Wall clock time and date at job start Wed Apr 1 2020 01:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.50879 * 2 1 4 4 C 1.53035 * 109.53807 * 120.10293 * 2 1 3 5 5 N 1.46840 * 109.52994 * 179.13923 * 4 2 1 6 6 C 1.46895 * 111.00367 * 174.15975 * 5 4 2 7 7 C 1.50706 * 109.47267 * 190.00157 * 6 5 4 8 8 O 1.21284 * 119.99642 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99793 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99495 * 180.02562 * 9 7 6 11 11 H 1.07993 * 120.00374 * 359.97438 * 10 9 7 12 12 C 1.38958 * 119.99629 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00046 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99793 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47319 * 59.99905 * 14 12 10 16 16 H 1.48496 * 109.47105 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46980 * 299.99954 * 14 12 10 18 18 C 1.46854 * 111.23238 * 298.28004 * 5 4 2 19 19 C 1.53037 * 109.52285 * 61.67711 * 18 5 4 20 20 C 1.53114 * 109.31211 * 300.88400 * 19 18 5 21 21 H 1.09003 * 109.52723 * 177.60069 * 20 19 18 22 22 N 1.46502 * 109.52306 * 297.72972 * 20 19 18 23 23 C 1.34778 * 120.00265 * 275.00042 * 22 20 19 24 24 O 1.21507 * 119.99343 * 0.02562 * 23 22 20 25 25 O 1.34631 * 120.00197 * 179.97438 * 23 22 20 26 26 C 1.45197 * 117.00089 * 179.97438 * 25 23 22 27 27 C 1.52992 * 109.47093 * 60.00292 * 26 25 23 28 28 C 1.53006 * 109.47109 * 180.02562 * 26 25 23 29 29 C 1.53001 * 109.47220 * 300.00106 * 26 25 23 30 30 H 1.09000 * 109.47142 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47296 * 300.07973 * 1 2 3 32 32 H 1.09007 * 109.46864 * 60.07598 * 1 2 3 33 33 H 1.09001 * 109.46056 * 299.15853 * 4 2 1 34 34 H 1.09003 * 109.46054 * 59.13019 * 4 2 1 35 35 H 1.09006 * 109.47095 * 309.99856 * 6 5 4 36 36 H 1.08994 * 109.47117 * 69.99934 * 6 5 4 37 37 H 0.96995 * 120.00333 * 359.97438 * 9 7 6 38 38 H 0.97001 * 119.99745 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.42692 * 301.68444 * 18 5 4 40 40 H 1.09000 * 109.49358 * 181.71437 * 18 5 4 41 41 H 1.09002 * 109.50283 * 180.92217 * 19 18 5 42 42 H 1.09003 * 109.50113 * 60.84405 * 19 18 5 43 43 H 0.97010 * 119.99857 * 95.00214 * 22 20 19 44 44 H 1.09005 * 109.47495 * 59.99914 * 27 26 25 45 45 H 1.09001 * 109.47615 * 180.02562 * 27 26 25 46 46 H 1.09005 * 109.47486 * 299.99972 * 27 26 25 47 47 H 1.08997 * 109.47375 * 60.00351 * 28 26 25 48 48 H 1.09001 * 109.46651 * 180.02562 * 28 26 25 49 49 H 1.08995 * 109.46976 * 299.99722 * 28 26 25 50 50 H 1.09005 * 109.46762 * 60.00394 * 29 26 25 51 51 H 1.09001 * 109.47157 * 179.97438 * 29 26 25 52 52 H 1.08997 * 109.47432 * 299.99751 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0418 -0.7234 1.2477 5 7 3.5100 -0.7413 1.2371 6 6 4.0387 -1.3049 2.4864 7 6 5.5283 -1.0844 2.5462 8 8 6.0937 -0.5134 1.6378 9 7 6.2319 -1.5208 3.6097 10 6 7.5870 -1.3196 3.6643 11 1 8.0906 -0.8120 2.8551 12 6 8.3124 -1.7691 4.7610 13 7 7.6996 -2.3873 5.7455 14 14 10.1588 -1.4957 4.8352 15 1 10.4459 -0.0395 4.7874 16 1 10.6931 -2.0649 6.0983 17 1 10.8052 -2.1659 3.6783 18 6 4.0246 -1.4711 0.0713 19 6 3.5712 -0.7706 -1.2115 20 6 2.0413 -0.7233 -1.2491 21 1 1.7151 -0.1875 -2.1405 22 7 1.5098 -2.0882 -1.2764 23 6 1.3889 -2.7411 -2.4493 24 8 1.7212 -2.1976 -3.4840 25 8 0.9009 -3.9956 -2.4743 26 6 0.7982 -4.6372 -3.7727 27 6 2.1864 -4.7233 -4.4102 28 6 0.2268 -6.0462 -3.6017 29 6 -0.1273 -3.8180 -4.6746 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5151 0.8893 32 1 -0.3633 0.5127 -0.8907 33 1 1.6913 -0.2026 2.1388 34 1 1.6662 -1.7466 1.2539 35 1 3.5643 -0.8137 3.3360 36 1 3.8280 -2.3738 2.5205 37 1 5.7796 -1.9764 4.3367 38 1 8.2060 -2.7007 6.5112 39 1 3.6403 -2.4910 0.0835 40 1 5.1138 -1.4931 0.1077 41 1 3.9396 -1.3218 -2.0768 42 1 3.9673 0.2447 -1.2312 43 1 1.2448 -2.5222 -0.4502 44 1 2.8458 -5.3069 -3.7677 45 1 2.1093 -5.2045 -5.3852 46 1 2.5932 -3.7194 -4.5322 47 1 -0.7623 -5.9845 -3.1477 48 1 0.1501 -6.5279 -4.5764 49 1 0.8858 -6.6299 -2.9591 50 1 0.2796 -2.8141 -4.7966 51 1 -0.2040 -4.2995 -5.6496 52 1 -1.1162 -3.7567 -4.2205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493778464.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:27 Heat of formation + Delta-G solvation = -141.510271 kcal Electronic energy + Delta-G solvation = -31385.075802 eV Core-core repulsion = 27190.551286 eV Total energy + Delta-G solvation = -4194.524515 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.00049 -40.84006 -39.74186 -37.98289 -36.26081 -35.66798 -35.05160 -33.59148 -33.28809 -32.30334 -29.02568 -28.35253 -28.28485 -27.39495 -26.49308 -24.46507 -23.43326 -22.93254 -21.16919 -20.91515 -20.12865 -19.83999 -19.34010 -17.79579 -17.49645 -17.22350 -16.74200 -16.56892 -16.47128 -16.00818 -15.82355 -15.74464 -15.42107 -15.29244 -15.05573 -14.85069 -14.51284 -14.19400 -14.05241 -13.64248 -13.48007 -13.32428 -13.15463 -13.13668 -12.90281 -12.85387 -12.84230 -12.80623 -12.62249 -12.44784 -12.42404 -12.35682 -12.24316 -12.12452 -11.85930 -11.75858 -11.42008 -11.37522 -11.27770 -11.08014 -10.32593 -10.09495 -9.97033 -9.16103 -8.45478 -5.93626 1.19431 1.39489 1.41118 1.51816 1.79793 2.07984 2.28719 2.75297 3.17031 3.21519 3.39571 3.59419 3.76640 3.80262 3.83961 3.93779 3.96123 4.12253 4.27675 4.35815 4.41533 4.45289 4.51637 4.55650 4.58967 4.62518 4.66285 4.74516 4.77399 4.78092 4.84016 4.84850 4.88862 4.90463 5.04573 5.07794 5.13283 5.20093 5.27119 5.29286 5.32165 5.38845 5.41916 5.46443 5.61128 5.90736 6.09199 6.27023 6.41558 6.62750 7.14791 7.36675 7.58893 8.15250 8.71766 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.002399 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.553898 B =11666.891825 C =12592.910686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.097 0.903 4 C 0.057 3.943 5 N -0.529 5.529 6 C 0.058 3.942 7 C 0.441 3.559 8 O -0.613 6.613 9 N -0.576 5.576 10 C -0.331 4.331 11 H 0.077 0.923 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.990 3.010 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.274 1.274 18 C 0.064 3.936 19 C -0.117 4.117 20 C 0.175 3.825 21 H 0.090 0.910 22 N -0.692 5.692 23 C 0.647 3.353 24 O -0.591 6.591 25 O -0.372 6.372 26 C 0.125 3.875 27 C -0.181 4.181 28 C -0.136 4.136 29 C -0.177 4.177 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.115 0.885 36 H 0.064 0.936 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.026 0.974 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.409 0.591 44 H 0.054 0.946 45 H 0.091 0.909 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.102 0.898 49 H 0.064 0.936 50 H 0.062 0.938 51 H 0.089 0.911 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.381 -4.620 -13.948 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 H 0.115 0.885 4 C -0.070 4.070 5 N -0.254 5.254 6 C -0.073 4.073 7 C 0.228 3.772 8 O -0.499 6.499 9 N -0.213 5.213 10 C -0.461 4.461 11 H 0.095 0.905 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.814 3.186 15 H -0.197 1.197 16 H -0.195 1.195 17 H -0.199 1.199 18 C -0.064 4.064 19 C -0.156 4.156 20 C 0.072 3.928 21 H 0.108 0.892 22 N -0.352 5.352 23 C 0.400 3.600 24 O -0.482 6.482 25 O -0.287 6.287 26 C 0.089 3.911 27 C -0.239 4.239 28 C -0.193 4.193 29 C -0.234 4.234 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.061 0.939 35 H 0.133 0.867 36 H 0.082 0.918 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.246 0.754 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.120 0.880 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.108 0.892 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.638 -3.648 -14.959 25.749 hybrid contribution 0.900 -1.112 0.906 1.694 sum -19.738 -4.760 -14.053 24.693 Atomic orbital electron populations 1.21731 0.92255 1.02511 1.03026 1.21431 0.97086 1.00316 0.91677 0.88528 1.22309 0.85358 0.99681 0.99631 1.61434 1.08450 1.54805 1.00733 1.21721 0.91470 0.99519 0.94555 1.20831 0.90266 0.82959 0.83147 1.90468 1.72712 1.47230 1.39524 1.41933 1.07678 1.52257 1.19460 1.19591 0.84105 1.36856 1.05512 0.90468 1.26001 1.04604 0.96088 0.94583 1.69660 1.38452 1.38998 1.09081 0.85029 0.77076 0.78674 0.77807 1.19717 1.19458 1.19889 1.21971 1.00260 0.93952 0.90194 1.21865 0.96030 1.01731 0.96005 1.20997 0.91843 0.79973 1.00003 0.89181 1.44864 1.67272 1.16174 1.06920 1.18258 0.76637 0.80512 0.84566 1.90885 1.55581 1.69026 1.32671 1.86309 1.77903 1.26894 1.37584 1.22385 0.96463 0.93397 0.78849 1.22484 0.95904 1.03396 1.02082 1.21885 1.01675 0.91330 1.04410 1.22448 0.99004 1.01553 1.00377 0.92315 0.90677 0.91998 0.88567 0.93929 0.86720 0.91784 0.77047 0.91346 0.95605 0.92450 0.92543 0.90575 0.75368 0.92645 0.89057 0.92008 0.90902 0.87966 0.91693 0.91880 0.89215 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.02 71.98 0.65 -1.15 16 2 C -0.09 -1.57 2.67 -10.74 -0.03 -1.59 16 3 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 4 C 0.06 1.19 4.59 86.33 0.40 1.58 16 5 N -0.53 -16.29 4.40 -900.93 -3.96 -20.25 16 6 C 0.06 1.97 5.45 85.56 0.47 2.43 16 7 C 0.44 20.90 7.46 87.66 0.65 21.55 16 8 O -0.61 -33.85 13.90 -3.04 -0.04 -33.89 16 9 N -0.58 -29.57 5.29 -306.98 -1.62 -31.19 16 10 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 11 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 12 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 13 N -0.92 -49.85 13.05 21.66 0.28 -49.56 16 14 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 18 C 0.06 2.12 4.96 86.32 0.43 2.55 16 19 C -0.12 -3.37 5.76 30.64 0.18 -3.20 16 20 C 0.18 3.89 2.28 45.07 0.10 3.99 16 21 H 0.09 2.08 7.58 -2.39 -0.02 2.06 16 22 N -0.69 -14.73 3.64 -569.74 -2.07 -16.80 16 23 C 0.65 16.21 8.02 129.79 1.04 17.25 16 24 O -0.59 -17.44 11.55 19.82 0.23 -17.21 16 25 O -0.37 -8.43 9.94 -55.41 -0.55 -8.98 16 26 C 0.13 2.29 1.13 -10.79 -0.01 2.28 16 27 C -0.18 -3.55 8.37 71.98 0.60 -2.95 16 28 C -0.14 -1.65 8.85 71.98 0.64 -1.01 16 29 C -0.18 -2.98 8.37 71.98 0.60 -2.38 16 30 H 0.06 0.74 7.30 -2.39 -0.02 0.72 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.10 1.72 8.02 -2.39 -0.02 1.71 16 34 H 0.04 0.77 6.64 -2.39 -0.02 0.75 16 35 H 0.11 3.30 7.99 -2.38 -0.02 3.28 16 36 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 37 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 38 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 39 H 0.03 0.81 7.69 -2.39 -0.02 0.79 16 40 H 0.06 2.46 5.78 -2.39 -0.01 2.44 16 41 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 43 H 0.41 7.48 6.76 -92.70 -0.63 6.85 16 44 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 1.57 5.88 -2.38 -0.01 1.56 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.06 1.42 5.88 -2.38 -0.01 1.41 16 51 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -70.68 403.44 0.85 -69.83 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: -0.43 Total: 41.68 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 7.00 Total: 21.03 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -7.37 Total: -117.81 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -0.36 Total: -60.08 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -70.68 0.85 -69.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493778464.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.684 kcal (2) G-P(sol) polarization free energy of solvation -70.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds