Wall clock time and date at job start Wed Apr 1 2020 01:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.61118 * 2 1 4 4 C 1.53371 * 109.61120 * 120.33758 * 2 1 3 5 5 N 1.46965 * 108.63594 * 169.34345 * 4 2 1 6 6 C 1.34776 * 120.59480 * 124.75380 * 5 4 2 7 7 O 1.21584 * 120.00106 * 185.18293 * 6 5 4 8 8 N 1.34776 * 119.99823 * 5.17985 * 6 5 4 9 9 C 1.46509 * 119.99827 * 175.02078 * 8 6 5 10 10 C 1.52998 * 109.47189 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.47291 * 180.02562 * 10 9 8 12 12 H 1.07995 * 119.99904 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00137 * 179.72372 * 11 10 9 14 14 N 1.31513 * 119.99608 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99914 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47328 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46656 * 120.00275 * 15 13 11 18 18 H 1.48501 * 109.47251 * 240.00262 * 15 13 11 19 19 C 1.46964 * 118.80871 * 305.02188 * 5 4 2 20 20 C 1.52932 * 108.86991 * 54.93990 * 19 5 4 21 21 N 1.46963 * 109.75278 * 239.56951 * 2 1 3 22 22 C 1.34773 * 120.59434 * 4.96478 * 21 2 1 23 23 O 1.21513 * 120.00010 * 354.94811 * 22 21 2 24 24 O 1.34642 * 119.99836 * 174.93981 * 22 21 2 25 25 C 1.45205 * 116.99616 * 180.02562 * 24 22 21 26 26 C 1.53001 * 109.47337 * 60.00050 * 25 24 22 27 27 C 1.52998 * 109.46762 * 179.97438 * 25 24 22 28 28 C 1.52998 * 109.46915 * 299.99952 * 25 24 22 29 29 H 1.08996 * 109.47107 * 298.19655 * 1 2 3 30 30 H 1.09008 * 109.46932 * 58.20113 * 1 2 3 31 31 H 1.08999 * 109.46850 * 178.19430 * 1 2 3 32 32 H 1.09001 * 109.60694 * 49.59649 * 4 2 1 33 33 H 1.09003 * 109.60871 * 289.08930 * 4 2 1 34 34 H 0.97004 * 120.00545 * 355.02812 * 8 6 5 35 35 H 1.08994 * 109.46750 * 60.00538 * 9 8 6 36 36 H 1.08996 * 109.47364 * 300.00365 * 9 8 6 37 37 H 1.09002 * 109.47082 * 59.99970 * 10 9 8 38 38 H 1.09004 * 109.47464 * 300.01009 * 10 9 8 39 39 H 0.97003 * 119.99381 * 179.97438 * 14 13 11 40 40 H 1.09006 * 109.60416 * 174.72140 * 19 5 4 41 41 H 1.08996 * 109.61214 * 295.23124 * 19 5 4 42 42 H 1.09003 * 109.68550 * 190.96133 * 20 19 5 43 43 H 1.08994 * 109.61816 * 70.57423 * 20 19 5 44 44 H 1.09006 * 109.46811 * 59.99686 * 26 25 24 45 45 H 1.08992 * 109.47005 * 179.97438 * 26 25 24 46 46 H 1.09001 * 109.47278 * 300.00095 * 26 25 24 47 47 H 1.09004 * 109.47105 * 60.00563 * 27 25 24 48 48 H 1.09004 * 109.46831 * 179.97438 * 27 25 24 49 49 H 1.08995 * 109.47723 * 299.99978 * 27 25 24 50 50 H 1.08998 * 109.47163 * 60.00832 * 28 25 24 51 51 H 1.09002 * 109.46870 * 180.02562 * 28 25 24 52 52 H 1.08996 * 109.47346 * 299.99959 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7297 1.2469 5 7 3.4916 -0.9434 1.1022 6 6 4.3476 -0.5045 2.0461 7 8 5.5469 -0.6024 1.8721 8 7 3.8741 0.0432 3.1829 9 6 4.7989 0.4203 4.2549 10 6 4.0101 1.0134 5.4239 11 6 4.9613 1.4018 6.5262 12 1 6.0225 1.2421 6.4049 13 6 4.4775 1.9669 7.6871 14 7 3.1858 2.1665 7.8326 15 14 5.6567 2.4478 9.0538 16 1 7.0468 2.1212 8.6459 17 1 5.5467 3.9060 9.3121 18 1 5.3141 1.6989 10.2895 19 6 3.9886 -1.6391 -0.0931 20 6 3.4735 -0.9143 -1.3373 21 7 2.0267 -0.7006 -1.1926 22 6 1.1707 -1.1388 -2.1369 23 8 -0.0279 -1.0384 -1.9642 24 8 1.6437 -1.6877 -3.2717 25 6 0.6641 -2.1372 -4.2447 26 6 -0.1950 -0.9516 -4.6886 27 6 1.3846 -2.7270 -5.4587 28 6 -0.2295 -3.2061 -3.6123 29 1 -0.3633 0.4856 0.9057 30 1 -0.3633 0.5416 -0.8735 31 1 -0.3633 -1.0272 -0.0324 32 1 1.5406 -1.6914 1.3421 33 1 1.8512 -0.1232 2.1317 34 1 2.9211 0.1876 3.2916 35 1 5.5062 1.1604 3.8808 36 1 5.3416 -0.4622 4.5937 37 1 3.3029 0.2729 5.7979 38 1 3.4669 1.8957 5.0853 39 1 2.8454 2.5637 8.6495 40 1 5.0787 -1.6330 -0.0931 41 1 3.6261 -2.6670 -0.0955 42 1 3.6670 -1.5208 -2.2221 43 1 3.9773 0.0472 -1.4356 44 1 0.4416 -0.1901 -5.1391 45 1 -0.9301 -1.2889 -5.4192 46 1 -0.7083 -0.5309 -3.8239 47 1 1.9969 -3.5717 -5.1428 48 1 0.6492 -3.0649 -6.1889 49 1 2.0210 -1.9653 -5.9091 50 1 -0.7428 -2.7854 -2.7477 51 1 -0.9646 -3.5438 -4.3428 52 1 0.3826 -4.0507 -3.2961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492527625.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:35:21 Heat of formation + Delta-G solvation = -89.169405 kcal Electronic energy + Delta-G solvation = -31163.347503 eV Core-core repulsion = 26971.092658 eV Total energy + Delta-G solvation = -4192.254845 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38358 -40.10951 -38.47365 -36.69479 -34.98339 -34.73500 -33.87496 -33.05200 -32.52603 -29.83413 -28.36579 -27.76511 -27.70299 -26.54931 -24.82745 -23.64893 -23.06507 -21.33760 -21.03933 -20.02970 -19.33795 -18.24467 -17.38304 -16.83624 -16.54933 -16.44098 -15.92634 -15.78429 -15.48408 -14.96946 -14.79615 -14.51435 -14.36122 -14.15192 -13.92692 -13.85931 -13.64157 -12.99237 -12.87899 -12.78770 -12.70624 -12.50810 -12.32905 -12.26568 -12.15707 -12.03833 -11.84798 -11.75505 -11.58843 -11.37195 -11.34813 -11.14661 -11.05716 -10.62424 -10.61693 -10.35199 -9.95379 -9.60849 -9.54137 -9.36898 -9.25705 -8.66161 -8.44981 -8.19317 -6.09837 -4.12314 1.79701 2.58423 2.79886 3.28354 3.36053 3.41274 3.46513 3.48372 4.11932 4.37320 4.41929 4.42501 4.48633 4.56170 4.64212 4.75024 4.86333 5.00049 5.08278 5.11841 5.19252 5.21909 5.26409 5.27476 5.34267 5.42543 5.48491 5.51841 5.53862 5.63992 5.64959 5.70619 5.91501 5.94177 5.95830 6.10006 6.14684 6.21941 6.36180 6.38050 6.48121 6.75407 6.95054 7.04575 7.16960 7.54311 7.61786 7.89257 8.10191 8.21206 8.32525 8.87841 8.94896 9.52521 11.01837 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028054 B = 0.002012 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.831331 B =13914.529393 C =14608.513703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.145 3.855 3 H 0.083 0.917 4 C 0.101 3.899 5 N -0.637 5.637 6 C 0.704 3.296 7 O -0.593 6.593 8 N -0.738 5.738 9 C 0.139 3.861 10 C 0.013 3.987 11 C -0.520 4.520 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.117 3.883 20 C 0.098 3.902 21 N -0.592 5.592 22 C 0.654 3.346 23 O -0.560 6.560 24 O -0.366 6.366 25 C 0.137 3.863 26 C -0.183 4.183 27 C -0.141 4.141 28 C -0.182 4.182 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.392 0.608 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.261 0.739 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.068 0.932 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.371 -9.359 -26.814 29.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 H 0.101 0.899 4 C -0.023 4.023 5 N -0.376 5.376 6 C 0.405 3.595 7 O -0.472 6.472 8 N -0.393 5.393 9 C 0.016 3.984 10 C -0.025 4.025 11 C -0.558 4.558 12 H 0.079 0.921 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.007 4.007 20 C -0.026 4.026 21 N -0.333 5.333 22 C 0.410 3.590 23 O -0.450 6.450 24 O -0.281 6.281 25 C 0.100 3.900 26 C -0.240 4.240 27 C -0.198 4.198 28 C -0.240 4.240 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.126 0.874 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.087 0.913 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.964 -9.369 -26.779 29.467 hybrid contribution 0.034 0.379 0.827 0.911 sum -7.930 -8.990 -25.951 28.586 Atomic orbital electron populations 1.22226 0.91193 1.04323 1.01788 1.21714 0.96569 0.95176 0.82301 0.89926 1.22141 0.81139 1.01259 0.97806 1.47216 1.05742 1.62323 1.22290 1.15953 0.84880 0.78396 0.80238 1.90879 1.13381 1.63344 1.79568 1.45725 1.11337 1.65784 1.16460 1.21622 0.91891 0.98892 0.85971 1.19330 0.95893 0.96132 0.91131 1.21081 0.93664 1.40837 1.00267 0.92150 1.25001 0.95221 0.95588 0.98552 1.69966 1.12141 1.44063 1.27110 0.86454 0.81236 0.78131 0.81724 1.19572 1.20961 1.20954 1.21690 1.01683 0.94754 0.82589 1.22123 0.79283 1.01955 0.99198 1.46981 1.06615 1.59524 1.20139 1.18068 0.84141 0.76902 0.79913 1.90960 1.14064 1.60713 1.79297 1.86299 1.41151 1.73304 1.27366 1.22042 0.87322 0.94320 0.86331 1.22510 1.00279 0.97756 1.03424 1.21861 1.01174 1.01476 0.95296 1.22506 1.00066 0.98193 1.03198 0.92803 0.90460 0.90521 0.90671 0.88634 0.77224 0.92628 0.92778 0.95993 0.95964 0.92915 0.87371 0.91489 0.87976 0.90580 0.92293 0.91277 0.89309 0.91475 0.90228 0.91504 0.89294 0.91287 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 7.58 37.16 0.28 -1.06 16 2 C 0.15 1.46 3.64 -67.49 -0.25 1.22 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.10 1.08 5.87 -3.60 -0.02 1.06 16 5 N -0.64 -8.33 2.95 -178.48 -0.53 -8.85 16 6 C 0.70 12.21 8.29 -86.92 -0.72 11.49 16 7 O -0.59 -12.40 15.76 5.29 0.08 -12.32 16 8 N -0.74 -13.01 5.47 -65.22 -0.36 -13.36 16 9 C 0.14 2.96 5.62 -4.04 -0.02 2.94 16 10 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 11 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 15 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.12 1.27 6.57 -3.82 -0.03 1.25 16 20 C 0.10 0.91 6.58 -3.82 -0.03 0.88 16 21 N -0.59 -6.03 2.95 -170.96 -0.50 -6.54 16 22 C 0.65 7.08 7.65 54.05 0.41 7.49 16 23 O -0.56 -6.59 7.28 -19.28 -0.14 -6.73 16 24 O -0.37 -3.58 8.54 -40.33 -0.34 -3.92 16 25 C 0.14 1.08 1.13 -90.62 -0.10 0.97 16 26 C -0.18 -1.41 8.37 37.16 0.31 -1.10 16 27 C -0.14 -0.79 8.85 37.16 0.33 -0.46 16 28 C -0.18 -1.41 8.37 37.16 0.31 -1.10 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.84 6.73 -51.92 -0.35 0.49 16 31 H 0.08 0.83 6.78 -51.93 -0.35 0.48 16 32 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.10 0.98 5.61 -51.93 -0.29 0.69 16 34 H 0.39 6.02 5.95 -40.82 -0.24 5.77 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.11 1.29 6.99 -51.93 -0.36 0.93 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.80 6.94 -51.93 -0.36 0.44 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.87 5.88 -51.93 -0.31 0.57 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.09 0.88 5.88 -51.93 -0.31 0.57 16 51 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 402.33 15.07 6.06 6.06 Total: -1.00 -32.46 402.33 -8.95 -41.41 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.87 Total: 2.55 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -0.07 Total: 10.61 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.65 Total: -53.97 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.40 Total: -22.96 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.46 -8.95 -41.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492527625.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.757 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds