Wall clock time and date at job start Wed Apr 1 2020 01:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.50325 * 2 1 4 4 C 1.53033 * 109.50718 * 239.87859 * 2 1 3 5 5 N 1.46848 * 109.52608 * 180.87882 * 4 2 1 6 6 C 1.46904 * 110.99639 * 185.84372 * 5 4 2 7 7 C 1.50693 * 109.47549 * 66.38800 * 6 5 4 8 8 O 1.21296 * 120.00007 * 6.26597 * 7 6 5 9 9 N 1.34778 * 120.00261 * 186.26476 * 7 6 5 10 10 C 1.37095 * 120.00345 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99746 * 0.02562 * 10 9 7 12 12 C 1.38946 * 120.00202 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00091 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99909 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.46891 * 89.99866 * 14 12 10 16 16 H 1.48501 * 109.46859 * 209.99741 * 14 12 10 17 17 H 1.48497 * 109.47056 * 329.99682 * 14 12 10 18 18 C 1.46842 * 111.19842 * 61.74040 * 5 4 2 19 19 C 1.53169 * 109.56032 * 298.25857 * 18 5 4 20 20 C 1.53122 * 109.50425 * 120.07478 * 2 1 3 21 21 H 1.08998 * 109.52697 * 297.56389 * 20 2 1 22 22 N 1.46494 * 109.52287 * 57.69300 * 20 2 1 23 23 C 1.34774 * 120.00328 * 204.87000 * 22 20 2 24 24 O 1.21517 * 119.99656 * 0.02562 * 23 22 20 25 25 O 1.34636 * 120.00273 * 179.97438 * 23 22 20 26 26 C 1.45200 * 116.99935 * 180.02562 * 25 23 22 27 27 C 1.52996 * 109.47436 * 60.00491 * 26 25 23 28 28 C 1.53003 * 109.47544 * 300.00360 * 26 25 23 29 29 C 1.53005 * 109.47289 * 180.02562 * 26 25 23 30 30 H 1.09000 * 109.47374 * 299.92195 * 1 2 3 31 31 H 1.08992 * 109.47270 * 59.92406 * 1 2 3 32 32 H 1.09010 * 109.46761 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46107 * 300.89570 * 4 2 1 34 34 H 1.09006 * 109.46101 * 60.86447 * 4 2 1 35 35 H 1.09004 * 109.46546 * 186.38353 * 6 5 4 36 36 H 1.08994 * 109.47099 * 306.37845 * 6 5 4 37 37 H 0.97004 * 119.99763 * 0.02562 * 9 7 6 38 38 H 0.97000 * 120.00050 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.45929 * 58.27688 * 18 5 4 40 40 H 1.09003 * 109.46269 * 178.24817 * 18 5 4 41 41 H 1.08999 * 109.48739 * 299.25021 * 19 18 5 42 42 H 1.08991 * 109.58756 * 179.08455 * 19 18 5 43 43 H 0.97003 * 120.00071 * 24.87228 * 22 20 2 44 44 H 1.09005 * 109.47087 * 300.00125 * 27 26 25 45 45 H 1.08998 * 109.47492 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.47032 * 59.99198 * 27 26 25 47 47 H 1.08998 * 109.47426 * 180.02562 * 28 26 25 48 48 H 1.08999 * 109.46735 * 300.00114 * 28 26 25 49 49 H 1.09003 * 109.47177 * 59.99778 * 28 26 25 50 50 H 1.08999 * 109.46685 * 300.00499 * 29 26 25 51 51 H 1.09005 * 109.46427 * 60.00271 * 29 26 25 52 52 H 1.08998 * 109.47351 * 180.02562 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7239 -1.2477 5 7 3.5093 -0.7425 -1.2375 6 6 4.0372 -1.3067 -2.4869 7 6 3.7055 -0.3865 -3.6333 8 8 3.1915 0.6906 -3.4172 9 7 3.9801 -0.7604 -4.8987 10 6 3.6779 0.0765 -5.9417 11 1 3.2202 1.0356 -5.7493 12 6 3.9606 -0.3092 -7.2463 13 7 3.6704 0.4928 -8.2461 14 14 4.7517 -1.9684 -7.5792 15 1 3.6930 -2.9922 -7.7694 16 1 5.5837 -1.8827 -8.8063 17 1 5.6071 -2.3490 -6.4266 18 6 4.0229 -1.4729 -0.0718 19 6 3.5712 -0.7714 1.2127 20 6 2.0412 -0.7233 1.2490 21 1 1.7147 -0.1869 2.1399 22 7 1.5090 -2.0879 1.2768 23 6 1.3846 -2.7390 2.4502 24 8 1.7135 -2.1940 3.4853 25 8 0.8951 -3.9930 2.4757 26 6 0.7886 -4.6327 3.7749 27 6 -0.1380 -3.8114 4.6735 28 6 2.1752 -4.7196 4.4159 29 6 0.2171 -6.0417 3.6043 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3633 -1.0278 -0.0005 33 1 1.6648 -1.7469 -1.2536 34 1 1.6905 -0.2030 -2.1388 35 1 5.1191 -1.4139 -2.4085 36 1 3.5871 -2.2836 -2.6632 37 1 4.3909 -1.6220 -5.0716 38 1 3.8681 0.2237 -9.1568 39 1 3.6375 -2.4924 -0.0833 40 1 5.1121 -1.4960 -0.1087 41 1 3.9678 0.2438 1.2314 42 1 3.9386 -1.3222 2.0785 43 1 1.2462 -2.5229 0.4505 44 1 0.2695 -2.8077 4.7950 45 1 -0.2183 -4.2919 5.6485 46 1 -1.1258 -3.7495 4.2168 47 1 2.0953 -5.2002 5.3909 48 1 2.8354 -5.3048 3.7757 49 1 2.5828 -3.7160 4.5374 50 1 -0.7707 -5.9802 3.1474 51 1 0.8777 -6.6267 2.9642 52 1 0.1367 -6.5218 4.5795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493778462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:23 Heat of formation + Delta-G solvation = -136.656360 kcal Electronic energy + Delta-G solvation = -31428.324992 eV Core-core repulsion = 27234.010958 eV Total energy + Delta-G solvation = -4194.314034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.98857 -40.88209 -39.81529 -37.97452 -36.24730 -35.72925 -35.05803 -33.75296 -33.58794 -32.29202 -29.09126 -28.32433 -28.26803 -27.53474 -26.37301 -24.50079 -23.42553 -22.74457 -21.22157 -21.11196 -20.17143 -20.12147 -19.31263 -17.75552 -17.48972 -17.21289 -16.86648 -16.58931 -16.57937 -16.08885 -15.81028 -15.57289 -15.33512 -15.19289 -14.96494 -14.83745 -14.51899 -14.35683 -14.27590 -13.71962 -13.65072 -13.38109 -13.30413 -13.13564 -13.01763 -12.87165 -12.83490 -12.77003 -12.61532 -12.50486 -12.39450 -12.29864 -12.22474 -11.97393 -11.90284 -11.66109 -11.50185 -11.35327 -11.28590 -11.05372 -10.32611 -10.20209 -10.15752 -9.16428 -8.39045 -5.99192 1.20694 1.31108 1.36160 1.45051 1.81453 1.99569 2.24254 2.61273 3.15889 3.17452 3.22965 3.58792 3.78733 3.79820 3.84258 3.92631 3.98323 4.10358 4.18870 4.28456 4.38430 4.42174 4.49603 4.54374 4.58716 4.63847 4.64949 4.72173 4.76883 4.79893 4.84808 4.87936 4.89071 4.90885 4.97748 5.07228 5.15722 5.17213 5.26539 5.27406 5.31804 5.35841 5.46050 5.55593 5.61872 5.92830 6.05537 6.22732 6.42503 6.62788 6.91784 7.37787 7.43441 8.01011 8.78591 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.002365 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.620978 B =11836.145551 C =12405.714306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 H 0.086 0.914 4 C 0.063 3.937 5 N -0.534 5.534 6 C 0.054 3.946 7 C 0.453 3.547 8 O -0.602 6.602 9 N -0.595 5.595 10 C -0.323 4.323 11 H 0.056 0.944 12 C -0.017 4.017 13 N -0.936 5.936 14 Si 0.963 3.037 15 H -0.258 1.258 16 H -0.277 1.277 17 H -0.231 1.231 18 C 0.061 3.939 19 C -0.121 4.121 20 C 0.176 3.824 21 H 0.089 0.911 22 N -0.694 5.694 23 C 0.649 3.351 24 O -0.589 6.589 25 O -0.373 6.373 26 C 0.125 3.875 27 C -0.179 4.179 28 C -0.179 4.179 29 C -0.137 4.137 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.388 0.612 38 H 0.278 0.722 39 H 0.041 0.959 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.408 0.592 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.059 0.941 47 H 0.089 0.911 48 H 0.060 0.940 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 -16.874 25.617 30.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 H 0.104 0.896 4 C -0.065 4.065 5 N -0.259 5.259 6 C -0.077 4.077 7 C 0.240 3.760 8 O -0.485 6.485 9 N -0.237 5.237 10 C -0.452 4.452 11 H 0.074 0.926 12 C -0.215 4.215 13 N -0.577 5.577 14 Si 0.784 3.216 15 H -0.182 1.182 16 H -0.202 1.202 17 H -0.155 1.155 18 C -0.066 4.066 19 C -0.160 4.160 20 C 0.072 3.928 21 H 0.107 0.893 22 N -0.354 5.354 23 C 0.403 3.597 24 O -0.480 6.480 25 O -0.288 6.288 26 C 0.089 3.911 27 C -0.236 4.236 28 C -0.236 4.236 29 C -0.194 4.194 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.094 0.906 37 H 0.224 0.776 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.244 0.756 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.864 -15.419 26.155 30.606 hybrid contribution -0.007 -1.096 -1.411 1.787 sum -3.870 -16.514 24.744 29.999 Atomic orbital electron populations 1.21733 0.93512 1.02341 1.02261 1.21343 0.96468 1.00181 0.92389 0.89594 1.22123 0.86997 0.98478 0.98866 1.61408 1.08533 1.54764 1.01154 1.21815 1.02877 0.95046 0.87930 1.20868 0.82422 0.88726 0.83957 1.90537 1.47490 1.25863 1.84620 1.42067 1.57419 1.18620 1.05574 1.18976 1.39576 1.00780 0.85898 0.92601 1.26095 0.97938 1.03313 0.94179 1.69806 1.48543 1.39224 1.00114 0.85384 0.79280 0.77299 0.79676 1.18240 1.20218 1.15460 1.22127 1.00695 0.94861 0.88915 1.21960 0.94728 1.02485 0.96830 1.20957 0.93345 0.79795 0.98677 0.89272 1.44889 1.67454 1.16087 1.06945 1.18188 0.76624 0.80473 0.84409 1.90887 1.55765 1.68853 1.32455 1.86320 1.77841 1.27058 1.37548 1.22381 0.96759 0.93182 0.78758 1.22465 0.98972 1.01688 1.00484 1.22462 0.95536 1.03581 1.01998 1.21890 1.01583 0.91528 1.04397 0.91440 0.92851 0.92041 0.94313 0.92180 0.86331 0.90570 0.77645 0.91260 0.94126 0.89485 0.89897 0.90620 0.75571 0.91762 0.89217 0.92177 0.89248 0.92117 0.91712 0.91397 0.91354 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.02 71.98 0.65 -2.28 16 2 C -0.08 -1.98 2.67 -10.74 -0.03 -2.01 16 3 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.06 1.77 4.24 86.32 0.37 2.14 16 5 N -0.53 -15.17 4.35 -900.67 -3.92 -19.09 16 6 C 0.05 1.62 5.45 85.55 0.47 2.09 16 7 C 0.45 19.92 7.31 87.65 0.64 20.56 16 8 O -0.60 -32.37 14.29 -3.08 -0.04 -32.42 16 9 N -0.59 -27.58 5.09 -306.99 -1.56 -29.14 16 10 C -0.32 -18.72 10.16 84.04 0.85 -17.87 16 11 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 12 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 13 N -0.94 -56.32 13.96 21.66 0.30 -56.02 16 14 Si 0.96 38.54 27.74 68.60 1.90 40.44 16 15 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 16 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 18 C 0.06 1.30 5.31 86.37 0.46 1.76 16 19 C -0.12 -2.49 5.78 30.69 0.18 -2.32 16 20 C 0.18 3.65 2.27 45.08 0.10 3.75 16 21 H 0.09 1.96 7.58 -2.39 -0.02 1.94 16 22 N -0.69 -13.58 3.63 -569.74 -2.07 -15.65 16 23 C 0.65 14.46 8.02 129.79 1.04 15.50 16 24 O -0.59 -15.38 11.55 19.79 0.23 -15.15 16 25 O -0.37 -7.56 9.94 -55.45 -0.55 -8.11 16 26 C 0.13 1.99 1.13 -10.79 -0.01 1.97 16 27 C -0.18 -2.79 8.37 71.98 0.60 -2.19 16 28 C -0.18 -2.76 8.37 71.98 0.60 -2.16 16 29 C -0.14 -1.41 8.85 71.98 0.64 -0.77 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.16 7.30 -2.38 -0.02 1.14 16 33 H 0.04 0.93 6.64 -2.39 -0.02 0.91 16 34 H 0.06 2.24 6.06 -2.38 -0.01 2.22 16 35 H 0.12 2.95 7.98 -2.38 -0.02 2.93 16 36 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 37 H 0.39 14.92 5.76 -92.71 -0.53 14.38 16 38 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.04 0.79 7.69 -2.39 -0.02 0.77 16 40 H 0.09 1.67 8.01 -2.39 -0.02 1.65 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 43 H 0.41 7.32 6.76 -92.71 -0.63 6.69 16 44 H 0.06 1.35 5.88 -2.38 -0.01 1.34 16 45 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 49 H 0.06 1.35 5.88 -2.39 -0.01 1.33 16 50 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 51 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 52 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -75.80 400.77 1.02 -74.77 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: -0.29 Total: 42.65 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 7.03 Total: 17.71 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -7.24 Total: -119.90 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: -0.37 Total: -55.68 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 1.90 Total: 40.44 kcal Total: -75.80 1.02 -74.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493778462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.882 kcal (2) G-P(sol) polarization free energy of solvation -75.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds