Wall clock time and date at job start Wed Apr 1 2020 00:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.46167 * 2 1 4 4 C 1.54386 * 110.41135 * 237.58891 * 2 1 3 5 5 C 1.54258 * 105.05965 * 217.36678 * 4 2 1 6 6 H 1.08999 * 110.32334 * 118.89195 * 5 4 2 7 7 C 1.53000 * 110.32519 * 241.00312 * 5 4 2 8 8 N 1.46505 * 109.47228 * 185.00320 * 7 5 4 9 9 C 1.34773 * 120.00148 * 180.02562 * 8 7 5 10 10 O 1.21508 * 119.99706 * 359.97438 * 9 8 7 11 11 O 1.34633 * 120.00267 * 180.02562 * 9 8 7 12 12 C 1.45204 * 117.00137 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47049 * 59.99830 * 12 11 9 14 14 C 1.52997 * 109.46771 * 179.97438 * 12 11 9 15 15 C 1.52991 * 109.47024 * 299.99715 * 12 11 9 16 16 C 1.54386 * 105.06085 * 0.02562 * 5 4 2 17 17 N 1.48553 * 104.59301 * 23.85144 * 16 5 4 18 18 C 1.46902 * 110.99640 * 200.96190 * 17 16 5 19 19 C 1.50702 * 109.47027 * 285.41725 * 18 17 16 20 20 O 1.21293 * 120.00255 * 0.02562 * 19 18 17 21 21 N 1.34783 * 120.00004 * 180.02562 * 19 18 17 22 22 C 1.37092 * 119.99804 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00499 * 0.02562 * 22 21 19 24 24 C 1.38956 * 119.99671 * 179.72159 * 22 21 19 25 25 N 1.31414 * 120.00152 * 0.27554 * 24 22 21 26 26 Si 1.86803 * 119.99914 * 180.27723 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00084 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00035 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99834 * 26 24 22 30 30 H 1.08993 * 109.46784 * 299.03800 * 1 2 3 31 31 H 1.08996 * 109.46771 * 59.04265 * 1 2 3 32 32 H 1.09002 * 109.46515 * 179.03858 * 1 2 3 33 33 H 1.08996 * 110.32026 * 336.26272 * 4 2 1 34 34 H 1.08998 * 110.31988 * 98.37068 * 4 2 1 35 35 H 1.09004 * 109.46632 * 304.99947 * 7 5 4 36 36 H 1.08996 * 109.47286 * 65.00346 * 7 5 4 37 37 H 0.97005 * 119.99659 * 359.97438 * 8 7 5 38 38 H 1.09000 * 109.47307 * 59.99854 * 13 12 11 39 39 H 1.09000 * 109.46892 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46812 * 299.99748 * 13 12 11 41 41 H 1.08996 * 109.47682 * 60.00148 * 14 12 11 42 42 H 1.09006 * 109.46827 * 180.02562 * 14 12 11 43 43 H 1.09000 * 109.47597 * 299.99514 * 14 12 11 44 44 H 1.09003 * 109.47438 * 59.99884 * 15 12 11 45 45 H 1.08996 * 109.47260 * 180.02562 * 15 12 11 46 46 H 1.09010 * 109.47303 * 299.99890 * 15 12 11 47 47 H 1.08998 * 110.40723 * 265.06974 * 16 5 4 48 48 H 1.08995 * 110.41008 * 142.63284 * 16 5 4 49 49 H 1.09004 * 109.47131 * 165.41969 * 18 17 16 50 50 H 1.08994 * 109.47471 * 45.41719 * 18 17 16 51 51 H 0.97000 * 119.99715 * 359.97438 * 21 19 18 52 52 H 0.96991 * 119.99827 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0685 -0.7755 -1.2215 5 6 3.3178 -1.5188 -0.7055 6 1 3.1861 -2.5961 -0.8067 7 6 4.5616 -1.0622 -1.4705 8 7 5.7146 -1.8625 -1.0504 9 6 6.9267 -1.6353 -1.5941 10 8 7.0631 -0.7671 -2.4331 11 8 7.9861 -2.3712 -1.2084 12 6 9.2605 -2.0718 -1.8367 13 6 9.6424 -0.6185 -1.5483 14 6 10.3371 -3.0026 -1.2750 15 6 9.1450 -2.2784 -3.3481 16 6 3.4288 -1.1304 0.7846 17 7 2.0477 -0.7472 1.1753 18 6 2.0561 0.1000 2.3754 19 6 2.3494 -0.7474 3.5865 20 8 2.5338 -1.9398 3.4622 21 7 2.4068 -0.1804 4.8079 22 6 2.6742 -0.9513 5.9096 23 1 2.8392 -2.0129 5.7988 24 6 2.7391 -0.3657 7.1681 25 7 2.5389 0.9261 7.3029 26 14 3.1110 -1.4148 8.6683 27 1 4.5789 -1.4619 8.8878 28 1 2.4509 -0.8251 9.8607 29 1 2.5988 -2.7913 8.4490 30 1 -0.3633 0.4988 0.8984 31 1 -0.3633 0.5286 -0.8813 32 1 -0.3632 -1.0276 -0.0172 33 1 1.3236 -1.4879 -1.5760 34 1 2.3399 -0.0841 -2.0192 35 1 4.3987 -1.1934 -2.5403 36 1 4.7529 -0.0103 -1.2584 37 1 5.6057 -2.5554 -0.3803 38 1 9.7247 -0.4713 -0.4714 39 1 10.5988 -0.3937 -2.0203 40 1 8.8754 0.0448 -1.9482 41 1 10.0653 -4.0380 -1.4800 42 1 11.2939 -2.7776 -1.7463 43 1 10.4194 -2.8550 -0.1982 44 1 8.3780 -1.6151 -3.7480 45 1 10.1017 -2.0542 -3.8197 46 1 8.8729 -3.3138 -3.5536 47 1 4.1069 -0.2859 0.9077 48 1 3.7687 -1.9812 1.3749 49 1 1.0820 0.5751 2.4916 50 1 2.8243 0.8665 2.2737 51 1 2.2598 0.7732 4.9073 52 1 2.5839 1.3347 8.1814 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493916017.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:26 Heat of formation + Delta-G solvation = -121.458370 kcal Electronic energy + Delta-G solvation = -30553.022631 eV Core-core repulsion = 26359.367631 eV Total energy + Delta-G solvation = -4193.655000 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.90074 -39.58934 -37.92508 -37.33759 -35.17232 -34.20053 -33.88552 -32.11382 -31.31223 -31.14687 -27.64623 -27.59826 -27.36249 -26.18153 -24.99854 -23.77738 -22.28360 -20.70495 -20.35948 -19.76277 -19.15463 -18.20915 -17.84194 -16.89328 -16.41117 -16.03394 -15.79108 -15.37313 -14.96358 -14.84941 -14.59486 -14.55551 -14.30523 -13.93598 -13.67544 -13.58795 -13.44585 -13.02900 -12.75352 -12.71132 -12.40886 -12.21520 -12.13455 -12.11914 -11.95074 -11.83283 -11.65433 -11.59681 -11.52695 -11.37586 -11.13536 -10.94172 -10.88202 -10.74613 -10.56920 -10.52521 -10.38287 -10.20185 -10.18253 -9.47686 -9.30467 -8.50771 -8.00631 -7.92891 -6.39976 -3.80597 2.04742 2.73480 3.18593 3.27066 3.32951 3.91847 3.98326 3.98939 4.23286 4.48330 4.51291 4.53314 4.62430 4.67063 4.73118 5.04429 5.17254 5.20055 5.22418 5.26849 5.29841 5.31579 5.37828 5.44747 5.51687 5.52745 5.57595 5.61054 5.62347 5.68240 5.73049 5.74996 5.79955 5.88658 5.97162 5.98450 6.05329 6.07893 6.18940 6.21797 6.26416 6.33541 6.39124 6.40884 7.12939 7.24032 7.30459 7.56666 8.08148 8.26596 8.64112 9.20224 9.56882 10.08986 10.77984 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009144 B = 0.002621 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.487795 B =10678.751631 C =13123.570691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.053 3.947 3 H 0.050 0.950 4 C -0.107 4.107 5 C -0.107 4.107 6 H 0.090 0.910 7 C 0.147 3.853 8 N -0.708 5.708 9 C 0.650 3.350 10 O -0.573 6.573 11 O -0.364 6.364 12 C 0.136 3.864 13 C -0.184 4.184 14 C -0.142 4.142 15 C -0.183 4.183 16 C 0.043 3.957 17 N -0.478 5.478 18 C 0.034 3.966 19 C 0.446 3.554 20 O -0.577 6.577 21 N -0.567 5.567 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.929 3.071 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.410 0.590 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.040 0.960 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.049 0.951 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.856 -1.695 -20.687 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.056 4.056 3 H 0.068 0.932 4 C -0.146 4.146 5 C -0.126 4.126 6 H 0.108 0.892 7 C 0.025 3.975 8 N -0.368 5.368 9 C 0.403 3.597 10 O -0.463 6.463 11 O -0.279 6.279 12 C 0.099 3.901 13 C -0.241 4.241 14 C -0.199 4.199 15 C -0.240 4.240 16 C -0.085 4.085 17 N -0.202 5.202 18 C -0.098 4.098 19 C 0.231 3.769 20 O -0.460 6.460 21 N -0.204 5.204 22 C -0.426 4.426 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.756 3.244 27 H -0.205 1.205 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.245 0.755 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.059 0.941 48 H 0.114 0.886 49 H 0.107 0.893 50 H 0.067 0.933 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.789 -2.426 -20.877 22.414 hybrid contribution 0.605 0.724 1.136 1.477 sum 8.394 -1.702 -19.741 21.519 Atomic orbital electron populations 1.21708 0.93797 1.02608 1.01238 1.22708 0.96334 0.95815 0.90728 0.93214 1.22307 0.96247 0.99020 0.97004 1.22202 0.93370 1.01724 0.95346 0.89191 1.21522 0.82405 0.94825 0.98798 1.44798 1.05667 1.40938 1.45358 1.18080 0.81367 0.80095 0.80112 1.90883 1.84773 1.35322 1.35278 1.86324 1.17513 1.59236 1.64830 1.22056 0.79223 0.96071 0.92708 1.22522 1.03295 0.95783 1.02535 1.21867 0.96418 0.99351 1.02244 1.22511 1.04053 1.03048 0.94363 1.23216 0.90144 1.01389 0.93784 1.65109 1.18129 1.35958 1.01052 1.22066 1.01847 0.94573 0.91287 1.19710 0.84479 0.88731 0.83931 1.90501 1.54589 1.15350 1.85602 1.41869 1.62415 1.10869 1.05230 1.19682 1.44738 0.93978 0.84250 0.87965 1.25253 0.97550 0.96056 0.99151 1.69611 1.50014 1.09872 1.24977 0.85872 0.78458 0.79766 0.80284 1.20462 1.20950 1.19409 0.92553 0.92590 0.91666 0.90318 0.91055 0.91005 0.91176 0.75495 0.92019 0.91212 0.89392 0.91459 0.90197 0.91311 0.89396 0.91221 0.92222 0.94145 0.88581 0.89335 0.93302 0.77566 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.34 37.16 0.35 -1.17 16 2 C 0.05 0.64 2.87 -66.05 -0.19 0.45 16 3 H 0.05 0.59 8.00 -51.93 -0.42 0.17 16 4 C -0.11 -1.07 6.20 -25.35 -0.16 -1.22 16 5 C -0.11 -1.16 3.09 -89.23 -0.28 -1.44 16 6 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 7 C 0.15 1.54 4.80 -4.04 -0.02 1.52 16 8 N -0.71 -8.00 5.44 -65.28 -0.35 -8.35 16 9 C 0.65 8.43 8.06 54.05 0.44 8.86 16 10 O -0.57 -8.34 11.88 -19.28 -0.23 -8.56 16 11 O -0.36 -4.46 9.94 -40.31 -0.40 -4.86 16 12 C 0.14 1.36 1.13 -90.63 -0.10 1.26 16 13 C -0.18 -1.84 8.37 37.16 0.31 -1.53 16 14 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 15 C -0.18 -1.69 8.37 37.15 0.31 -1.38 16 16 C 0.04 0.63 5.28 -2.18 -0.01 0.61 16 17 N -0.48 -7.67 4.66 -223.55 -1.04 -8.71 16 18 C 0.03 0.61 5.27 -4.97 -0.03 0.58 16 19 C 0.45 10.51 7.63 -10.98 -0.08 10.42 16 20 O -0.58 -15.42 14.80 5.55 0.08 -15.34 16 21 N -0.57 -14.41 5.29 -10.96 -0.06 -14.47 16 22 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 25 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 26 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 H 0.06 0.67 7.31 -51.93 -0.38 0.29 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 33 H 0.08 0.74 7.84 -51.93 -0.41 0.33 16 34 H 0.07 0.59 7.71 -51.93 -0.40 0.19 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.79 7.98 -51.93 -0.41 0.38 16 37 H 0.41 4.27 8.52 -40.82 -0.35 3.92 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.09 1.00 5.88 -51.93 -0.31 0.70 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 47 H 0.04 0.60 7.37 -51.93 -0.38 0.22 16 48 H 0.10 1.67 7.24 -51.93 -0.38 1.29 16 49 H 0.09 1.45 7.18 -51.93 -0.37 1.07 16 50 H 0.05 0.81 7.77 -51.93 -0.40 0.41 16 51 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 52 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 411.93 15.07 6.21 6.21 Total: -1.00 -32.52 411.93 -8.46 -40.98 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -8.99 Total: 12.71 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 0.63 Total: 8.26 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.73 Total: -55.50 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.55 Total: -28.77 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.52 -8.46 -40.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493916017.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.480 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds