Wall clock time and date at job start Wed Apr 1 2020 00:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.46167 * 2 1 4 4 C 1.54386 * 110.41135 * 237.58891 * 2 1 3 5 5 C 1.54258 * 105.05965 * 217.36678 * 4 2 1 6 6 H 1.08999 * 110.32334 * 118.89195 * 5 4 2 7 7 C 1.53000 * 110.32519 * 241.00312 * 5 4 2 8 8 N 1.46505 * 109.47228 * 185.00320 * 7 5 4 9 9 C 1.34773 * 120.00148 * 180.02562 * 8 7 5 10 10 O 1.21508 * 119.99706 * 359.97438 * 9 8 7 11 11 O 1.34633 * 120.00267 * 180.02562 * 9 8 7 12 12 C 1.45204 * 117.00137 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47049 * 59.99830 * 12 11 9 14 14 C 1.52997 * 109.46771 * 179.97438 * 12 11 9 15 15 C 1.52991 * 109.47024 * 299.99715 * 12 11 9 16 16 C 1.54386 * 105.06085 * 0.02562 * 5 4 2 17 17 N 1.48553 * 104.59301 * 23.85144 * 16 5 4 18 18 C 1.46902 * 110.99640 * 200.96190 * 17 16 5 19 19 C 1.50702 * 109.47027 * 285.41725 * 18 17 16 20 20 O 1.21293 * 120.00255 * 0.02562 * 19 18 17 21 21 N 1.34783 * 120.00004 * 180.02562 * 19 18 17 22 22 C 1.37092 * 119.99804 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00499 * 0.02562 * 22 21 19 24 24 C 1.38956 * 119.99671 * 179.72159 * 22 21 19 25 25 N 1.31414 * 120.00152 * 0.27554 * 24 22 21 26 26 Si 1.86803 * 119.99914 * 180.27723 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00084 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00035 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99834 * 26 24 22 30 30 H 1.08993 * 109.46784 * 299.03800 * 1 2 3 31 31 H 1.08996 * 109.46771 * 59.04265 * 1 2 3 32 32 H 1.09002 * 109.46515 * 179.03858 * 1 2 3 33 33 H 1.08996 * 110.32026 * 336.26272 * 4 2 1 34 34 H 1.08998 * 110.31988 * 98.37068 * 4 2 1 35 35 H 1.09004 * 109.46632 * 304.99947 * 7 5 4 36 36 H 1.08996 * 109.47286 * 65.00346 * 7 5 4 37 37 H 0.97005 * 119.99659 * 359.97438 * 8 7 5 38 38 H 1.09000 * 109.47307 * 59.99854 * 13 12 11 39 39 H 1.09000 * 109.46892 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46812 * 299.99748 * 13 12 11 41 41 H 1.08996 * 109.47682 * 60.00148 * 14 12 11 42 42 H 1.09006 * 109.46827 * 180.02562 * 14 12 11 43 43 H 1.09000 * 109.47597 * 299.99514 * 14 12 11 44 44 H 1.09003 * 109.47438 * 59.99884 * 15 12 11 45 45 H 1.08996 * 109.47260 * 180.02562 * 15 12 11 46 46 H 1.09010 * 109.47303 * 299.99890 * 15 12 11 47 47 H 1.08998 * 110.40723 * 265.06974 * 16 5 4 48 48 H 1.08995 * 110.41008 * 142.63284 * 16 5 4 49 49 H 1.09004 * 109.47131 * 165.41969 * 18 17 16 50 50 H 1.08994 * 109.47471 * 45.41719 * 18 17 16 51 51 H 0.97000 * 119.99715 * 359.97438 * 21 19 18 52 52 H 0.96991 * 119.99827 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0685 -0.7755 -1.2215 5 6 3.3178 -1.5188 -0.7055 6 1 3.1861 -2.5961 -0.8067 7 6 4.5616 -1.0622 -1.4705 8 7 5.7146 -1.8625 -1.0504 9 6 6.9267 -1.6353 -1.5941 10 8 7.0631 -0.7671 -2.4331 11 8 7.9861 -2.3712 -1.2084 12 6 9.2605 -2.0718 -1.8367 13 6 9.6424 -0.6185 -1.5483 14 6 10.3371 -3.0026 -1.2750 15 6 9.1450 -2.2784 -3.3481 16 6 3.4288 -1.1304 0.7846 17 7 2.0477 -0.7472 1.1753 18 6 2.0561 0.1000 2.3754 19 6 2.3494 -0.7474 3.5865 20 8 2.5338 -1.9398 3.4622 21 7 2.4068 -0.1804 4.8079 22 6 2.6742 -0.9513 5.9096 23 1 2.8392 -2.0129 5.7988 24 6 2.7391 -0.3657 7.1681 25 7 2.5389 0.9261 7.3029 26 14 3.1110 -1.4148 8.6683 27 1 4.5789 -1.4619 8.8878 28 1 2.4509 -0.8251 9.8607 29 1 2.5988 -2.7913 8.4490 30 1 -0.3633 0.4988 0.8984 31 1 -0.3633 0.5286 -0.8813 32 1 -0.3632 -1.0276 -0.0172 33 1 1.3236 -1.4879 -1.5760 34 1 2.3399 -0.0841 -2.0192 35 1 4.3987 -1.1934 -2.5403 36 1 4.7529 -0.0103 -1.2584 37 1 5.6057 -2.5554 -0.3803 38 1 9.7247 -0.4713 -0.4714 39 1 10.5988 -0.3937 -2.0203 40 1 8.8754 0.0448 -1.9482 41 1 10.0653 -4.0380 -1.4800 42 1 11.2939 -2.7776 -1.7463 43 1 10.4194 -2.8550 -0.1982 44 1 8.3780 -1.6151 -3.7480 45 1 10.1017 -2.0542 -3.8197 46 1 8.8729 -3.3138 -3.5536 47 1 4.1069 -0.2859 0.9077 48 1 3.7687 -1.9812 1.3749 49 1 1.0820 0.5751 2.4916 50 1 2.8243 0.8665 2.2737 51 1 2.2598 0.7732 4.9073 52 1 2.5839 1.3347 8.1814 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493916017.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:23 Heat of formation + Delta-G solvation = -145.352633 kcal Electronic energy + Delta-G solvation = -30554.058764 eV Core-core repulsion = 26359.367631 eV Total energy + Delta-G solvation = -4194.691133 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.83268 -40.82102 -39.54207 -38.36665 -36.22972 -35.89131 -35.01308 -33.43642 -33.03116 -32.29544 -28.78385 -28.35879 -28.29874 -27.20200 -26.52169 -25.19272 -23.20526 -21.76494 -21.33025 -20.94993 -20.68187 -19.87667 -19.12438 -17.84703 -17.63254 -17.33638 -16.94298 -16.50687 -16.45957 -16.22856 -15.78175 -15.65288 -15.40923 -15.36569 -15.08173 -14.64212 -14.43525 -14.22653 -13.94096 -13.65489 -13.49838 -13.35516 -13.14895 -13.06096 -12.91479 -12.86967 -12.86389 -12.76037 -12.56194 -12.47587 -12.41371 -12.31626 -12.13420 -12.10282 -11.96118 -11.68984 -11.49082 -11.45431 -11.38853 -11.11490 -10.31876 -10.23146 -10.00549 -9.34596 -8.46462 -5.94971 1.18720 1.37272 1.40652 1.53594 1.74689 2.06255 2.28164 2.79690 3.13797 3.20130 3.35865 3.53270 3.75162 3.79085 3.80293 3.86012 3.95058 4.16019 4.26995 4.30985 4.37934 4.39372 4.48788 4.51877 4.57698 4.61653 4.62509 4.71555 4.76624 4.78044 4.84687 4.86450 4.87539 4.93138 5.02677 5.04757 5.11403 5.16814 5.28074 5.29354 5.30819 5.37690 5.40599 5.44973 5.57089 5.88302 5.99837 6.12899 6.35973 6.61119 7.13423 7.31015 7.57044 8.13041 8.71236 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009144 B = 0.002621 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.487795 B =10678.751631 C =13123.570691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.050 3.950 3 H 0.059 0.941 4 C -0.100 4.100 5 C -0.091 4.091 6 H 0.093 0.907 7 C 0.153 3.847 8 N -0.706 5.706 9 C 0.645 3.355 10 O -0.591 6.591 11 O -0.375 6.375 12 C 0.123 3.877 13 C -0.180 4.180 14 C -0.138 4.138 15 C -0.177 4.177 16 C 0.044 3.956 17 N -0.501 5.501 18 C 0.047 3.953 19 C 0.444 3.556 20 O -0.613 6.613 21 N -0.577 5.577 22 C -0.330 4.330 23 H 0.079 0.921 24 C -0.015 4.015 25 N -0.923 5.923 26 Si 0.992 3.008 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.412 0.588 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.036 0.964 48 H 0.060 0.940 49 H 0.106 0.894 50 H 0.064 0.936 51 H 0.395 0.605 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.188 -1.433 -22.000 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.058 4.058 3 H 0.077 0.923 4 C -0.138 4.138 5 C -0.111 4.111 6 H 0.112 0.888 7 C 0.031 3.969 8 N -0.365 5.365 9 C 0.399 3.601 10 O -0.482 6.482 11 O -0.289 6.289 12 C 0.087 3.913 13 C -0.238 4.238 14 C -0.195 4.195 15 C -0.234 4.234 16 C -0.084 4.084 17 N -0.226 5.226 18 C -0.084 4.084 19 C 0.231 3.769 20 O -0.498 6.498 21 N -0.215 5.215 22 C -0.459 4.459 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.564 5.564 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.248 0.752 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.123 0.877 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.079 0.921 49 H 0.124 0.876 50 H 0.082 0.918 51 H 0.228 0.772 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.112 -2.148 -22.202 23.735 hybrid contribution 0.513 0.640 1.507 1.716 sum 8.624 -1.508 -20.695 22.470 Atomic orbital electron populations 1.21714 0.92961 1.02314 1.02104 1.22869 0.96962 0.96195 0.89729 0.92254 1.22333 0.95545 0.99390 0.96567 1.22067 0.94276 1.02123 0.92614 0.88826 1.21512 0.81733 0.94262 0.99374 1.44881 1.05595 1.40927 1.45140 1.18243 0.81805 0.80023 0.80044 1.90873 1.85127 1.36101 1.36139 1.86334 1.18177 1.59206 1.65212 1.22429 0.78864 0.96655 0.93381 1.22482 1.03677 0.95435 1.02169 1.21898 0.96571 0.98928 1.02060 1.22450 1.04500 1.02629 0.93796 1.23113 0.89590 0.99835 0.95901 1.65067 1.18897 1.36799 1.01820 1.21892 1.03086 0.93839 0.89621 1.20749 0.82411 0.88883 0.84883 1.90472 1.55663 1.17357 1.86351 1.41953 1.63152 1.10856 1.05563 1.19641 1.46941 0.93442 0.85925 0.90345 1.26038 0.96740 0.97311 1.01313 1.69675 1.49883 1.10863 1.25961 0.84942 0.78562 0.77958 0.76973 1.19673 1.19536 1.19715 0.93599 0.89748 0.92602 0.89215 0.88463 0.89570 0.91798 0.75186 0.92617 0.88853 0.91801 0.91127 0.87728 0.91783 0.91721 0.88974 0.91879 0.94619 0.92098 0.87600 0.91815 0.77182 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.34 71.98 0.67 -2.01 16 2 C 0.05 1.11 2.87 45.06 0.13 1.24 16 3 H 0.06 1.23 8.00 -2.39 -0.02 1.21 16 4 C -0.10 -1.71 6.20 31.49 0.20 -1.52 16 5 C -0.09 -1.87 3.09 -9.90 -0.03 -1.90 16 6 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 7 C 0.15 3.02 4.80 86.38 0.41 3.43 16 8 N -0.71 -15.86 5.44 -590.85 -3.21 -19.07 16 9 C 0.65 16.78 8.06 129.79 1.05 17.83 16 10 O -0.59 -17.26 11.88 19.81 0.24 -17.02 16 11 O -0.37 -9.18 9.94 -55.42 -0.55 -9.73 16 12 C 0.12 2.36 1.13 -10.80 -0.01 2.35 16 13 C -0.18 -3.51 8.37 71.98 0.60 -2.91 16 14 C -0.14 -1.87 8.85 71.98 0.64 -1.24 16 15 C -0.18 -3.08 8.37 71.98 0.60 -2.47 16 16 C 0.04 1.29 5.28 86.45 0.46 1.75 16 17 N -0.50 -15.83 4.66 -861.17 -4.01 -19.84 16 18 C 0.05 1.68 5.27 85.56 0.45 2.13 16 19 C 0.44 21.46 7.63 87.66 0.67 22.13 16 20 O -0.61 -34.08 14.80 -3.07 -0.05 -34.12 16 21 N -0.58 -30.19 5.29 -306.97 -1.62 -31.82 16 22 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 25 N -0.92 -50.48 13.05 21.67 0.28 -50.20 16 26 Si 0.99 43.43 29.55 68.60 2.03 45.46 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 29 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 30 H 0.04 1.01 7.31 -2.39 -0.02 0.99 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.23 8.12 -2.39 -0.02 1.21 16 33 H 0.09 1.39 7.84 -2.39 -0.02 1.38 16 34 H 0.10 1.22 7.71 -2.39 -0.02 1.21 16 35 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.06 1.37 7.98 -2.39 -0.02 1.35 16 37 H 0.41 8.77 8.52 -92.70 -0.79 7.98 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 1.57 5.88 -2.39 -0.01 1.56 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 1.46 5.88 -2.39 -0.01 1.44 16 45 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.04 1.07 7.37 -2.39 -0.02 1.05 16 48 H 0.06 2.22 7.24 -2.39 -0.02 2.20 16 49 H 0.11 3.38 7.18 -2.38 -0.02 3.36 16 50 H 0.06 2.07 7.77 -2.39 -0.02 2.05 16 51 H 0.39 19.69 7.90 -92.71 -0.73 18.96 16 52 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -72.28 411.93 -0.38 -72.66 By element: Atomic # 1 Polarization: 43.95 SS G_CDS: -0.60 Total: 43.35 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 7.11 Total: 20.34 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -8.56 Total: -120.93 kcal Atomic # 8 Polarization: -60.52 SS G_CDS: -0.36 Total: -60.88 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -72.28 -0.38 -72.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493916017.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.689 kcal (2) G-P(sol) polarization free energy of solvation -72.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds