Wall clock time and date at job start Wed Apr 1 2020 01:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.53758 * 2 1 4 4 C 1.53041 * 109.50439 * 239.89646 * 2 1 3 5 5 N 1.46846 * 109.52305 * 180.88347 * 4 2 1 6 6 C 1.46903 * 110.99963 * 185.83949 * 5 4 2 7 7 C 1.50699 * 109.46994 * 301.83578 * 6 5 4 8 8 O 1.21293 * 119.99999 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99772 * 179.97438 * 7 6 5 10 10 C 1.37092 * 120.00123 * 179.97438 * 9 7 6 11 11 H 1.08002 * 120.00160 * 0.02562 * 10 9 7 12 12 C 1.38951 * 120.00419 * 180.02562 * 10 9 7 13 13 N 1.31414 * 119.99798 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00536 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47339 * 180.02562 * 14 12 10 16 16 H 1.48493 * 109.47239 * 300.00506 * 14 12 10 17 17 H 1.48504 * 109.46636 * 60.00065 * 14 12 10 18 18 C 1.46843 * 111.19872 * 61.74155 * 5 4 2 19 19 C 1.53036 * 109.52784 * 298.25998 * 18 5 4 20 20 C 1.53117 * 109.27835 * 59.17848 * 19 18 5 21 21 H 1.08994 * 109.52620 * 62.31187 * 20 19 18 22 22 N 1.46502 * 109.52470 * 182.44600 * 20 19 18 23 23 C 1.34780 * 119.99792 * 275.00067 * 22 20 19 24 24 O 1.21513 * 119.99773 * 359.97438 * 23 22 20 25 25 O 1.34628 * 119.99794 * 179.97438 * 23 22 20 26 26 C 1.45207 * 116.99939 * 179.97438 * 25 23 22 27 27 C 1.53005 * 109.46870 * 60.00040 * 26 25 23 28 28 C 1.52997 * 109.47418 * 179.97438 * 26 25 23 29 29 C 1.52996 * 109.46934 * 300.00220 * 26 25 23 30 30 H 1.09000 * 109.47685 * 299.90581 * 1 2 3 31 31 H 1.09005 * 109.47097 * 59.90385 * 1 2 3 32 32 H 1.09001 * 109.47379 * 179.90510 * 1 2 3 33 33 H 1.08993 * 109.46112 * 60.86324 * 4 2 1 34 34 H 1.09005 * 109.46350 * 300.89986 * 4 2 1 35 35 H 1.08997 * 109.46851 * 181.83339 * 6 5 4 36 36 H 1.09007 * 109.46610 * 61.83683 * 6 5 4 37 37 H 0.97000 * 119.99732 * 0.02562 * 9 7 6 38 38 H 0.96996 * 120.00340 * 179.97438 * 13 12 10 39 39 H 1.09003 * 109.46214 * 58.27621 * 18 5 4 40 40 H 1.08998 * 109.46261 * 178.25197 * 18 5 4 41 41 H 1.08998 * 109.50423 * 179.11984 * 19 18 5 42 42 H 1.09002 * 109.49845 * 299.23677 * 19 18 5 43 43 H 0.97003 * 120.00389 * 94.99629 * 22 20 19 44 44 H 1.09001 * 109.47060 * 60.00247 * 27 26 25 45 45 H 1.08997 * 109.46979 * 179.97438 * 27 26 25 46 46 H 1.08995 * 109.46955 * 300.00195 * 27 26 25 47 47 H 1.09002 * 109.46890 * 60.00147 * 28 26 25 48 48 H 1.08997 * 109.47425 * 180.02562 * 28 26 25 49 49 H 1.09007 * 109.46931 * 300.00442 * 28 26 25 50 50 H 1.09004 * 109.47338 * 60.00135 * 29 26 25 51 51 H 1.09002 * 109.46537 * 179.97438 * 29 26 25 52 52 H 1.08993 * 109.47207 * 299.99591 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 3.5092 -0.7423 -1.2378 6 6 4.0372 -1.3061 -2.4873 7 6 3.5010 -2.7020 -2.6745 8 8 2.7522 -3.1799 -1.8486 9 7 3.8527 -3.4189 -3.7603 10 6 3.3653 -4.6890 -3.9304 11 1 2.6992 -5.1149 -3.1946 12 6 3.7282 -5.4284 -5.0495 13 7 4.5391 -4.9104 -5.9446 14 14 3.0647 -7.1591 -5.2810 15 1 3.5988 -7.7292 -6.5438 16 1 3.4865 -8.0080 -4.1379 17 1 1.5817 -7.1162 -5.3448 18 6 4.0228 -1.4731 -0.0722 19 6 3.5710 -0.7720 1.2109 20 6 2.0411 -0.7239 1.2488 21 1 1.6451 -1.7391 1.2702 22 7 1.6035 -0.0023 2.4464 23 6 1.4826 -0.6546 3.6196 24 8 1.7362 -1.8413 3.6839 25 8 1.0810 0.0086 4.7202 26 6 0.9727 -0.7578 5.9488 27 6 2.3381 -1.3512 6.3018 28 6 0.5071 0.1585 7.0822 29 6 -0.0405 -1.8880 5.7572 30 1 -0.3634 0.5123 0.8908 31 1 -0.3633 0.5153 -0.8892 32 1 -0.3634 -1.0277 -0.0017 33 1 1.6905 -0.2025 -2.1389 34 1 1.6647 -1.7466 -1.2543 35 1 5.1257 -1.3383 -2.4399 36 1 3.7283 -0.6826 -3.3263 37 1 4.4512 -3.0366 -4.4209 38 1 4.7927 -5.4266 -6.7256 39 1 3.6373 -2.4926 -0.0841 40 1 5.1119 -1.4962 -0.1091 41 1 3.9393 -1.3235 2.0759 42 1 3.9677 0.2431 1.2299 43 1 1.4008 0.9449 2.3950 44 1 3.0599 -0.5460 6.4383 45 1 2.2569 -1.9261 7.2242 46 1 2.6702 -2.0039 5.4945 47 1 -0.4655 0.5816 6.8309 48 1 0.4262 -0.4167 8.0045 49 1 1.2293 0.9635 7.2185 50 1 0.2916 -2.5408 4.9499 51 1 -0.1215 -2.4636 6.6793 52 1 -1.0132 -1.4653 5.5058 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493778467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:34 Heat of formation + Delta-G solvation = -122.201825 kcal Electronic energy + Delta-G solvation = -31366.172459 eV Core-core repulsion = 27172.485221 eV Total energy + Delta-G solvation = -4193.687238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90244 -39.65249 -38.11879 -36.83441 -35.01110 -34.23635 -33.75861 -32.57246 -31.41074 -31.00318 -27.63846 -27.56012 -27.27890 -26.28322 -24.70207 -23.29624 -21.87317 -21.47929 -20.34898 -19.62556 -19.21661 -18.14159 -17.83035 -16.80125 -16.19426 -16.03974 -15.75513 -15.02595 -14.96787 -14.69282 -14.54082 -14.51704 -14.19276 -13.79048 -13.69856 -13.50263 -13.38269 -13.02750 -12.72390 -12.68063 -12.40499 -12.10487 -12.08583 -12.04177 -11.91065 -11.75360 -11.61820 -11.48859 -11.47687 -11.18608 -11.08573 -10.79732 -10.65643 -10.54239 -10.47075 -10.46640 -10.27755 -10.21072 -10.02538 -9.47179 -9.20830 -9.06364 -8.00810 -7.40154 -6.46233 -3.87527 2.12046 2.84964 3.16227 3.23070 3.27485 3.81746 4.05791 4.14349 4.31583 4.50835 4.54587 4.69148 4.70349 4.95882 5.00562 5.13302 5.21702 5.22643 5.31232 5.36985 5.41792 5.46245 5.53274 5.58363 5.63919 5.64906 5.65971 5.74955 5.77636 5.87238 5.90049 6.00839 6.05974 6.10531 6.11489 6.16668 6.20029 6.21267 6.27052 6.29732 6.43889 6.52644 6.61443 6.78646 7.35272 7.43995 7.47386 7.50379 8.00200 8.39259 8.55030 9.12196 9.48329 9.98971 10.70136 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.002336 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.157066 B =11982.198942 C =12672.282921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.077 0.923 4 C 0.041 3.959 5 N -0.515 5.515 6 C 0.042 3.958 7 C 0.405 3.595 8 O -0.592 6.592 9 N -0.556 5.556 10 C -0.302 4.302 11 H 0.102 0.898 12 C 0.024 3.976 13 N -0.898 5.898 14 Si 0.930 3.070 15 H -0.284 1.284 16 H -0.273 1.273 17 H -0.273 1.273 18 C 0.045 3.955 19 C -0.121 4.121 20 C 0.168 3.832 21 H 0.093 0.907 22 N -0.703 5.703 23 C 0.647 3.353 24 O -0.564 6.564 25 O -0.369 6.369 26 C 0.137 3.863 27 C -0.184 4.184 28 C -0.140 4.140 29 C -0.184 4.184 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.393 0.607 38 H 0.273 0.727 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.402 0.598 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.065 0.935 50 H 0.089 0.911 51 H 0.068 0.932 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.209 13.660 18.698 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.087 4.087 5 N -0.238 5.238 6 C -0.090 4.090 7 C 0.191 3.809 8 O -0.480 6.480 9 N -0.191 5.191 10 C -0.432 4.432 11 H 0.120 0.880 12 C -0.178 4.178 13 N -0.539 5.539 14 Si 0.757 3.243 15 H -0.209 1.209 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.083 4.083 19 C -0.160 4.160 20 C 0.065 3.935 21 H 0.111 0.889 22 N -0.361 5.361 23 C 0.400 3.600 24 O -0.453 6.453 25 O -0.284 6.284 26 C 0.100 3.900 27 C -0.241 4.241 28 C -0.197 4.197 29 C -0.241 4.241 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.226 0.774 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.236 0.764 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.084 0.916 50 H 0.108 0.892 51 H 0.087 0.913 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.349 13.136 19.210 23.879 hybrid contribution -0.187 -1.065 -0.711 1.294 sum -5.536 12.071 18.499 22.773 Atomic orbital electron populations 1.21789 0.94735 1.02396 1.01408 1.21406 0.95525 1.00049 0.93915 0.90481 1.22424 0.87978 1.02587 0.95754 1.62458 1.08477 1.51354 1.01530 1.22028 1.00520 0.93143 0.93309 1.21116 0.86751 0.88801 0.84270 1.90398 1.40637 1.72343 1.44599 1.42051 1.42363 1.14397 1.20255 1.19663 1.26615 0.90123 1.06808 0.88011 1.25286 0.96692 1.00302 0.95533 1.69600 1.34211 1.38534 1.11563 0.85926 0.79146 0.81646 0.77577 1.20917 1.19876 1.19880 1.22158 0.99323 0.98059 0.88781 1.21944 0.94739 1.01369 0.97958 1.21145 0.94538 0.96692 0.81130 0.88870 1.44938 1.71266 1.13420 1.06464 1.18136 0.76707 0.83996 0.81125 1.90924 1.55117 1.14255 1.85016 1.86283 1.81151 1.43334 1.17661 1.22024 0.96422 0.91155 0.80412 1.22517 0.95755 1.02139 1.03677 1.21854 1.02192 0.99681 0.95983 1.22519 0.98466 0.98846 1.04287 0.92853 0.92314 0.92314 0.91366 0.89234 0.89355 0.89275 0.77375 0.91718 0.91100 0.91403 0.91387 0.91529 0.76384 0.92273 0.91272 0.89191 0.91558 0.90242 0.91558 0.89186 0.91263 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.06 37.15 0.34 -1.31 16 2 C -0.09 -1.12 2.44 -90.53 -0.22 -1.34 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 4 C 0.04 0.64 4.26 -3.83 -0.02 0.63 16 5 N -0.52 -8.26 4.86 -236.11 -1.15 -9.41 16 6 C 0.04 0.72 5.86 -4.97 -0.03 0.69 16 7 C 0.40 9.08 7.20 -10.99 -0.08 9.00 16 8 O -0.59 -14.86 11.20 5.55 0.06 -14.80 16 9 N -0.56 -13.70 5.29 -10.96 -0.06 -13.76 16 10 C -0.30 -8.28 9.68 -14.94 -0.14 -8.42 16 11 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 12 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 13 N -0.90 -24.15 13.05 55.50 0.72 -23.42 16 14 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 C 0.05 0.74 5.09 -3.84 -0.02 0.72 16 19 C -0.12 -1.69 5.67 -26.65 -0.15 -1.84 16 20 C 0.17 2.28 1.94 -67.80 -0.13 2.14 16 21 H 0.09 1.57 7.58 -51.93 -0.39 1.17 16 22 N -0.70 -8.21 4.46 -58.61 -0.26 -8.48 16 23 C 0.65 8.71 8.02 54.06 0.43 9.15 16 24 O -0.56 -9.14 11.55 -19.28 -0.22 -9.37 16 25 O -0.37 -4.36 9.94 -40.29 -0.40 -4.76 16 26 C 0.14 1.36 1.13 -90.62 -0.10 1.26 16 27 C -0.18 -1.84 8.37 37.16 0.31 -1.52 16 28 C -0.14 -0.98 8.85 37.16 0.33 -0.65 16 29 C -0.18 -1.86 8.37 37.16 0.31 -1.55 16 30 H 0.05 0.53 7.62 -51.93 -0.40 0.13 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 34 H 0.09 1.76 5.36 -51.93 -0.28 1.48 16 35 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 36 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.07 1.42 6.00 -51.93 -0.31 1.11 16 40 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.40 3.72 8.63 -40.82 -0.35 3.37 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 50 H 0.09 1.17 5.88 -51.93 -0.31 0.86 16 51 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 403.08 15.07 6.07 6.07 Total: -1.00 -30.47 403.08 -8.45 -38.92 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -8.93 Total: 15.59 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 0.73 Total: 7.48 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.74 Total: -55.07 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.56 Total: -28.92 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.47 -8.45 -38.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493778467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.283 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds