Wall clock time and date at job start Wed Apr 1 2020 01:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.50830 * 2 1 4 4 C 1.53039 * 109.49999 * 120.07918 * 2 1 3 5 5 N 1.46852 * 109.52336 * 179.11989 * 4 2 1 6 6 C 1.46900 * 111.00118 * 174.15791 * 5 4 2 7 7 C 1.50697 * 109.47237 * 293.61170 * 6 5 4 8 8 O 1.21294 * 119.99957 * 353.73088 * 7 6 5 9 9 N 1.34777 * 120.00218 * 173.72893 * 7 6 5 10 10 C 1.37099 * 120.00043 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99929 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99738 * 180.02562 * 10 9 7 13 13 N 1.31412 * 120.00132 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99888 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.47281 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47325 * 120.00225 * 14 12 10 17 17 H 1.48503 * 109.47321 * 240.00026 * 14 12 10 18 18 C 1.46845 * 111.19897 * 298.25829 * 5 4 2 19 19 C 1.53038 * 109.52423 * 61.74130 * 18 5 4 20 20 C 1.53119 * 109.50512 * 239.87697 * 2 1 3 21 21 H 1.08999 * 109.52582 * 302.37697 * 20 2 1 22 22 N 1.46509 * 109.52055 * 62.50530 * 20 2 1 23 23 C 1.34772 * 119.99730 * 204.99995 * 22 20 2 24 24 O 1.21515 * 120.00239 * 359.97438 * 23 22 20 25 25 O 1.34640 * 119.99847 * 179.97438 * 23 22 20 26 26 C 1.45199 * 117.00191 * 179.97438 * 25 23 22 27 27 C 1.52995 * 109.47047 * 59.99911 * 26 25 23 28 28 C 1.52994 * 109.47202 * 180.02562 * 26 25 23 29 29 C 1.52998 * 109.46920 * 300.00253 * 26 25 23 30 30 H 1.08996 * 109.47442 * 299.92160 * 1 2 3 31 31 H 1.09003 * 109.46911 * 59.92729 * 1 2 3 32 32 H 1.09007 * 109.46960 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46299 * 59.10718 * 4 2 1 34 34 H 1.09003 * 109.45395 * 299.12826 * 4 2 1 35 35 H 1.08996 * 109.46919 * 173.61386 * 6 5 4 36 36 H 1.08994 * 109.47139 * 53.61230 * 6 5 4 37 37 H 0.97002 * 119.99804 * 0.02562 * 9 7 6 38 38 H 0.96995 * 120.00108 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.46555 * 181.75400 * 18 5 4 40 40 H 1.09004 * 109.46392 * 301.72721 * 18 5 4 41 41 H 1.08998 * 109.50374 * 180.88473 * 19 18 5 42 42 H 1.09001 * 109.50604 * 60.76106 * 19 18 5 43 43 H 0.97001 * 119.99306 * 24.99499 * 22 20 2 44 44 H 1.09003 * 109.47069 * 60.00097 * 27 26 25 45 45 H 1.09000 * 109.47493 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.47527 * 300.00058 * 27 26 25 47 47 H 1.09000 * 109.47419 * 59.99601 * 28 26 25 48 48 H 1.09000 * 109.47052 * 180.02562 * 28 26 25 49 49 H 1.09003 * 109.46781 * 299.99821 * 28 26 25 50 50 H 1.09007 * 109.47477 * 59.99964 * 29 26 25 51 51 H 1.09001 * 109.47426 * 180.02562 * 29 26 25 52 52 H 1.09001 * 109.47259 * 299.99522 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0408 -0.7230 1.2483 5 7 3.5092 -0.7418 1.2383 6 6 4.0371 -1.3050 2.4880 7 6 3.7055 -0.3840 3.6337 8 8 3.1915 0.6930 3.4168 9 7 3.9799 -0.7569 4.8995 10 6 3.6787 0.0813 5.9417 11 1 3.2211 1.0402 5.7485 12 6 3.9622 -0.3031 7.2466 13 7 4.5195 -1.4697 7.4816 14 14 3.5511 0.8386 8.6667 15 1 2.9338 2.0822 8.1395 16 1 2.5980 0.1641 9.5843 17 1 4.7940 1.1771 9.4056 18 6 4.0229 -1.4730 0.0731 19 6 3.5712 -0.7724 -1.2104 20 6 2.0412 -0.7243 -1.2484 21 1 1.6443 -1.7393 -1.2689 22 7 1.6038 -0.0033 -2.4464 23 6 1.4768 -0.6574 -3.6178 24 8 1.7257 -1.8452 -3.6806 25 8 1.0743 0.0051 -4.7187 26 6 0.9604 -0.7630 -5.9456 27 6 -0.0558 -1.8898 -5.7493 28 6 0.4947 0.1528 -7.0792 29 6 2.3229 -1.3613 -6.3010 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5150 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6647 -1.7460 1.2550 34 1 1.6904 -0.2013 2.1390 35 1 5.1189 -1.4124 2.4097 36 1 3.5869 -2.2818 2.6651 37 1 4.3913 -1.6181 5.0729 38 1 4.7177 -1.7379 8.3924 39 1 5.1120 -1.4963 0.1101 40 1 3.6374 -2.4926 0.0852 41 1 3.9395 -1.3243 -2.0752 42 1 3.9678 0.2427 -1.2298 43 1 1.4054 0.9449 -2.3963 44 1 -1.0265 -1.4635 -5.4961 45 1 -0.1417 -2.4661 -6.6705 46 1 0.2764 -2.5422 -4.9418 47 1 1.2189 0.9553 -7.2189 48 1 0.4087 -0.4239 -8.0001 49 1 -0.4760 0.5794 -6.8261 50 1 2.6552 -2.0138 -5.4934 51 1 2.2376 -1.9376 -7.2223 52 1 3.0470 -0.5586 -6.4409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493778465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:31 Heat of formation + Delta-G solvation = -123.492176 kcal Electronic energy + Delta-G solvation = -30860.043019 eV Core-core repulsion = 26666.299827 eV Total energy + Delta-G solvation = -4193.743192 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01454 -39.55289 -38.10173 -37.04489 -35.15190 -34.30162 -33.82088 -32.69984 -31.35215 -31.07468 -27.71700 -27.65783 -27.34333 -26.46886 -24.72917 -23.42823 -21.99513 -21.54325 -20.47208 -19.70018 -19.14768 -18.18830 -17.83786 -16.92965 -16.31177 -16.05691 -15.80279 -15.24322 -14.97298 -14.79048 -14.68938 -14.49598 -14.11988 -13.84305 -13.79669 -13.53496 -13.44753 -13.14923 -12.79753 -12.75616 -12.49404 -12.23741 -12.18931 -12.17382 -12.04422 -11.81507 -11.74422 -11.57451 -11.49111 -11.40926 -11.11633 -11.02780 -10.88774 -10.71273 -10.58521 -10.34703 -10.32662 -10.21921 -10.16083 -9.47714 -9.20402 -8.43134 -7.96328 -7.84873 -6.40880 -3.81543 2.01239 2.71872 3.16605 3.27209 3.34135 3.92086 3.94035 3.98686 4.24061 4.41940 4.46138 4.59115 4.60756 4.77135 4.95695 5.11023 5.15262 5.21114 5.23057 5.25833 5.27150 5.37953 5.38189 5.43128 5.48498 5.53210 5.56318 5.65663 5.67607 5.68530 5.74994 5.81447 5.86323 5.94320 5.98856 6.00552 6.04775 6.13018 6.16494 6.22348 6.29875 6.37481 6.43866 6.44797 7.26898 7.32983 7.41217 7.56168 8.07792 8.26221 8.63085 9.19335 9.56074 10.07812 10.76972 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033457 B = 0.001926 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.700378 B =14534.387505 C =14919.273404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.089 0.911 4 C 0.065 3.935 5 N -0.516 5.516 6 C 0.046 3.954 7 C 0.444 3.556 8 O -0.576 6.576 9 N -0.566 5.566 10 C -0.297 4.297 11 H 0.104 0.896 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.058 3.942 19 C -0.125 4.125 20 C 0.167 3.833 21 H 0.088 0.912 22 N -0.702 5.702 23 C 0.650 3.350 24 O -0.570 6.570 25 O -0.367 6.367 26 C 0.136 3.864 27 C -0.183 4.183 28 C -0.141 4.141 29 C -0.183 4.183 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.026 0.974 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.078 0.922 40 H 0.032 0.968 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.405 0.595 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.068 0.932 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 -1.243 -25.618 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.107 0.893 4 C -0.063 4.063 5 N -0.241 5.241 6 C -0.085 4.085 7 C 0.229 3.771 8 O -0.460 6.460 9 N -0.203 5.203 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.070 4.070 19 C -0.164 4.164 20 C 0.063 3.937 21 H 0.106 0.894 22 N -0.360 5.360 23 C 0.403 3.597 24 O -0.459 6.459 25 O -0.282 6.282 26 C 0.100 3.900 27 C -0.240 4.240 28 C -0.198 4.198 29 C -0.240 4.240 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.240 0.760 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.087 0.913 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.326 -0.719 -25.733 26.509 hybrid contribution -0.155 -0.551 0.922 1.085 sum -6.481 -1.270 -24.812 25.676 Atomic orbital electron populations 1.21792 0.94570 1.01949 1.02037 1.21425 0.95611 1.01185 0.92877 0.89295 1.22183 0.87026 0.98286 0.98822 1.61506 1.08228 1.53470 1.00856 1.21844 1.00834 0.95983 0.89831 1.19756 0.85190 0.88611 0.83544 1.90501 1.47611 1.23818 1.84092 1.41894 1.54642 1.19221 1.04502 1.19741 1.37619 1.00873 0.84444 0.87864 1.25258 0.97126 0.96859 0.98777 1.69620 1.42845 1.20097 1.21781 0.85814 0.78063 0.80017 0.80524 1.19235 1.20824 1.20783 1.22052 1.00269 0.94823 0.89898 1.21981 0.94875 1.02275 0.97277 1.21174 0.94418 0.96381 0.81681 0.89423 1.44907 1.71110 1.13523 1.06420 1.18119 0.76532 0.83942 0.81128 1.90892 1.55654 1.14258 1.85110 1.86303 1.80992 1.43206 1.17710 1.22035 0.96394 0.91143 0.80460 1.22514 0.98485 0.98846 1.04199 1.21859 1.02284 0.99716 0.95930 1.22514 0.95811 1.02125 1.03592 0.91765 0.92671 0.92806 0.95576 0.87800 0.89205 0.93512 0.77517 0.91961 0.90379 0.94944 0.91121 0.90596 0.76009 0.92239 0.91251 0.89300 0.91478 0.90213 0.91507 0.89288 0.91259 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.06 37.16 0.34 -1.27 16 2 C -0.09 -1.14 2.45 -90.54 -0.22 -1.36 16 3 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.07 1.01 4.40 -3.83 -0.02 0.99 16 5 N -0.52 -8.34 4.35 -236.12 -1.03 -9.37 16 6 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 7 C 0.44 10.25 7.31 -10.99 -0.08 10.17 16 8 O -0.58 -15.11 14.29 5.55 0.08 -15.03 16 9 N -0.57 -14.15 5.29 -10.96 -0.06 -14.21 16 10 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 13 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 14 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 18 C 0.06 0.76 5.46 -3.83 -0.02 0.74 16 19 C -0.13 -1.50 5.67 -26.65 -0.15 -1.65 16 20 C 0.17 1.95 1.94 -67.80 -0.13 1.82 16 21 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 22 N -0.70 -7.41 4.46 -58.60 -0.26 -7.67 16 23 C 0.65 7.76 8.03 54.05 0.43 8.20 16 24 O -0.57 -7.95 11.54 -19.28 -0.22 -8.17 16 25 O -0.37 -3.95 9.94 -40.32 -0.40 -4.36 16 26 C 0.14 1.21 1.13 -90.63 -0.10 1.10 16 27 C -0.18 -1.60 8.37 37.15 0.31 -1.28 16 28 C -0.14 -0.88 8.85 37.15 0.33 -0.55 16 29 C -0.18 -1.59 8.37 37.16 0.31 -1.28 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.53 7.63 -51.93 -0.40 0.13 16 32 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 1.96 6.06 -51.93 -0.31 1.65 16 35 H 0.09 1.44 7.98 -51.93 -0.41 1.02 16 36 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.08 0.95 8.01 -51.93 -0.42 0.53 16 40 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.41 3.60 8.65 -40.82 -0.35 3.25 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 51 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 408.58 15.07 6.16 6.16 Total: -1.00 -31.32 408.58 -8.37 -39.69 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -9.07 Total: 12.22 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 0.73 Total: 8.54 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.62 Total: -54.97 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.54 Total: -27.56 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.32 -8.37 -39.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493778465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.802 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds