Wall clock time and date at job start Wed Apr 1 2020 01:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.51429 * 2 1 4 4 C 1.53236 * 109.49537 * 120.07156 * 2 1 3 5 5 N 1.47078 * 108.52233 * 173.78945 * 4 2 1 6 6 C 1.34777 * 120.88026 * 128.81674 * 5 4 2 7 7 O 1.21515 * 119.99886 * 180.02562 * 6 5 4 8 8 O 1.34641 * 120.00297 * 359.72005 * 6 5 4 9 9 C 1.45199 * 117.00160 * 180.27555 * 8 6 5 10 10 C 1.52998 * 109.47225 * 60.00247 * 9 8 6 11 11 C 1.52999 * 109.47076 * 180.02562 * 9 8 6 12 12 C 1.53004 * 109.47159 * 300.00546 * 9 8 6 13 13 C 1.47076 * 118.23867 * 309.08514 * 5 4 2 14 14 H 1.08996 * 109.63208 * 170.62120 * 13 5 4 15 15 C 1.52999 * 109.62774 * 291.20270 * 13 5 4 16 16 C 1.52782 * 108.76462 * 50.85253 * 13 5 4 17 17 N 1.46900 * 109.42338 * 306.42496 * 16 13 5 18 18 C 1.46900 * 111.00360 * 187.11484 * 17 16 13 19 19 C 1.50707 * 109.46814 * 301.17025 * 18 17 16 20 20 O 1.21293 * 120.00138 * 354.42359 * 19 18 17 21 21 N 1.34776 * 119.99839 * 174.41200 * 19 18 17 22 22 C 1.37099 * 120.00214 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99454 * 0.02562 * 22 21 19 24 24 C 1.38938 * 120.00344 * 180.02562 * 22 21 19 25 25 N 1.31418 * 120.00426 * 180.02562 * 24 22 21 26 26 Si 1.86807 * 119.99964 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46859 * 90.00057 * 26 24 22 28 28 H 1.48504 * 109.46927 * 210.00034 * 26 24 22 29 29 H 1.48493 * 109.46896 * 329.99803 * 26 24 22 30 30 H 1.08996 * 109.46885 * 293.69291 * 1 2 3 31 31 H 1.08998 * 109.46980 * 53.69383 * 1 2 3 32 32 H 1.08997 * 109.46811 * 173.69559 * 1 2 3 33 33 H 1.08996 * 109.63239 * 54.07459 * 4 2 1 34 34 H 1.09001 * 109.78772 * 293.59216 * 4 2 1 35 35 H 1.09007 * 109.47011 * 59.99877 * 10 9 8 36 36 H 1.08997 * 109.47625 * 179.97438 * 10 9 8 37 37 H 1.09005 * 109.47201 * 300.00723 * 10 9 8 38 38 H 1.09001 * 109.47133 * 60.00256 * 11 9 8 39 39 H 1.08997 * 109.47024 * 179.97438 * 11 9 8 40 40 H 1.08998 * 109.47225 * 300.00335 * 11 9 8 41 41 H 1.08996 * 109.47303 * 59.99527 * 12 9 8 42 42 H 1.09004 * 109.47060 * 180.02562 * 12 9 8 43 43 H 1.09001 * 109.47058 * 299.99748 * 12 9 8 44 44 H 1.08997 * 109.47038 * 60.00207 * 15 13 5 45 45 H 1.09005 * 109.47055 * 179.97438 * 15 13 5 46 46 H 1.08994 * 109.47117 * 299.99499 * 15 13 5 47 47 H 1.09003 * 109.56801 * 186.37206 * 16 13 5 48 48 H 1.09000 * 109.36156 * 66.35475 * 16 13 5 49 49 H 1.08995 * 109.46876 * 61.16599 * 18 17 16 50 50 H 1.08991 * 109.47573 * 181.17462 * 18 17 16 51 51 H 0.97000 * 120.00278 * 0.02562 * 21 19 18 52 52 H 0.96991 * 120.00511 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0414 -0.7238 1.2501 5 7 3.5043 -0.8432 1.1552 6 6 4.2978 -0.4492 2.1709 7 8 5.5045 -0.5547 2.0752 8 8 3.7537 0.0670 3.2891 9 6 4.6690 0.4758 4.3395 10 6 5.6103 1.5565 3.8037 11 6 3.8730 1.0326 5.5215 12 6 5.4884 -0.7314 4.8003 13 6 4.0785 -1.3985 -0.0797 14 1 5.1609 -1.2709 -0.0699 15 6 3.7332 -2.8853 -0.1839 16 6 3.4867 -0.6536 -1.2752 17 7 2.0202 -0.6938 -1.1985 18 6 1.4139 -0.1358 -2.4147 19 6 1.8728 1.2881 -2.5969 20 8 2.5479 1.8218 -1.7422 21 7 1.5331 1.9683 -3.7098 22 6 1.9501 3.2638 -3.8754 23 1 2.5511 3.7391 -3.1142 24 6 1.5995 3.9653 -5.0223 25 7 1.9996 5.2069 -5.1813 26 14 0.5595 3.1434 -6.3385 27 1 -0.8784 3.3813 -6.0534 28 1 0.9015 3.7126 -7.6668 29 1 0.8285 1.6830 -6.3417 30 1 -0.3633 0.4129 0.9410 31 1 -0.3633 0.6085 -0.8282 32 1 -0.3633 -1.0214 -0.1128 33 1 1.5958 -1.7169 1.3062 34 1 1.7776 -0.1534 2.1406 35 1 5.0266 2.4165 3.4753 36 1 6.2972 1.8637 4.5923 37 1 6.1774 1.1594 2.9616 38 1 3.2027 0.2624 5.9031 39 1 4.5601 1.3391 6.3101 40 1 3.2890 1.8925 5.1934 41 1 6.0554 -1.1284 3.9584 42 1 6.1752 -0.4245 5.5892 43 1 4.8178 -1.5012 5.1821 44 1 2.6501 -3.0064 -0.2021 45 1 4.1596 -3.2941 -1.1000 46 1 4.1436 -3.4147 0.6759 47 1 3.8156 -1.1275 -2.2000 48 1 3.8235 0.3829 -1.2579 49 1 1.7181 -0.7288 -3.2772 50 1 0.3281 -0.1586 -2.3228 51 1 0.9931 1.5416 -4.3932 52 1 1.7552 5.6965 -5.9821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494486571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:22 Heat of formation + Delta-G solvation = -97.626555 kcal Electronic energy + Delta-G solvation = -32472.157719 eV Core-core repulsion = 28279.536144 eV Total energy + Delta-G solvation = -4192.621575 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.91516 -39.74848 -38.07525 -36.65176 -34.80498 -34.12464 -33.84489 -32.79489 -31.77497 -29.98714 -27.91535 -27.51504 -27.42467 -26.12523 -25.18871 -23.56416 -23.09321 -21.13107 -20.00071 -19.46724 -18.86818 -18.26867 -17.65435 -16.70687 -16.18725 -15.97698 -15.71094 -15.37145 -14.96011 -14.71058 -14.49859 -14.44413 -14.04799 -13.96905 -13.54672 -13.40779 -13.10086 -12.99183 -12.62274 -12.58207 -12.33301 -12.24553 -12.18162 -12.00134 -11.96154 -11.87165 -11.59880 -11.54854 -11.49855 -11.30416 -11.28154 -11.22486 -10.89662 -10.66333 -10.55310 -10.48832 -10.36814 -10.06677 -9.88040 -9.56326 -9.37542 -8.64458 -8.24348 -7.53983 -6.38567 -3.90058 2.19203 2.96069 2.97453 3.01720 3.10665 3.61335 3.84248 4.03740 4.14662 4.60087 4.64061 4.68223 4.82572 4.93656 5.01259 5.09177 5.20338 5.29390 5.34745 5.39530 5.43574 5.45205 5.52991 5.57116 5.60582 5.66770 5.70644 5.76853 5.79054 5.79541 5.84911 5.86142 5.88697 5.89201 5.98269 6.01527 6.19988 6.25708 6.27990 6.33817 6.47195 6.52041 6.61440 6.63400 7.14600 7.29682 7.48576 7.53176 8.07584 8.45132 8.50173 8.87144 9.34604 9.72892 10.74268 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015608 B = 0.003001 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.571679 B = 9326.814149 C =10003.262020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 H 0.088 0.912 4 C 0.126 3.874 5 N -0.586 5.586 6 C 0.656 3.344 7 O -0.574 6.574 8 O -0.363 6.363 9 C 0.136 3.864 10 C -0.184 4.184 11 C -0.140 4.140 12 C -0.181 4.181 13 C 0.161 3.839 14 H 0.100 0.900 15 C -0.152 4.152 16 C 0.027 3.973 17 N -0.504 5.504 18 C 0.034 3.966 19 C 0.414 3.586 20 O -0.575 6.575 21 N -0.583 5.583 22 C -0.307 4.307 23 H 0.118 0.882 24 C 0.043 3.957 25 N -0.878 5.878 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.276 1.276 29 H -0.268 1.268 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.048 0.952 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.096 0.904 51 H 0.371 0.629 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.764 -15.131 14.810 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.060 4.060 3 H 0.106 0.894 4 C 0.003 3.997 5 N -0.325 5.325 6 C 0.411 3.589 7 O -0.464 6.464 8 O -0.278 6.278 9 C 0.099 3.901 10 C -0.241 4.241 11 C -0.197 4.197 12 C -0.238 4.238 13 C 0.059 3.941 14 H 0.118 0.882 15 C -0.210 4.210 16 C -0.101 4.101 17 N -0.228 5.228 18 C -0.098 4.098 19 C 0.200 3.800 20 O -0.460 6.460 21 N -0.221 5.221 22 C -0.436 4.436 23 H 0.136 0.864 24 C -0.161 4.161 25 N -0.518 5.518 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.194 1.194 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.107 0.893 50 H 0.114 0.886 51 H 0.204 0.796 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.050 -15.065 15.347 21.506 hybrid contribution -0.587 0.493 -1.348 1.550 sum -0.637 -14.572 14.000 20.217 Atomic orbital electron populations 1.21827 0.94204 1.02009 1.02113 1.22221 0.95219 0.99218 0.89334 0.89422 1.21837 0.78612 1.00868 0.98423 1.47060 1.06748 1.64140 1.14581 1.17930 0.84072 0.76680 0.80229 1.90858 1.12975 1.60915 1.81674 1.86289 1.41081 1.75049 1.25360 1.22022 0.88676 0.94646 0.84767 1.22515 0.99958 0.98284 1.03362 1.21848 1.00601 1.01715 0.95550 1.22502 1.00634 0.97530 1.03177 1.21232 0.98765 0.92979 0.81151 0.88195 1.22030 1.03168 0.94443 1.01355 1.22666 0.88123 1.02409 0.96935 1.62485 1.06598 1.52387 1.01289 1.22187 1.00948 0.92664 0.93964 1.21038 0.85998 0.89031 0.83887 1.90470 1.42363 1.70355 1.42783 1.42402 1.47696 1.13669 1.18358 1.19440 1.31533 0.86422 1.06250 0.86403 1.25078 0.97764 0.95622 0.97630 1.69624 1.44637 1.09209 1.28292 0.86665 0.81087 0.79429 0.82190 1.19557 1.20128 1.19380 0.92220 0.92069 0.92031 0.91169 0.89328 0.91997 0.91387 0.89310 0.91629 0.90319 0.91378 0.89376 0.91372 0.92401 0.91030 0.91548 0.93285 0.90136 0.89944 0.89265 0.88564 0.79621 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.49 37.16 0.32 -1.46 16 2 C 0.05 0.73 2.20 -67.59 -0.15 0.58 16 3 H 0.09 1.71 5.80 -51.93 -0.30 1.41 16 4 C 0.13 1.65 5.51 -3.60 -0.02 1.63 16 5 N -0.59 -8.67 2.71 -170.95 -0.46 -9.13 16 6 C 0.66 10.42 7.75 54.06 0.42 10.84 16 7 O -0.57 -9.99 11.33 -19.28 -0.22 -10.21 16 8 O -0.36 -5.18 8.56 -40.33 -0.35 -5.53 16 9 C 0.14 1.60 1.13 -90.62 -0.10 1.50 16 10 C -0.18 -2.28 8.37 37.16 0.31 -1.97 16 11 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 12 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 13 C 0.16 2.28 3.21 -67.73 -0.22 2.06 16 14 H 0.10 1.52 7.06 -51.93 -0.37 1.16 16 15 C -0.15 -1.73 9.20 37.16 0.34 -1.39 16 16 C 0.03 0.43 4.47 -3.94 -0.02 0.41 16 17 N -0.50 -7.40 4.16 -228.07 -0.95 -8.35 16 18 C 0.03 0.53 5.43 -4.97 -0.03 0.50 16 19 C 0.41 8.77 7.18 -10.98 -0.08 8.69 16 20 O -0.57 -14.25 11.25 5.55 0.06 -14.19 16 21 N -0.58 -13.32 5.09 -10.96 -0.06 -13.37 16 22 C -0.31 -8.49 10.16 -14.94 -0.15 -8.64 16 23 H 0.12 3.76 7.39 -52.48 -0.39 3.37 16 24 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 25 N -0.88 -25.35 13.96 55.50 0.77 -24.58 16 26 Si 0.88 18.95 27.74 -169.99 -4.71 14.24 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 28 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 29 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.83 6.60 -51.93 -0.34 0.49 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.81 7.65 -51.93 -0.40 0.42 16 34 H 0.09 1.13 6.98 -51.93 -0.36 0.77 16 35 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.33 5.88 -51.93 -0.31 1.03 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.17 5.88 -51.93 -0.31 0.86 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.82 7.09 -51.93 -0.37 0.45 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 48 H 0.08 1.67 5.67 -51.93 -0.29 1.37 16 49 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.10 1.31 6.02 -51.93 -0.31 1.00 16 51 H 0.37 7.45 5.76 -40.82 -0.24 7.22 16 52 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 393.27 15.07 5.93 5.93 Total: -1.00 -32.00 393.27 -7.46 -39.46 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -8.64 Total: 14.50 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 1.17 Total: 11.24 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.69 Total: -55.43 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.50 Total: -29.93 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.71 Total: 14.24 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.00 -7.46 -39.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494486571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.170 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds