Wall clock time and date at job start Wed Apr 1 2020 01:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.50879 * 2 1 4 4 C 1.53035 * 109.53807 * 120.10293 * 2 1 3 5 5 N 1.46840 * 109.52994 * 179.13923 * 4 2 1 6 6 C 1.46895 * 111.00367 * 174.15975 * 5 4 2 7 7 C 1.50706 * 109.47267 * 190.00157 * 6 5 4 8 8 O 1.21284 * 119.99642 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99793 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99495 * 180.02562 * 9 7 6 11 11 H 1.07993 * 120.00374 * 359.97438 * 10 9 7 12 12 C 1.38958 * 119.99629 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00046 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99793 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47319 * 59.99905 * 14 12 10 16 16 H 1.48496 * 109.47105 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46980 * 299.99954 * 14 12 10 18 18 C 1.46854 * 111.23238 * 298.28004 * 5 4 2 19 19 C 1.53037 * 109.52285 * 61.67711 * 18 5 4 20 20 C 1.53114 * 109.31211 * 300.88400 * 19 18 5 21 21 H 1.09003 * 109.52723 * 177.60069 * 20 19 18 22 22 N 1.46502 * 109.52306 * 297.72972 * 20 19 18 23 23 C 1.34778 * 120.00265 * 275.00042 * 22 20 19 24 24 O 1.21507 * 119.99343 * 0.02562 * 23 22 20 25 25 O 1.34631 * 120.00197 * 179.97438 * 23 22 20 26 26 C 1.45197 * 117.00089 * 179.97438 * 25 23 22 27 27 C 1.52992 * 109.47093 * 60.00292 * 26 25 23 28 28 C 1.53006 * 109.47109 * 180.02562 * 26 25 23 29 29 C 1.53001 * 109.47220 * 300.00106 * 26 25 23 30 30 H 1.09000 * 109.47142 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47296 * 300.07973 * 1 2 3 32 32 H 1.09007 * 109.46864 * 60.07598 * 1 2 3 33 33 H 1.09001 * 109.46056 * 299.15853 * 4 2 1 34 34 H 1.09003 * 109.46054 * 59.13019 * 4 2 1 35 35 H 1.09006 * 109.47095 * 309.99856 * 6 5 4 36 36 H 1.08994 * 109.47117 * 69.99934 * 6 5 4 37 37 H 0.96995 * 120.00333 * 359.97438 * 9 7 6 38 38 H 0.97001 * 119.99745 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.42692 * 301.68444 * 18 5 4 40 40 H 1.09000 * 109.49358 * 181.71437 * 18 5 4 41 41 H 1.09002 * 109.50283 * 180.92217 * 19 18 5 42 42 H 1.09003 * 109.50113 * 60.84405 * 19 18 5 43 43 H 0.97010 * 119.99857 * 95.00214 * 22 20 19 44 44 H 1.09005 * 109.47495 * 59.99914 * 27 26 25 45 45 H 1.09001 * 109.47615 * 180.02562 * 27 26 25 46 46 H 1.09005 * 109.47486 * 299.99972 * 27 26 25 47 47 H 1.08997 * 109.47375 * 60.00351 * 28 26 25 48 48 H 1.09001 * 109.46651 * 180.02562 * 28 26 25 49 49 H 1.08995 * 109.46976 * 299.99722 * 28 26 25 50 50 H 1.09005 * 109.46762 * 60.00394 * 29 26 25 51 51 H 1.09001 * 109.47157 * 179.97438 * 29 26 25 52 52 H 1.08997 * 109.47432 * 299.99751 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0418 -0.7234 1.2477 5 7 3.5100 -0.7413 1.2371 6 6 4.0387 -1.3049 2.4864 7 6 5.5283 -1.0844 2.5462 8 8 6.0937 -0.5134 1.6378 9 7 6.2319 -1.5208 3.6097 10 6 7.5870 -1.3196 3.6643 11 1 8.0906 -0.8120 2.8551 12 6 8.3124 -1.7691 4.7610 13 7 7.6996 -2.3873 5.7455 14 14 10.1588 -1.4957 4.8352 15 1 10.4459 -0.0395 4.7874 16 1 10.6931 -2.0649 6.0983 17 1 10.8052 -2.1659 3.6783 18 6 4.0246 -1.4711 0.0713 19 6 3.5712 -0.7706 -1.2115 20 6 2.0413 -0.7233 -1.2491 21 1 1.7151 -0.1875 -2.1405 22 7 1.5098 -2.0882 -1.2764 23 6 1.3889 -2.7411 -2.4493 24 8 1.7212 -2.1976 -3.4840 25 8 0.9009 -3.9956 -2.4743 26 6 0.7982 -4.6372 -3.7727 27 6 2.1864 -4.7233 -4.4102 28 6 0.2268 -6.0462 -3.6017 29 6 -0.1273 -3.8180 -4.6746 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5151 0.8893 32 1 -0.3633 0.5127 -0.8907 33 1 1.6913 -0.2026 2.1388 34 1 1.6662 -1.7466 1.2539 35 1 3.5643 -0.8137 3.3360 36 1 3.8280 -2.3738 2.5205 37 1 5.7796 -1.9764 4.3367 38 1 8.2060 -2.7007 6.5112 39 1 3.6403 -2.4910 0.0835 40 1 5.1138 -1.4931 0.1077 41 1 3.9396 -1.3218 -2.0768 42 1 3.9673 0.2447 -1.2312 43 1 1.2448 -2.5222 -0.4502 44 1 2.8458 -5.3069 -3.7677 45 1 2.1093 -5.2045 -5.3852 46 1 2.5932 -3.7194 -4.5322 47 1 -0.7623 -5.9845 -3.1477 48 1 0.1501 -6.5279 -4.5764 49 1 0.8858 -6.6299 -2.9591 50 1 0.2796 -2.8141 -4.7966 51 1 -0.2040 -4.2995 -5.6496 52 1 -1.1162 -3.7567 -4.2205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493778464.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:28 Heat of formation + Delta-G solvation = -119.564048 kcal Electronic energy + Delta-G solvation = -31384.124142 eV Core-core repulsion = 27190.551286 eV Total energy + Delta-G solvation = -4193.572856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.04368 -39.67223 -38.11620 -36.94221 -34.93153 -34.27003 -33.76573 -32.68036 -31.41130 -30.99848 -27.66329 -27.60053 -27.58984 -26.43165 -24.69914 -23.33694 -22.36925 -21.84427 -20.28660 -19.12671 -19.10768 -18.43360 -17.83107 -16.65459 -16.29910 -16.07404 -15.54114 -15.39071 -14.93636 -14.75109 -14.73153 -14.43429 -14.15567 -14.01420 -13.78942 -13.65830 -13.57624 -13.07684 -12.77878 -12.68411 -12.46304 -12.33714 -12.13501 -12.11165 -11.97122 -11.87060 -11.70988 -11.55708 -11.50124 -11.34605 -11.16352 -10.99918 -10.96284 -10.63297 -10.51113 -10.43066 -10.27232 -10.19136 -10.13633 -9.46281 -9.17990 -8.40716 -7.96665 -7.82874 -6.40873 -3.81510 2.07492 2.78128 3.20653 3.26253 3.30655 3.90364 3.94485 4.03970 4.24372 4.47788 4.50310 4.52333 4.66617 4.76592 4.88034 5.03248 5.20904 5.22600 5.25752 5.27477 5.29453 5.39504 5.42591 5.43406 5.48697 5.52788 5.59557 5.62709 5.62844 5.67988 5.73413 5.81180 5.84852 5.92361 5.96495 6.02670 6.06147 6.09092 6.15257 6.27721 6.30884 6.38001 6.51235 6.55615 7.28415 7.35784 7.43126 7.55957 8.07327 8.31283 8.62955 9.19126 9.55597 10.07555 10.76862 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.002399 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.553898 B =11666.891825 C =12592.910686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.100 0.900 4 C 0.059 3.941 5 N -0.514 5.514 6 C 0.047 3.953 7 C 0.444 3.556 8 O -0.576 6.576 9 N -0.565 5.565 10 C -0.298 4.298 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.055 3.945 19 C -0.125 4.125 20 C 0.166 3.834 21 H 0.091 0.909 22 N -0.701 5.701 23 C 0.650 3.350 24 O -0.569 6.569 25 O -0.368 6.368 26 C 0.137 3.863 27 C -0.184 4.184 28 C -0.141 4.141 29 C -0.182 4.182 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.026 0.974 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.020 0.980 40 H 0.104 0.896 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.402 0.598 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.068 0.932 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.235 -3.866 -14.233 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.118 0.882 4 C -0.070 4.070 5 N -0.238 5.238 6 C -0.085 4.085 7 C 0.229 3.771 8 O -0.460 6.460 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.073 4.073 19 C -0.163 4.163 20 C 0.063 3.937 21 H 0.109 0.891 22 N -0.360 5.360 23 C 0.404 3.596 24 O -0.458 6.458 25 O -0.283 6.283 26 C 0.100 3.900 27 C -0.241 4.241 28 C -0.198 4.198 29 C -0.239 4.239 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.238 0.762 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.086 0.914 50 H 0.107 0.893 51 H 0.087 0.913 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.453 -2.877 -15.262 24.119 hybrid contribution 0.250 -1.337 1.076 1.734 sum -18.203 -4.214 -14.186 23.460 Atomic orbital electron populations 1.21791 0.94512 1.01902 1.02109 1.21480 0.95455 1.01070 0.93387 0.88214 1.22157 0.88449 0.98205 0.98173 1.61483 1.05617 1.54905 1.01823 1.21833 0.95965 0.97919 0.92743 1.19736 0.87787 0.84902 0.84657 1.90484 1.71088 1.46030 1.38428 1.41864 1.08226 1.51450 1.18602 1.19642 0.82495 1.35338 1.05313 0.87982 1.25253 1.00592 0.96795 0.95305 1.69602 1.36991 1.38977 1.08842 0.85928 0.82147 0.78799 0.77409 1.19879 1.21006 1.19944 1.22216 1.03077 0.93155 0.88824 1.21974 0.93823 1.02889 0.97662 1.21124 0.93984 0.79550 0.99037 0.89085 1.44955 1.67764 1.16388 1.06940 1.18090 0.76786 0.80198 0.84561 1.90885 1.54717 1.68452 1.31793 1.86299 1.78212 1.27533 1.36227 1.22033 0.96464 0.92044 0.79446 1.22518 0.95722 1.05024 1.00867 1.21862 1.01706 0.93219 1.03031 1.22509 0.99175 1.02928 0.99332 0.92792 0.92113 0.92341 0.90325 0.95602 0.89347 0.93625 0.77527 0.91850 0.96187 0.87770 0.91192 0.89605 0.76239 0.92100 0.91266 0.89244 0.91562 0.90211 0.91428 0.89320 0.91267 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.02 37.16 0.34 -0.84 16 2 C -0.09 -0.96 2.67 -90.54 -0.24 -1.20 16 3 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.06 0.68 4.59 -3.84 -0.02 0.67 16 5 N -0.51 -8.14 4.40 -236.11 -1.04 -9.18 16 6 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 7 C 0.44 10.32 7.46 -10.98 -0.08 10.24 16 8 O -0.58 -15.26 13.90 5.55 0.08 -15.19 16 9 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 10 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 11 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 14 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C 0.05 0.89 4.96 -3.83 -0.02 0.87 16 19 C -0.12 -1.74 5.76 -26.65 -0.15 -1.90 16 20 C 0.17 1.91 2.28 -67.81 -0.15 1.75 16 21 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 22 N -0.70 -7.85 3.64 -58.61 -0.21 -8.06 16 23 C 0.65 8.29 8.02 54.06 0.43 8.72 16 24 O -0.57 -8.28 11.55 -19.28 -0.22 -8.51 16 25 O -0.37 -4.34 9.94 -40.30 -0.40 -4.74 16 26 C 0.14 1.34 1.13 -90.62 -0.10 1.23 16 27 C -0.18 -1.85 8.37 37.15 0.31 -1.54 16 28 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 29 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 30 H 0.05 0.43 7.30 -51.93 -0.38 0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.86 8.02 -51.93 -0.42 0.44 16 34 H 0.03 0.28 6.64 -51.93 -0.34 -0.07 16 35 H 0.09 1.38 7.99 -51.93 -0.41 0.97 16 36 H 0.05 0.74 8.12 -51.93 -0.42 0.31 16 37 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.02 0.31 7.69 -51.93 -0.40 -0.09 16 40 H 0.10 2.11 5.78 -51.93 -0.30 1.81 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.40 4.08 6.76 -40.82 -0.28 3.81 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 1.11 5.88 -51.93 -0.31 0.80 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 403.44 15.07 6.08 6.08 Total: -1.00 -31.43 403.44 -8.26 -39.69 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -8.86 Total: 13.07 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 0.68 Total: 8.82 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.58 Total: -55.29 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.55 Total: -28.43 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.43 -8.26 -39.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493778464.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.875 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds