Wall clock time and date at job start Wed Apr 1 2020 01:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.53758 * 2 1 4 4 C 1.53041 * 109.50439 * 239.89646 * 2 1 3 5 5 N 1.46846 * 109.52305 * 180.88347 * 4 2 1 6 6 C 1.46903 * 110.99963 * 185.83949 * 5 4 2 7 7 C 1.50699 * 109.46994 * 301.83578 * 6 5 4 8 8 O 1.21293 * 119.99999 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99772 * 179.97438 * 7 6 5 10 10 C 1.37092 * 120.00123 * 179.97438 * 9 7 6 11 11 H 1.08002 * 120.00160 * 0.02562 * 10 9 7 12 12 C 1.38951 * 120.00419 * 180.02562 * 10 9 7 13 13 N 1.31414 * 119.99798 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00536 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47339 * 180.02562 * 14 12 10 16 16 H 1.48493 * 109.47239 * 300.00506 * 14 12 10 17 17 H 1.48504 * 109.46636 * 60.00065 * 14 12 10 18 18 C 1.46843 * 111.19872 * 61.74155 * 5 4 2 19 19 C 1.53036 * 109.52784 * 298.25998 * 18 5 4 20 20 C 1.53117 * 109.27835 * 59.17848 * 19 18 5 21 21 H 1.08994 * 109.52620 * 62.31187 * 20 19 18 22 22 N 1.46502 * 109.52470 * 182.44600 * 20 19 18 23 23 C 1.34780 * 119.99792 * 275.00067 * 22 20 19 24 24 O 1.21513 * 119.99773 * 359.97438 * 23 22 20 25 25 O 1.34628 * 119.99794 * 179.97438 * 23 22 20 26 26 C 1.45207 * 116.99939 * 179.97438 * 25 23 22 27 27 C 1.53005 * 109.46870 * 60.00040 * 26 25 23 28 28 C 1.52997 * 109.47418 * 179.97438 * 26 25 23 29 29 C 1.52996 * 109.46934 * 300.00220 * 26 25 23 30 30 H 1.09000 * 109.47685 * 299.90581 * 1 2 3 31 31 H 1.09005 * 109.47097 * 59.90385 * 1 2 3 32 32 H 1.09001 * 109.47379 * 179.90510 * 1 2 3 33 33 H 1.08993 * 109.46112 * 60.86324 * 4 2 1 34 34 H 1.09005 * 109.46350 * 300.89986 * 4 2 1 35 35 H 1.08997 * 109.46851 * 181.83339 * 6 5 4 36 36 H 1.09007 * 109.46610 * 61.83683 * 6 5 4 37 37 H 0.97000 * 119.99732 * 0.02562 * 9 7 6 38 38 H 0.96996 * 120.00340 * 179.97438 * 13 12 10 39 39 H 1.09003 * 109.46214 * 58.27621 * 18 5 4 40 40 H 1.08998 * 109.46261 * 178.25197 * 18 5 4 41 41 H 1.08998 * 109.50423 * 179.11984 * 19 18 5 42 42 H 1.09002 * 109.49845 * 299.23677 * 19 18 5 43 43 H 0.97003 * 120.00389 * 94.99629 * 22 20 19 44 44 H 1.09001 * 109.47060 * 60.00247 * 27 26 25 45 45 H 1.08997 * 109.46979 * 179.97438 * 27 26 25 46 46 H 1.08995 * 109.46955 * 300.00195 * 27 26 25 47 47 H 1.09002 * 109.46890 * 60.00147 * 28 26 25 48 48 H 1.08997 * 109.47425 * 180.02562 * 28 26 25 49 49 H 1.09007 * 109.46931 * 300.00442 * 28 26 25 50 50 H 1.09004 * 109.47338 * 60.00135 * 29 26 25 51 51 H 1.09002 * 109.46537 * 179.97438 * 29 26 25 52 52 H 1.08993 * 109.47207 * 299.99591 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 3.5092 -0.7423 -1.2378 6 6 4.0372 -1.3061 -2.4873 7 6 3.5010 -2.7020 -2.6745 8 8 2.7522 -3.1799 -1.8486 9 7 3.8527 -3.4189 -3.7603 10 6 3.3653 -4.6890 -3.9304 11 1 2.6992 -5.1149 -3.1946 12 6 3.7282 -5.4284 -5.0495 13 7 4.5391 -4.9104 -5.9446 14 14 3.0647 -7.1591 -5.2810 15 1 3.5988 -7.7292 -6.5438 16 1 3.4865 -8.0080 -4.1379 17 1 1.5817 -7.1162 -5.3448 18 6 4.0228 -1.4731 -0.0722 19 6 3.5710 -0.7720 1.2109 20 6 2.0411 -0.7239 1.2488 21 1 1.6451 -1.7391 1.2702 22 7 1.6035 -0.0023 2.4464 23 6 1.4826 -0.6546 3.6196 24 8 1.7362 -1.8413 3.6839 25 8 1.0810 0.0086 4.7202 26 6 0.9727 -0.7578 5.9488 27 6 2.3381 -1.3512 6.3018 28 6 0.5071 0.1585 7.0822 29 6 -0.0405 -1.8880 5.7572 30 1 -0.3634 0.5123 0.8908 31 1 -0.3633 0.5153 -0.8892 32 1 -0.3634 -1.0277 -0.0017 33 1 1.6905 -0.2025 -2.1389 34 1 1.6647 -1.7466 -1.2543 35 1 5.1257 -1.3383 -2.4399 36 1 3.7283 -0.6826 -3.3263 37 1 4.4512 -3.0366 -4.4209 38 1 4.7927 -5.4266 -6.7256 39 1 3.6373 -2.4926 -0.0841 40 1 5.1119 -1.4962 -0.1091 41 1 3.9393 -1.3235 2.0759 42 1 3.9677 0.2431 1.2299 43 1 1.4008 0.9449 2.3950 44 1 3.0599 -0.5460 6.4383 45 1 2.2569 -1.9261 7.2242 46 1 2.6702 -2.0039 5.4945 47 1 -0.4655 0.5816 6.8309 48 1 0.4262 -0.4167 8.0045 49 1 1.2293 0.9635 7.2185 50 1 0.2916 -2.5408 4.9499 51 1 -0.1215 -2.4636 6.6793 52 1 -1.0132 -1.4653 5.5058 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493778467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:33 Heat of formation + Delta-G solvation = -144.411366 kcal Electronic energy + Delta-G solvation = -31367.135537 eV Core-core repulsion = 27172.485221 eV Total energy + Delta-G solvation = -4194.650316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93443 -41.06328 -39.54396 -38.01590 -36.40421 -35.68326 -35.02917 -33.67149 -33.31459 -32.32422 -28.78538 -28.36472 -28.27733 -27.46266 -26.46197 -24.57840 -22.92481 -22.73397 -21.45362 -21.03873 -20.65270 -19.84638 -19.10518 -17.84315 -17.73615 -17.17442 -16.94357 -16.52813 -16.31710 -16.13415 -15.82921 -15.63272 -15.43142 -15.36510 -15.06003 -14.77348 -14.49085 -14.21943 -13.80536 -13.62407 -13.40722 -13.31546 -13.22215 -13.15186 -12.96169 -12.89730 -12.84878 -12.75760 -12.55668 -12.46691 -12.40008 -12.29721 -12.15904 -12.06176 -11.83394 -11.76262 -11.44463 -11.37105 -11.32341 -11.07171 -10.94422 -10.15379 -9.99755 -9.00928 -8.47257 -5.96894 1.15699 1.35553 1.38291 1.48716 1.78715 2.01584 2.27261 2.96364 3.14898 3.18565 3.28224 3.59012 3.76773 3.79359 3.82701 3.95954 4.01633 4.17994 4.39114 4.41827 4.42391 4.46095 4.56674 4.58157 4.61403 4.68934 4.74011 4.75421 4.76885 4.81904 4.84516 4.89376 4.92924 4.95244 5.02410 5.07963 5.12423 5.22539 5.27731 5.28826 5.29840 5.36782 5.39373 5.52693 5.60455 5.89302 6.05251 6.10185 6.45932 6.58300 7.10957 7.39225 7.54766 8.10449 8.67706 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.002336 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.157066 B =11982.198942 C =12672.282921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 H 0.107 0.893 4 C 0.041 3.959 5 N -0.498 5.498 6 C 0.049 3.951 7 C 0.406 3.594 8 O -0.621 6.621 9 N -0.570 5.570 10 C -0.333 4.333 11 H 0.075 0.925 12 C -0.012 4.012 13 N -0.917 5.917 14 Si 0.989 3.011 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.273 1.273 18 C 0.048 3.952 19 C -0.110 4.110 20 C 0.176 3.824 21 H 0.051 0.949 22 N -0.688 5.688 23 C 0.645 3.355 24 O -0.597 6.597 25 O -0.366 6.366 26 C 0.125 3.875 27 C -0.180 4.180 28 C -0.133 4.133 29 C -0.181 4.181 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.396 0.604 38 H 0.278 0.722 39 H 0.025 0.975 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.418 0.582 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.101 0.899 49 H 0.072 0.928 50 H 0.055 0.945 51 H 0.090 0.910 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 16.170 19.718 26.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.097 4.097 3 H 0.125 0.875 4 C -0.088 4.088 5 N -0.220 5.220 6 C -0.083 4.083 7 C 0.193 3.807 8 O -0.509 6.509 9 N -0.206 5.206 10 C -0.463 4.463 11 H 0.093 0.907 12 C -0.212 4.212 13 N -0.558 5.558 14 Si 0.813 3.187 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.198 1.198 18 C -0.081 4.081 19 C -0.149 4.149 20 C 0.072 3.928 21 H 0.069 0.931 22 N -0.348 5.348 23 C 0.398 3.602 24 O -0.488 6.488 25 O -0.280 6.280 26 C 0.089 3.911 27 C -0.238 4.238 28 C -0.190 4.190 29 C -0.238 4.238 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.256 0.744 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.119 0.881 49 H 0.091 0.909 50 H 0.074 0.926 51 H 0.108 0.892 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.505 15.696 20.242 26.199 hybrid contribution -0.168 -1.833 -0.920 2.058 sum -5.673 13.863 19.322 24.448 Atomic orbital electron populations 1.21765 0.93704 1.01318 1.03116 1.21331 0.96292 1.00624 0.91415 0.87528 1.22395 0.87648 1.00661 0.98061 1.62577 1.08599 1.49926 1.00894 1.22159 1.01652 0.89682 0.94758 1.22232 0.85280 0.90436 0.82746 1.90428 1.41559 1.73624 1.45300 1.42118 1.43198 1.14018 1.21297 1.19571 1.27637 0.91902 1.07157 0.90688 1.25995 0.96735 1.03543 0.94897 1.69655 1.34605 1.39709 1.11795 0.85054 0.78488 0.77372 0.77830 1.19315 1.20036 1.19798 1.22107 0.99821 0.96006 0.90170 1.21836 0.94916 1.02113 0.96073 1.20863 0.94235 0.95149 0.82505 0.93077 1.44683 1.70726 1.13966 1.05404 1.18310 0.76422 0.83663 0.81806 1.90931 1.56382 1.15893 1.85575 1.86299 1.80699 1.43318 1.17712 1.22397 0.96342 0.91897 0.80473 1.22473 0.95970 1.01962 1.03354 1.21871 1.02429 0.99477 0.95252 1.22479 0.98589 0.98713 1.04059 0.90902 0.90808 0.94817 0.90174 0.93675 0.87176 0.86700 0.76954 0.91268 0.95661 0.90300 0.92568 0.88981 0.74449 0.91659 0.89213 0.92503 0.91044 0.88083 0.90924 0.92626 0.89165 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.06 71.98 0.65 -2.37 16 2 C -0.08 -1.83 2.44 -10.74 -0.03 -1.86 16 3 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 4 C 0.04 1.27 4.26 86.33 0.37 1.64 16 5 N -0.50 -15.42 4.86 -900.92 -4.38 -19.80 16 6 C 0.05 1.64 5.86 85.56 0.50 2.14 16 7 C 0.41 18.69 7.20 87.66 0.63 19.32 16 8 O -0.62 -32.89 11.20 -3.07 -0.03 -32.92 16 9 N -0.57 -28.88 5.29 -306.99 -1.62 -30.50 16 10 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 11 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 12 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 13 N -0.92 -49.47 13.05 21.66 0.28 -49.18 16 14 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 15 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 C 0.05 1.57 5.09 86.33 0.44 2.01 16 19 C -0.11 -3.04 5.67 30.65 0.17 -2.87 16 20 C 0.18 4.80 1.94 45.07 0.09 4.89 16 21 H 0.05 1.85 7.58 -2.39 -0.02 1.83 16 22 N -0.69 -15.44 4.46 -569.74 -2.54 -17.98 16 23 C 0.64 17.40 8.02 129.79 1.04 18.44 16 24 O -0.60 -20.39 11.55 19.80 0.23 -20.17 16 25 O -0.37 -8.25 9.94 -55.37 -0.55 -8.80 16 26 C 0.13 2.35 1.13 -10.79 -0.01 2.33 16 27 C -0.18 -3.48 8.37 71.98 0.60 -2.88 16 28 C -0.13 -1.50 8.85 71.98 0.64 -0.86 16 29 C -0.18 -3.60 8.37 71.98 0.60 -3.00 16 30 H 0.07 1.28 7.62 -2.39 -0.02 1.26 16 31 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 2.30 8.12 -2.39 -0.02 2.28 16 34 H 0.05 1.86 5.36 -2.38 -0.01 1.85 16 35 H 0.11 3.25 8.06 -2.39 -0.02 3.23 16 36 H 0.12 3.31 8.14 -2.38 -0.02 3.29 16 37 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 38 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 39 H 0.03 1.07 6.00 -2.39 -0.01 1.06 16 40 H 0.08 2.39 8.06 -2.39 -0.02 2.37 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.42 6.69 8.63 -92.71 -0.80 5.89 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.06 1.51 5.88 -2.39 -0.01 1.49 16 47 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 50 H 0.05 1.52 5.88 -2.38 -0.01 1.50 16 51 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 52 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -70.54 403.08 -0.21 -70.75 By element: Atomic # 1 Polarization: 45.04 SS G_CDS: -0.61 Total: 44.43 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 6.98 Total: 18.69 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -8.26 Total: -117.47 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: -0.36 Total: -61.89 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -70.54 -0.21 -70.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493778467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.658 kcal (2) G-P(sol) polarization free energy of solvation -70.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds