27760 3.44502 3.68208 3.71872 3.84581 3.87174 4.20832 4.25778 4.36026 4.44343 4.49991 4.54749 4.57082 4.58861 4.59189 4.64283 4.69957 4.73034 4.74032 4.80540 4.85641 4.91322 4.96970 4.99377 5.09874 5.15510 5.20239 5.25054 5.31157 5.34477 5.39292 5.40108 5.47308 5.55297 5.71028 5.71683 5.77247 6.15752 6.30765 6.51494 7.03701 7.18095 7.80676 7.88766 8.17976 8.31398 9.20778 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012764 B = 0.003826 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.184762 B = 7317.504685 C = 8841.972555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.385 6.385 3 C 0.049 3.951 4 C 0.146 3.854 5 N -0.584 5.584 6 C -0.254 4.254 7 H 0.073 0.927 8 C -0.045 4.045 9 N -0.914 5.914 10 Si 0.959 3.041 11 H -0.273 1.273 12 H -0.300 1.300 13 H -0.294 1.294 14 C 0.173 3.827 15 C 0.533 3.467 16 O -0.494 6.494 17 N -0.688 5.688 18 C 0.692 3.308 19 O -0.600 6.600 20 N -0.716 5.716 21 C 0.167 3.833 22 H 0.047 0.953 23 C -0.127 4.127 24 C -0.113 4.113 25 C -0.113 4.113 26 C -0.111 4.111 27 C -0.087 4.087 28 H 0.096 0.904 29 C -0.146 4.146 30 H 0.007 0.993 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.006 0.994 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.244 0.756 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.411 0.589 41 H 0.406 0.594 42 H 0.030 0.970 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.049 0.951 51 H 0.076 0.924 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 -17.702 7.364 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.304 6.304 3 C -0.030 4.030 4 C 0.020 3.980 5 N -0.303 5.303 6 C -0.384 4.384 7 H 0.091 0.909 8 C -0.240 4.240 9 N -0.561 5.561 10 Si 0.788 3.212 11 H -0.199 1.199 12 H -0.227 1.227 13 H -0.221 1.221 14 C 0.042 3.958 15 C 0.319 3.681 16 O -0.361 6.361 17 N -0.355 5.355 18 C 0.392 3.608 19 O -0.477 6.477 20 N -0.375 5.375 21 C 0.061 3.939 22 H 0.065 0.935 23 C -0.166 4.166 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.149 4.149 27 C -0.106 4.106 28 H 0.114 0.886 29 C -0.204 4.204 30 H 0.025 0.975 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.024 0.976 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.246 0.754 41 H 0.244 0.756 42 H 0.049 0.951 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.068 0.932 51 H 0.095 0.905 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.555 -16.726 6.748 18.602 hybrid contribution 0.451 0.672 -1.150 1.406 sum -4.103 -16.054 5.598 17.490 Atomic orbital electron populations 1.22365 0.82061 1.01116 0.98407 1.87838 1.19090 1.28432 1.95004 1.23255 0.97784 0.84387 0.97581 1.21225 0.89723 0.98885 0.88190 1.44292 1.75584 1.01320 1.09113 1.19424 1.36389 0.90407 0.92169 0.90867 1.25242 1.02575 0.97681 0.98497 1.70077 1.45183 1.16437 1.24379 0.85469 0.80383 0.77369 0.77934 1.19867 1.22706 1.22089 1.20855 0.93811 0.83574 0.97549 1.22350 0.89792 0.79127 0.76812 1.90558 1.41272 1.58532 1.45709 1.44516 1.18429 1.10799 1.61730 1.16594 0.82918 0.83049 0.78205 1.90941 1.41011 1.60187 1.55545 1.45206 1.21167 1.04044 1.67107 1.20832 0.84180 0.94663 0.94208 0.93490 1.21877 0.98491 0.98919 0.97294 1.21457 1.00790 0.95572 0.97230 1.21523 0.99449 0.96055 0.97978 1.21608 0.98376 0.99296 0.95617 1.21381 1.00265 0.93025 0.95953 0.88591 1.21812 0.98650 1.01950 0.97974 0.97460 0.91574 0.92535 0.92354 0.97601 0.90678 0.90077 0.94637 0.89424 0.90924 0.75398 0.75628 0.95132 0.89964 0.92762 0.91716 0.90549 0.91110 0.91881 0.89704 0.93226 0.90474 0.94500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.26 10.84 113.37 1.23 3.49 16 2 O -0.39 -16.97 7.16 -127.41 -0.91 -17.88 16 3 C 0.05 2.00 6.04 71.98 0.43 2.44 16 4 C 0.15 5.76 6.11 86.38 0.53 6.29 16 5 N -0.58 -28.41 2.05 -706.35 -1.45 -29.86 16 6 C -0.25 -13.90 9.49 84.03 0.80 -13.10 16 7 H 0.07 3.97 7.97 -2.91 -0.02 3.95 16 8 C -0.05 -2.49 4.98 84.86 0.42 -2.07 16 9 N -0.91 -52.31 8.77 21.65 0.19 -52.12 16 10 Si 0.96 45.53 29.64 68.60 2.03 47.57 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 13 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 14 C 0.17 7.85 5.35 85.63 0.46 8.31 16 15 C 0.53 26.16 4.78 87.66 0.42 26.58 16 16 O -0.49 -29.37 11.83 27.59 0.33 -29.04 16 17 N -0.69 -27.35 5.24 -440.54 -2.31 -29.66 16 18 C 0.69 28.51 8.47 179.05 1.52 30.03 16 19 O -0.60 -32.13 14.41 18.92 0.27 -31.86 16 20 N -0.72 -20.31 3.54 -457.85 -1.62 -21.93 16 21 C 0.17 4.33 2.23 44.99 0.10 4.43 16 22 H 0.05 1.60 7.58 -2.39 -0.02 1.58 16 23 C -0.13 -3.05 5.60 30.59 0.17 -2.88 16 24 C -0.11 -2.05 5.77 30.59 0.18 -1.87 16 25 C -0.11 -1.42 5.92 30.60 0.18 -1.24 16 26 C -0.11 -1.42 5.03 30.59 0.15 -1.27 16 27 C -0.09 -1.52 2.51 -10.79 -0.03 -1.55 16 28 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 29 C -0.15 -2.79 9.04 71.98 0.65 -2.14 16 30 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.07 2.56 7.85 -2.39 -0.02 2.54 16 36 H 0.08 2.92 8.04 -2.39 -0.02 2.90 16 37 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 38 H 0.09 4.22 6.22 -2.39 -0.01 4.21 16 39 H 0.07 2.74 7.82 -2.39 -0.02 2.72 16 40 H 0.41 12.21 8.71 -92.71 -0.81 11.40 16 41 H 0.41 8.69 6.66 -92.71 -0.62 8.07 16 42 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.05 1.08 7.60 -2.39 -0.02 1.06 16 45 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.06 0.80 6.51 -2.38 -0.02 0.79 16 49 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.05 1.03 7.44 -2.39 -0.02 1.01 16 51 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -81.84 400.83 3.23 -78.61 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.51 Total: 30.72 kcal Atomic # 6 Polarization: 48.24 SS G_CDS: 7.21 Total: 55.45 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -5.19 Total: -133.57 kcal Atomic # 8 Polarization: -78.47 SS G_CDS: -0.31 Total: -78.79 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.57 kcal Total: -81.84 3.23 -78.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459545370.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.649 kcal (2) G-P(sol) polarization free energy of solvation -81.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds